Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3827.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3824.1 and Xcc-8004.3825.1 are separated by 101 nucleotidesXcc-8004.3825.1 and Xcc-8004.3827.1 are separated by 91 nucleotidesXcc-8004.3827.1 and Xcc-8004.3828.1 are separated by 250 nucleotidesXcc-8004.3828.1 and Xcc-8004.3829.1 are separated by 12 nucleotides Xcc-8004.3824.1: Xcc-8004.3824.1 - Proposed peptidoglycan lipid II flippase MurJ, at 3,701,503 to 3,703,110 Xcc-8004.3824.1 Xcc-8004.3825.1: Xcc-8004.3825.1 - SSU ribosomal protein S20p, at 3,703,212 to 3,703,481 Xcc-8004.3825.1 Xcc-8004.3827.1: Xcc-8004.3827.1 - GTP-binding protein Obg, at 3,703,573 to 3,704,625 Xcc-8004.3827.1 Xcc-8004.3828.1: Xcc-8004.3828.1 - LSU ribosomal protein L27p, at 3,704,876 to 3,705,136 Xcc-8004.3828.1 Xcc-8004.3829.1: Xcc-8004.3829.1 - LSU ribosomal protein L21p, at 3,705,149 to 3,705,469 Xcc-8004.3829.1 Position (kb) 3703 3704 3705Strain fitness (log2 ratio) -1 0 1 2at 3703.479 kb on + strandat 3703.479 kb on + strandat 3703.480 kb on - strandat 3704.720 kb on - strandat 3704.720 kb on - strandat 3704.720 kb on - strandat 3704.770 kb on - strandat 3704.841 kb on - strandat 3704.841 kb on - strandat 3704.878 kb on - strandat 3705.539 kb on - strandat 3705.539 kb on - strandat 3705.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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3,703,479 + -0.5
3,703,479 + -0.3
3,703,480 - +0.7
3,704,720 - +0.5
3,704,720 - -0.9
3,704,720 - -0.9
3,704,770 - -0.5
3,704,841 - +2.7
3,704,841 - +0.5
3,704,878 - -1.4
3,705,539 - +0.1
3,705,539 - +0.3
3,705,547 - +0.2

Or see this region's nucleotide sequence