Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3766.1 and Xcc-8004.3767.1 are separated by 64 nucleotides Xcc-8004.3767.1 and Xcc-8004.3769.1 are separated by 43 nucleotides Xcc-8004.3769.1 and Xcc-8004.3770.1 are separated by 108 nucleotides Xcc-8004.3770.1 and Xcc-8004.3771.1 overlap by 10 nucleotides
Xcc-8004.3766.1: Xcc-8004.3766.1 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 3,641,382 to 3,642,140
Xcc-8004.3766.1
Xcc-8004.3767.1: Xcc-8004.3767.1 - 16S rRNA processing protein RimM, at 3,642,205 to 3,642,717
Xcc-8004.3767.1
Xcc-8004.3769.1: Xcc-8004.3769.1 - SSU ribosomal protein S16p, at 3,642,761 to 3,643,021
Xcc-8004.3769.1
Xcc-8004.3770.1: Xcc-8004.3770.1 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 3,643,130 to 3,643,927
Xcc-8004.3770.1
Xcc-8004.3771.1: Xcc-8004.3771.1 - 2-nitropropane dioxygenase, at 3,643,918 to 3,645,012
Xcc-8004.3771.1
Position (kb) 3642
3643
3644 Strain fitness (log2 ratio) -2
-1
0
1 at 3643.189 kb on + strand at 3643.189 kb on + strand at 3643.190 kb on - strand at 3643.190 kb on - strand at 3643.190 kb on - strand at 3643.246 kb on + strand, within Xcc-8004.3770.1 at 3643.246 kb on + strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.247 kb on - strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.274 kb on + strand, within Xcc-8004.3770.1 at 3643.275 kb on - strand, within Xcc-8004.3770.1 at 3643.275 kb on - strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.551 kb on + strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.552 kb on - strand, within Xcc-8004.3770.1 at 3643.656 kb on + strand, within Xcc-8004.3770.1 at 3643.656 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.724 kb on + strand, within Xcc-8004.3770.1 at 3643.725 kb on - strand, within Xcc-8004.3770.1 at 3643.858 kb on - strand at 3643.858 kb on - strand at 3643.858 kb on - strand at 3643.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 3,643,189 + -0.5 3,643,189 + -0.5 3,643,190 - -1.5 3,643,190 - -1.6 3,643,190 - -0.1 3,643,246 + Xcc-8004.3770.1 0.15 -0.5 3,643,246 + Xcc-8004.3770.1 0.15 -2.0 3,643,247 - Xcc-8004.3770.1 0.15 -0.6 3,643,247 - Xcc-8004.3770.1 0.15 -2.5 3,643,247 - Xcc-8004.3770.1 0.15 +1.2 3,643,274 + Xcc-8004.3770.1 0.18 -0.5 3,643,274 + Xcc-8004.3770.1 0.18 -1.0 3,643,274 + Xcc-8004.3770.1 0.18 -1.9 3,643,274 + Xcc-8004.3770.1 0.18 +0.2 3,643,275 - Xcc-8004.3770.1 0.18 -0.7 3,643,275 - Xcc-8004.3770.1 0.18 -0.0 3,643,551 + Xcc-8004.3770.1 0.53 -1.8 3,643,551 + Xcc-8004.3770.1 0.53 -1.0 3,643,551 + Xcc-8004.3770.1 0.53 -2.4 3,643,551 + Xcc-8004.3770.1 0.53 -2.2 3,643,552 - Xcc-8004.3770.1 0.53 -2.2 3,643,552 - Xcc-8004.3770.1 0.53 -2.2 3,643,552 - Xcc-8004.3770.1 0.53 -1.0 3,643,552 - Xcc-8004.3770.1 0.53 -1.8 3,643,656 + Xcc-8004.3770.1 0.66 -1.5 3,643,656 + Xcc-8004.3770.1 0.66 -1.9 3,643,724 + Xcc-8004.3770.1 0.74 +1.0 3,643,724 + Xcc-8004.3770.1 0.74 -2.3 3,643,724 + Xcc-8004.3770.1 0.74 -2.7 3,643,724 + Xcc-8004.3770.1 0.74 -1.0 3,643,725 - Xcc-8004.3770.1 0.75 -0.8 3,643,858 - +0.8 3,643,858 - +0.7 3,643,858 - -1.0 3,643,858 - +0.2
Or see this region's nucleotide sequence