Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3417.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3415.1 and Xcc-8004.3416.1 are separated by 220 nucleotidesXcc-8004.3416.1 and Xcc-8004.3417.1 overlap by 4 nucleotidesXcc-8004.3417.1 and Xcc-8004.3418.1 are separated by 95 nucleotides Xcc-8004.3415.1: Xcc-8004.3415.1 - Lysine decarboxylase family, at 3,306,510 to 3,307,196 Xcc-8004.3415.1 Xcc-8004.3416.1: Xcc-8004.3416.1 - FIG000605: protein co-occurring with transport systems (COG1739), at 3,307,417 to 3,308,010 Xcc-8004.3416.1 Xcc-8004.3417.1: Xcc-8004.3417.1 - ABC-type multidrug transport system, ATPase and permease components, at 3,308,007 to 3,309,773 Xcc-8004.3417.1 Xcc-8004.3418.1: Xcc-8004.3418.1 - Hydrogen peroxide-inducible genes activator, at 3,309,869 to 3,310,768 Xcc-8004.3418.1 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3307.017 kb on + strand, within Xcc-8004.3415.1at 3307.017 kb on + strand, within Xcc-8004.3415.1at 3307.017 kb on + strand, within Xcc-8004.3415.1at 3307.018 kb on - strand, within Xcc-8004.3415.1at 3307.018 kb on - strand, within Xcc-8004.3415.1at 3307.018 kb on - strand, within Xcc-8004.3415.1at 3307.018 kb on - strand, within Xcc-8004.3415.1at 3307.095 kb on + strand, within Xcc-8004.3415.1at 3307.095 kb on + strand, within Xcc-8004.3415.1at 3307.137 kb on + strandat 3307.137 kb on + strandat 3307.137 kb on + strandat 3307.138 kb on - strandat 3307.138 kb on - strandat 3307.138 kb on - strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.245 kb on + strandat 3307.246 kb on - strandat 3307.246 kb on - strandat 3307.246 kb on - strandat 3307.246 kb on - strandat 3307.248 kb on + strandat 3307.276 kb on - strandat 3307.276 kb on - strandat 3307.276 kb on - strandat 3307.276 kb on - strandat 3307.276 kb on - strandat 3307.283 kb on + strandat 3307.284 kb on - strandat 3307.284 kb on - strandat 3307.284 kb on - strandat 3307.284 kb on - strandat 3307.404 kb on + strandat 3307.404 kb on + strandat 3307.404 kb on + strandat 3307.404 kb on + strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.405 kb on - strandat 3307.570 kb on + strand, within Xcc-8004.3416.1at 3307.571 kb on - strand, within Xcc-8004.3416.1at 3307.588 kb on + strand, within Xcc-8004.3416.1at 3307.589 kb on - strand, within Xcc-8004.3416.1at 3307.640 kb on + strand, within Xcc-8004.3416.1at 3307.640 kb on + strand, within Xcc-8004.3416.1at 3307.640 kb on + strand, within Xcc-8004.3416.1at 3307.640 kb on + strand, within Xcc-8004.3416.1at 3307.641 kb on - strand, within Xcc-8004.3416.1at 3307.641 kb on - strand, within Xcc-8004.3416.1at 3307.641 kb on - strand, within Xcc-8004.3416.1at 3307.641 kb on - strand, within Xcc-8004.3416.1at 3307.663 kb on + strand, within Xcc-8004.3416.1at 3307.697 kb on - strand, within Xcc-8004.3416.1at 3308.271 kb on + strand, within Xcc-8004.3417.1at 3308.271 kb on + strand, within Xcc-8004.3417.1at 3308.272 kb on - strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.325 kb on + strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.326 kb on - strand, within Xcc-8004.3417.1at 3308.395 kb on + strand, within Xcc-8004.3417.1at 3308.644 kb on + strand, within Xcc-8004.3417.1at 3308.645 kb on - strand, within Xcc-8004.3417.1at 3308.740 kb on + strand, within Xcc-8004.3417.1at 3308.741 kb on - strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.287 kb on - strand, within Xcc-8004.3417.1at 3309.406 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.735 kb on + strandat 3309.905 kb on + strandat 3309.905 kb on + strandat 3309.906 kb on - strandat 3309.906 kb on - strandat 3309.906 kb on - strandat 3310.051 kb on + strand, within Xcc-8004.3418.1at 3310.051 kb on + strand, within Xcc-8004.3418.1at 3310.052 kb on - strand, within Xcc-8004.3418.1at 3310.190 kb on + strand, within Xcc-8004.3418.1at 3310.473 kb on - strand, within Xcc-8004.3418.1at 3310.535 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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3,307,017 + Xcc-8004.3415.1 0.74 +1.4
3,307,017 + Xcc-8004.3415.1 0.74 +0.2
3,307,017 + Xcc-8004.3415.1 0.74 -0.6
3,307,018 - Xcc-8004.3415.1 0.74 -1.7
3,307,018 - Xcc-8004.3415.1 0.74 -4.2
3,307,018 - Xcc-8004.3415.1 0.74 -0.6
3,307,018 - Xcc-8004.3415.1 0.74 +1.6
3,307,095 + Xcc-8004.3415.1 0.85 +1.3
3,307,095 + Xcc-8004.3415.1 0.85 -0.6
3,307,137 + -0.6
3,307,137 + +0.6
3,307,137 + +0.6
3,307,138 - -2.3
3,307,138 - -0.8
3,307,138 - +3.0
3,307,245 + +1.0
3,307,245 + -0.6
3,307,245 + +0.3
3,307,245 + -2.9
3,307,245 + -1.0
3,307,245 + -1.5
3,307,245 + +0.4
3,307,245 + -1.0
3,307,245 + -0.8
3,307,245 + +1.1
3,307,245 + +0.1
3,307,245 + +0.7
3,307,246 - -1.6
3,307,246 - -0.9
3,307,246 - +1.3
3,307,246 - +1.7
3,307,248 + -0.6
3,307,276 - -0.5
3,307,276 - -1.4
3,307,276 - -3.1
3,307,276 - +0.5
3,307,276 - +1.6
3,307,283 + -0.9
3,307,284 - -0.7
3,307,284 - +0.3
3,307,284 - +1.0
3,307,284 - -1.0
3,307,404 + -1.1
3,307,404 + +0.1
3,307,404 + +0.9
3,307,404 + -1.2
3,307,405 - -0.3
3,307,405 - -0.6
3,307,405 - +0.0
3,307,405 - -0.3
3,307,405 - +0.3
3,307,405 - -0.6
3,307,405 - +0.7
3,307,405 - +0.4
3,307,570 + Xcc-8004.3416.1 0.26 +0.3
3,307,571 - Xcc-8004.3416.1 0.26 +0.9
3,307,588 + Xcc-8004.3416.1 0.29 -1.0
3,307,589 - Xcc-8004.3416.1 0.29 -1.2
3,307,640 + Xcc-8004.3416.1 0.38 +0.8
3,307,640 + Xcc-8004.3416.1 0.38 +1.3
3,307,640 + Xcc-8004.3416.1 0.38 +1.3
3,307,640 + Xcc-8004.3416.1 0.38 +0.5
3,307,641 - Xcc-8004.3416.1 0.38 +0.3
3,307,641 - Xcc-8004.3416.1 0.38 -0.0
3,307,641 - Xcc-8004.3416.1 0.38 -0.3
3,307,641 - Xcc-8004.3416.1 0.38 -3.0
3,307,663 + Xcc-8004.3416.1 0.41 -0.2
3,307,697 - Xcc-8004.3416.1 0.47 +1.2
3,308,271 + Xcc-8004.3417.1 0.15 -0.0
3,308,271 + Xcc-8004.3417.1 0.15 +0.2
3,308,272 - Xcc-8004.3417.1 0.15 +1.0
3,308,325 + Xcc-8004.3417.1 0.18 +2.6
3,308,325 + Xcc-8004.3417.1 0.18 -1.8
3,308,325 + Xcc-8004.3417.1 0.18 -0.2
3,308,325 + Xcc-8004.3417.1 0.18 -0.3
3,308,325 + Xcc-8004.3417.1 0.18 -1.6
3,308,325 + Xcc-8004.3417.1 0.18 +0.1
3,308,325 + Xcc-8004.3417.1 0.18 +0.5
3,308,325 + Xcc-8004.3417.1 0.18 +0.2
3,308,325 + Xcc-8004.3417.1 0.18 +0.5
3,308,326 - Xcc-8004.3417.1 0.18 -0.9
3,308,326 - Xcc-8004.3417.1 0.18 -2.2
3,308,326 - Xcc-8004.3417.1 0.18 -0.5
3,308,326 - Xcc-8004.3417.1 0.18 +0.5
3,308,326 - Xcc-8004.3417.1 0.18 +0.6
3,308,326 - Xcc-8004.3417.1 0.18 -3.3
3,308,395 + Xcc-8004.3417.1 0.22 +1.7
3,308,644 + Xcc-8004.3417.1 0.36 +0.1
3,308,645 - Xcc-8004.3417.1 0.36 +0.6
3,308,740 + Xcc-8004.3417.1 0.41 -1.2
3,308,741 - Xcc-8004.3417.1 0.42 -0.1
3,308,880 + Xcc-8004.3417.1 0.49 -1.7
3,308,880 + Xcc-8004.3417.1 0.49 +0.4
3,308,880 + Xcc-8004.3417.1 0.49 -2.3
3,308,880 + Xcc-8004.3417.1 0.49 +0.8
3,308,880 + Xcc-8004.3417.1 0.49 -0.4
3,308,880 + Xcc-8004.3417.1 0.49 -1.3
3,308,880 + Xcc-8004.3417.1 0.49 +1.1
3,308,880 + Xcc-8004.3417.1 0.49 +0.2
3,308,880 + Xcc-8004.3417.1 0.49 -0.0
3,308,881 - Xcc-8004.3417.1 0.49 -1.1
3,308,881 - Xcc-8004.3417.1 0.49 +0.7
3,308,881 - Xcc-8004.3417.1 0.49 -3.6
3,308,881 - Xcc-8004.3417.1 0.49 -1.1
3,308,881 - Xcc-8004.3417.1 0.49 +0.6
3,308,881 - Xcc-8004.3417.1 0.49 -0.9
3,308,881 - Xcc-8004.3417.1 0.49 +0.8
3,308,881 - Xcc-8004.3417.1 0.49 +0.6
3,308,881 - Xcc-8004.3417.1 0.49 -1.7
3,308,881 - Xcc-8004.3417.1 0.49 +1.2
3,308,881 - Xcc-8004.3417.1 0.49 -1.3
3,308,881 - Xcc-8004.3417.1 0.49 +1.1
3,308,881 - Xcc-8004.3417.1 0.49 -0.5
3,308,881 - Xcc-8004.3417.1 0.49 -0.4
3,309,238 + Xcc-8004.3417.1 0.70 -1.1
3,309,238 + Xcc-8004.3417.1 0.70 -1.2
3,309,238 + Xcc-8004.3417.1 0.70 +0.4
3,309,239 - Xcc-8004.3417.1 0.70 +0.0
3,309,239 - Xcc-8004.3417.1 0.70 +1.3
3,309,239 - Xcc-8004.3417.1 0.70 +1.0
3,309,239 - Xcc-8004.3417.1 0.70 +0.9
3,309,239 - Xcc-8004.3417.1 0.70 +0.2
3,309,239 - Xcc-8004.3417.1 0.70 +2.3
3,309,287 - Xcc-8004.3417.1 0.72 -0.3
3,309,406 - Xcc-8004.3417.1 0.79 -2.3
3,309,430 - Xcc-8004.3417.1 0.81 -0.4
3,309,430 - Xcc-8004.3417.1 0.81 +0.5
3,309,430 - Xcc-8004.3417.1 0.81 -2.1
3,309,430 - Xcc-8004.3417.1 0.81 +0.4
3,309,735 + +0.7
3,309,905 + -3.5
3,309,905 + -2.1
3,309,906 - -0.7
3,309,906 - +0.7
3,309,906 - +1.1
3,310,051 + Xcc-8004.3418.1 0.20 +1.6
3,310,051 + Xcc-8004.3418.1 0.20 +1.1
3,310,052 - Xcc-8004.3418.1 0.20 -0.2
3,310,190 + Xcc-8004.3418.1 0.36 +1.2
3,310,473 - Xcc-8004.3418.1 0.67 -1.1
3,310,535 + Xcc-8004.3418.1 0.74 +0.0
3,310,610 + Xcc-8004.3418.1 0.82 +1.2
3,310,610 + Xcc-8004.3418.1 0.82 -0.9
3,310,610 + Xcc-8004.3418.1 0.82 +0.1
3,310,610 + Xcc-8004.3418.1 0.82 +0.3
3,310,610 + Xcc-8004.3418.1 0.82 -0.4
3,310,610 + Xcc-8004.3418.1 0.82 -0.4
3,310,611 - Xcc-8004.3418.1 0.82 +0.5
3,310,611 - Xcc-8004.3418.1 0.82 +1.2
3,310,611 - Xcc-8004.3418.1 0.82 +0.9
3,310,611 - Xcc-8004.3418.1 0.82 +1.0
3,310,673 + Xcc-8004.3418.1 0.89 +1.1
3,310,673 + Xcc-8004.3418.1 0.89 +1.2
3,310,673 + Xcc-8004.3418.1 0.89 +0.1
3,310,674 - Xcc-8004.3418.1 0.89 -0.2
3,310,674 - Xcc-8004.3418.1 0.89 -1.8
3,310,674 - Xcc-8004.3418.1 0.89 +1.7

Or see this region's nucleotide sequence