Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.317.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.316.1 and Xcc-8004.317.1 are separated by 204 nucleotidesXcc-8004.317.1 and Xcc-8004.318.1 are separated by 102 nucleotides Xcc-8004.316.1: Xcc-8004.316.1 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 304,399 to 305,595 Xcc-8004.316.1 Xcc-8004.317.1: Xcc-8004.317.1 - Dipeptidyl anminopeptidase, at 305,800 to 307,893 Xcc-8004.317.1 Xcc-8004.318.1: Xcc-8004.318.1 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 307,996 to 310,038 Xcc-8004.318.1 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 305.107 kb on + strand, within Xcc-8004.316.1at 305.107 kb on + strand, within Xcc-8004.316.1at 305.107 kb on + strand, within Xcc-8004.316.1at 305.149 kb on + strand, within Xcc-8004.316.1at 305.150 kb on - strand, within Xcc-8004.316.1at 305.295 kb on + strand, within Xcc-8004.316.1at 305.296 kb on - strand, within Xcc-8004.316.1at 305.296 kb on - strand, within Xcc-8004.316.1at 305.309 kb on - strand, within Xcc-8004.316.1at 305.330 kb on - strand, within Xcc-8004.316.1at 305.375 kb on - strand, within Xcc-8004.316.1at 305.584 kb on - strandat 305.593 kb on + strandat 305.593 kb on + strandat 305.594 kb on - strandat 305.594 kb on - strandat 305.686 kb on + strandat 305.715 kb on - strandat 305.743 kb on - strandat 305.750 kb on + strandat 305.750 kb on + strandat 305.751 kb on - strandat 305.801 kb on + strandat 305.821 kb on - strandat 306.021 kb on - strand, within Xcc-8004.317.1at 306.221 kb on + strand, within Xcc-8004.317.1at 306.222 kb on - strand, within Xcc-8004.317.1at 306.222 kb on - strand, within Xcc-8004.317.1at 306.350 kb on + strand, within Xcc-8004.317.1at 306.350 kb on + strand, within Xcc-8004.317.1at 306.431 kb on + strand, within Xcc-8004.317.1at 306.431 kb on + strand, within Xcc-8004.317.1at 306.431 kb on + strand, within Xcc-8004.317.1at 306.431 kb on + strand, within Xcc-8004.317.1at 306.432 kb on - strand, within Xcc-8004.317.1at 306.560 kb on + strand, within Xcc-8004.317.1at 306.566 kb on + strand, within Xcc-8004.317.1at 306.566 kb on + strand, within Xcc-8004.317.1at 306.566 kb on + strand, within Xcc-8004.317.1at 306.566 kb on + strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.567 kb on - strand, within Xcc-8004.317.1at 306.671 kb on + strand, within Xcc-8004.317.1at 306.671 kb on + strand, within Xcc-8004.317.1at 306.671 kb on + strand, within Xcc-8004.317.1at 306.671 kb on + strand, within Xcc-8004.317.1at 306.672 kb on - strand, within Xcc-8004.317.1at 306.672 kb on - strand, within Xcc-8004.317.1at 306.672 kb on - strand, within Xcc-8004.317.1at 306.672 kb on - strand, within Xcc-8004.317.1at 306.803 kb on + strand, within Xcc-8004.317.1at 306.804 kb on - strand, within Xcc-8004.317.1at 306.806 kb on + strand, within Xcc-8004.317.1at 306.806 kb on + strand, within Xcc-8004.317.1at 306.806 kb on + strand, within Xcc-8004.317.1at 306.807 kb on - strand, within Xcc-8004.317.1at 306.807 kb on - strand, within Xcc-8004.317.1at 306.807 kb on - strand, within Xcc-8004.317.1at 306.833 kb on + strand, within Xcc-8004.317.1at 306.834 kb on - strand, within Xcc-8004.317.1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.118 kb on + strand, within Xcc-8004.317.1at 307.119 kb on - strand, within Xcc-8004.317.1at 307.159 kb on - strand, within Xcc-8004.317.1at 307.222 kb on + strand, within Xcc-8004.317.1at 307.222 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.271 kb on + strand, within Xcc-8004.317.1at 307.272 kb on - strand, within Xcc-8004.317.1at 307.272 kb on - strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.289 kb on + strand, within Xcc-8004.317.1at 307.290 kb on - strand, within Xcc-8004.317.1at 307.290 kb on - strand, within Xcc-8004.317.1at 307.355 kb on + strand, within Xcc-8004.317.1at 307.355 kb on + strand, within Xcc-8004.317.1at 307.356 kb on - strand, within Xcc-8004.317.1at 307.430 kb on + strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.431 kb on - strand, within Xcc-8004.317.1at 307.500 kb on - strand, within Xcc-8004.317.1at 307.538 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.559 kb on + strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.560 kb on - strand, within Xcc-8004.317.1at 307.569 kb on - strand, within Xcc-8004.317.1at 307.569 kb on - strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.571 kb on + strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.572 kb on - strand, within Xcc-8004.317.1at 307.685 kb on + strandat 307.685 kb on + strandat 307.685 kb on + strandat 307.686 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.943 kb on - strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.997 kb on + strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 307.998 kb on - strandat 308.066 kb on + strandat 308.066 kb on + strandat 308.067 kb on - strandat 308.067 kb on - strandat 308.067 kb on - strandat 308.320 kb on + strand, within Xcc-8004.318.1at 308.320 kb on + strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.382 kb on - strand, within Xcc-8004.318.1at 308.485 kb on - strand, within Xcc-8004.318.1at 308.838 kb on - strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.840 kb on + strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1at 308.841 kb on - strand, within Xcc-8004.318.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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305,107 + Xcc-8004.316.1 0.59 +0.3
305,107 + Xcc-8004.316.1 0.59 -2.2
305,107 + Xcc-8004.316.1 0.59 +2.2
305,149 + Xcc-8004.316.1 0.63 +0.7
305,150 - Xcc-8004.316.1 0.63 -1.1
305,295 + Xcc-8004.316.1 0.75 -0.1
305,296 - Xcc-8004.316.1 0.75 +1.7
305,296 - Xcc-8004.316.1 0.75 +0.0
305,309 - Xcc-8004.316.1 0.76 -1.0
305,330 - Xcc-8004.316.1 0.78 +0.8
305,375 - Xcc-8004.316.1 0.82 +0.4
305,584 - -1.7
305,593 + +0.6
305,593 + +2.3
305,594 - -1.7
305,594 - +0.9
305,686 + -0.1
305,715 - -0.2
305,743 - -0.3
305,750 + -0.8
305,750 + -0.6
305,751 - -1.3
305,801 + +0.2
305,821 - -0.6
306,021 - Xcc-8004.317.1 0.11 -2.7
306,221 + Xcc-8004.317.1 0.20 -1.6
306,222 - Xcc-8004.317.1 0.20 +1.0
306,222 - Xcc-8004.317.1 0.20 +1.8
306,350 + Xcc-8004.317.1 0.26 -1.6
306,350 + Xcc-8004.317.1 0.26 +0.6
306,431 + Xcc-8004.317.1 0.30 -0.5
306,431 + Xcc-8004.317.1 0.30 +0.3
306,431 + Xcc-8004.317.1 0.30 +0.1
306,431 + Xcc-8004.317.1 0.30 +1.1
306,432 - Xcc-8004.317.1 0.30 +2.1
306,560 + Xcc-8004.317.1 0.36 -0.8
306,566 + Xcc-8004.317.1 0.37 +0.9
306,566 + Xcc-8004.317.1 0.37 -0.4
306,566 + Xcc-8004.317.1 0.37 +1.2
306,566 + Xcc-8004.317.1 0.37 +0.3
306,567 - Xcc-8004.317.1 0.37 +0.7
306,567 - Xcc-8004.317.1 0.37 +1.2
306,567 - Xcc-8004.317.1 0.37 -1.1
306,567 - Xcc-8004.317.1 0.37 +0.5
306,567 - Xcc-8004.317.1 0.37 +1.5
306,567 - Xcc-8004.317.1 0.37 +1.2
306,567 - Xcc-8004.317.1 0.37 -1.2
306,671 + Xcc-8004.317.1 0.42 +1.0
306,671 + Xcc-8004.317.1 0.42 +0.3
306,671 + Xcc-8004.317.1 0.42 +1.0
306,671 + Xcc-8004.317.1 0.42 -2.9
306,672 - Xcc-8004.317.1 0.42 -1.7
306,672 - Xcc-8004.317.1 0.42 -0.2
306,672 - Xcc-8004.317.1 0.42 -0.2
306,672 - Xcc-8004.317.1 0.42 -0.9
306,803 + Xcc-8004.317.1 0.48 -0.1
306,804 - Xcc-8004.317.1 0.48 +0.2
306,806 + Xcc-8004.317.1 0.48 -0.9
306,806 + Xcc-8004.317.1 0.48 +1.6
306,806 + Xcc-8004.317.1 0.48 +1.9
306,807 - Xcc-8004.317.1 0.48 +0.8
306,807 - Xcc-8004.317.1 0.48 +1.0
306,807 - Xcc-8004.317.1 0.48 +2.9
306,833 + Xcc-8004.317.1 0.49 -2.9
306,834 - Xcc-8004.317.1 0.49 +0.3
307,118 + Xcc-8004.317.1 0.63 +2.0
307,118 + Xcc-8004.317.1 0.63 -1.2
307,118 + Xcc-8004.317.1 0.63 +0.4
307,119 - Xcc-8004.317.1 0.63 -0.2
307,159 - Xcc-8004.317.1 0.65 +0.5
307,222 + Xcc-8004.317.1 0.68 +1.9
307,222 + Xcc-8004.317.1 0.68 -2.2
307,271 + Xcc-8004.317.1 0.70 -1.1
307,271 + Xcc-8004.317.1 0.70 +1.2
307,271 + Xcc-8004.317.1 0.70 +0.5
307,272 - Xcc-8004.317.1 0.70 -1.4
307,272 - Xcc-8004.317.1 0.70 -2.2
307,289 + Xcc-8004.317.1 0.71 -0.5
307,289 + Xcc-8004.317.1 0.71 -0.3
307,289 + Xcc-8004.317.1 0.71 -1.0
307,290 - Xcc-8004.317.1 0.71 +0.4
307,290 - Xcc-8004.317.1 0.71 +0.7
307,355 + Xcc-8004.317.1 0.74 -1.9
307,355 + Xcc-8004.317.1 0.74 -2.2
307,356 - Xcc-8004.317.1 0.74 -3.0
307,430 + Xcc-8004.317.1 0.78 -2.1
307,431 - Xcc-8004.317.1 0.78 +0.4
307,431 - Xcc-8004.317.1 0.78 +1.7
307,431 - Xcc-8004.317.1 0.78 -2.9
307,431 - Xcc-8004.317.1 0.78 +0.0
307,500 - Xcc-8004.317.1 0.81 -3.3
307,538 + Xcc-8004.317.1 0.83 +0.7
307,559 + Xcc-8004.317.1 0.84 +2.8
307,559 + Xcc-8004.317.1 0.84 -1.1
307,559 + Xcc-8004.317.1 0.84 -1.5
307,559 + Xcc-8004.317.1 0.84 +0.5
307,559 + Xcc-8004.317.1 0.84 +0.3
307,560 - Xcc-8004.317.1 0.84 +0.2
307,560 - Xcc-8004.317.1 0.84 -0.1
307,560 - Xcc-8004.317.1 0.84 +0.8
307,560 - Xcc-8004.317.1 0.84 +0.8
307,569 - Xcc-8004.317.1 0.84 +0.4
307,569 - Xcc-8004.317.1 0.84 +1.9
307,571 + Xcc-8004.317.1 0.85 +0.5
307,571 + Xcc-8004.317.1 0.85 -0.6
307,571 + Xcc-8004.317.1 0.85 -0.6
307,571 + Xcc-8004.317.1 0.85 +0.9
307,571 + Xcc-8004.317.1 0.85 +0.7
307,572 - Xcc-8004.317.1 0.85 -0.2
307,572 - Xcc-8004.317.1 0.85 +0.3
307,572 - Xcc-8004.317.1 0.85 +1.2
307,685 + -1.3
307,685 + +0.8
307,685 + +0.5
307,686 - -2.7
307,943 - -2.4
307,943 - +0.8
307,943 - -1.1
307,943 - -0.1
307,997 + -0.4
307,997 + +0.2
307,997 + +1.4
307,997 + -0.5
307,997 + +0.7
307,997 + -1.5
307,997 + -1.0
307,997 + +0.8
307,997 + -0.8
307,998 - -0.5
307,998 - -0.2
307,998 - -0.4
307,998 - -0.7
307,998 - +1.1
307,998 - -0.4
307,998 - +1.9
308,066 + +1.8
308,066 + -2.1
308,067 - -1.0
308,067 - -0.5
308,067 - +0.2
308,320 + Xcc-8004.318.1 0.16 -0.1
308,320 + Xcc-8004.318.1 0.16 +0.5
308,382 - Xcc-8004.318.1 0.19 +1.1
308,382 - Xcc-8004.318.1 0.19 +0.4
308,382 - Xcc-8004.318.1 0.19 -1.4
308,485 - Xcc-8004.318.1 0.24 -0.7
308,838 - Xcc-8004.318.1 0.41 -0.1
308,840 + Xcc-8004.318.1 0.41 -2.4
308,840 + Xcc-8004.318.1 0.41 +1.5
308,840 + Xcc-8004.318.1 0.41 +1.4
308,841 - Xcc-8004.318.1 0.41 -0.7
308,841 - Xcc-8004.318.1 0.41 +1.1
308,841 - Xcc-8004.318.1 0.41 -1.1

Or see this region's nucleotide sequence