Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2181.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2180.1 and Xcc-8004.2181.1 are separated by 14 nucleotidesXcc-8004.2181.1 and Xcc-8004.2182.1 are separated by 289 nucleotides Xcc-8004.2180.1: Xcc-8004.2180.1 - RND efflux system, membrane fusion protein CmeA, at 2,117,763 to 2,119,073 Xcc-8004.2180.1 Xcc-8004.2181.1: Xcc-8004.2181.1 - Transcriptional regulator, TetR (AcrR) family [USSDB4A], at 2,119,088 to 2,119,747 Xcc-8004.2181.1 Xcc-8004.2182.1: Xcc-8004.2182.1 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 2,120,037 to 2,125,046 Xcc-8004.2182.1 Position (kb) 2119 2120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 2118.169 kb on + strand, within Xcc-8004.2180.1at 2118.169 kb on + strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.170 kb on - strand, within Xcc-8004.2180.1at 2118.208 kb on - strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.451 kb on + strand, within Xcc-8004.2180.1at 2118.452 kb on - strand, within Xcc-8004.2180.1at 2118.452 kb on - strand, within Xcc-8004.2180.1at 2118.452 kb on - strand, within Xcc-8004.2180.1at 2118.452 kb on - strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.679 kb on + strand, within Xcc-8004.2180.1at 2118.680 kb on - strand, within Xcc-8004.2180.1at 2118.680 kb on - strand, within Xcc-8004.2180.1at 2118.680 kb on - strand, within Xcc-8004.2180.1at 2118.680 kb on - strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.733 kb on + strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.734 kb on - strand, within Xcc-8004.2180.1at 2118.847 kb on + strand, within Xcc-8004.2180.1at 2118.847 kb on + strand, within Xcc-8004.2180.1at 2118.848 kb on - strand, within Xcc-8004.2180.1at 2118.848 kb on - strand, within Xcc-8004.2180.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.159 kb on + strand, within Xcc-8004.2181.1at 2119.160 kb on - strand, within Xcc-8004.2181.1at 2119.160 kb on - strand, within Xcc-8004.2181.1at 2119.160 kb on - strand, within Xcc-8004.2181.1at 2119.160 kb on - strand, within Xcc-8004.2181.1at 2119.439 kb on + strand, within Xcc-8004.2181.1at 2119.439 kb on + strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.440 kb on - strand, within Xcc-8004.2181.1at 2119.590 kb on + strand, within Xcc-8004.2181.1at 2119.591 kb on - strand, within Xcc-8004.2181.1at 2119.591 kb on - strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.599 kb on + strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.600 kb on - strand, within Xcc-8004.2181.1at 2119.697 kb on - strandat 2119.697 kb on - strandat 2119.758 kb on + strandat 2119.758 kb on + strandat 2119.758 kb on + strandat 2119.758 kb on + strandat 2119.758 kb on + strandat 2119.759 kb on - strandat 2119.759 kb on - strandat 2119.759 kb on - strandat 2119.759 kb on - strandat 2119.759 kb on - strandat 2119.760 kb on + strandat 2119.761 kb on - strandat 2119.907 kb on + strandat 2119.908 kb on - strandat 2119.908 kb on - strandat 2119.908 kb on - strandat 2119.908 kb on - strandat 2119.968 kb on + strandat 2119.969 kb on - strandat 2119.999 kb on + strandat 2119.999 kb on + strandat 2120.367 kb on + strandat 2120.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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2,118,169 + Xcc-8004.2180.1 0.31 -2.2
2,118,169 + Xcc-8004.2180.1 0.31 -1.6
2,118,170 - Xcc-8004.2180.1 0.31 -1.5
2,118,170 - Xcc-8004.2180.1 0.31 -1.3
2,118,170 - Xcc-8004.2180.1 0.31 -1.8
2,118,170 - Xcc-8004.2180.1 0.31 -3.1
2,118,170 - Xcc-8004.2180.1 0.31 -1.0
2,118,170 - Xcc-8004.2180.1 0.31 -0.5
2,118,170 - Xcc-8004.2180.1 0.31 -0.5
2,118,170 - Xcc-8004.2180.1 0.31 +1.5
2,118,208 - Xcc-8004.2180.1 0.34 -3.4
2,118,451 + Xcc-8004.2180.1 0.52 +0.3
2,118,451 + Xcc-8004.2180.1 0.52 +0.6
2,118,451 + Xcc-8004.2180.1 0.52 -2.2
2,118,451 + Xcc-8004.2180.1 0.52 -0.1
2,118,451 + Xcc-8004.2180.1 0.52 -1.9
2,118,451 + Xcc-8004.2180.1 0.52 -2.7
2,118,451 + Xcc-8004.2180.1 0.52 -0.2
2,118,451 + Xcc-8004.2180.1 0.52 -1.0
2,118,451 + Xcc-8004.2180.1 0.52 -2.9
2,118,451 + Xcc-8004.2180.1 0.52 -2.3
2,118,451 + Xcc-8004.2180.1 0.52 -1.3
2,118,452 - Xcc-8004.2180.1 0.53 -2.0
2,118,452 - Xcc-8004.2180.1 0.53 -1.5
2,118,452 - Xcc-8004.2180.1 0.53 -2.9
2,118,452 - Xcc-8004.2180.1 0.53 -0.0
2,118,679 + Xcc-8004.2180.1 0.70 -0.4
2,118,679 + Xcc-8004.2180.1 0.70 -2.3
2,118,679 + Xcc-8004.2180.1 0.70 -1.8
2,118,679 + Xcc-8004.2180.1 0.70 -2.4
2,118,679 + Xcc-8004.2180.1 0.70 +0.8
2,118,679 + Xcc-8004.2180.1 0.70 -0.2
2,118,679 + Xcc-8004.2180.1 0.70 -1.6
2,118,679 + Xcc-8004.2180.1 0.70 -0.3
2,118,680 - Xcc-8004.2180.1 0.70 +0.6
2,118,680 - Xcc-8004.2180.1 0.70 -0.4
2,118,680 - Xcc-8004.2180.1 0.70 -1.3
2,118,680 - Xcc-8004.2180.1 0.70 +0.8
2,118,733 + Xcc-8004.2180.1 0.74 -1.7
2,118,733 + Xcc-8004.2180.1 0.74 -1.8
2,118,733 + Xcc-8004.2180.1 0.74 -3.0
2,118,733 + Xcc-8004.2180.1 0.74 -1.8
2,118,733 + Xcc-8004.2180.1 0.74 -0.6
2,118,733 + Xcc-8004.2180.1 0.74 -0.2
2,118,733 + Xcc-8004.2180.1 0.74 +0.3
2,118,733 + Xcc-8004.2180.1 0.74 -0.5
2,118,733 + Xcc-8004.2180.1 0.74 -2.8
2,118,733 + Xcc-8004.2180.1 0.74 -0.9
2,118,733 + Xcc-8004.2180.1 0.74 -1.6
2,118,733 + Xcc-8004.2180.1 0.74 +1.0
2,118,734 - Xcc-8004.2180.1 0.74 -1.0
2,118,734 - Xcc-8004.2180.1 0.74 -0.9
2,118,734 - Xcc-8004.2180.1 0.74 -0.4
2,118,734 - Xcc-8004.2180.1 0.74 +0.1
2,118,734 - Xcc-8004.2180.1 0.74 -1.7
2,118,734 - Xcc-8004.2180.1 0.74 -1.9
2,118,734 - Xcc-8004.2180.1 0.74 -2.7
2,118,734 - Xcc-8004.2180.1 0.74 -2.5
2,118,734 - Xcc-8004.2180.1 0.74 -1.7
2,118,847 + Xcc-8004.2180.1 0.83 -0.0
2,118,847 + Xcc-8004.2180.1 0.83 -1.4
2,118,848 - Xcc-8004.2180.1 0.83 -1.5
2,118,848 - Xcc-8004.2180.1 0.83 -1.0
2,119,159 + Xcc-8004.2181.1 0.11 -3.6
2,119,159 + Xcc-8004.2181.1 0.11 -0.1
2,119,159 + Xcc-8004.2181.1 0.11 +0.0
2,119,159 + Xcc-8004.2181.1 0.11 +0.7
2,119,159 + Xcc-8004.2181.1 0.11 -1.8
2,119,159 + Xcc-8004.2181.1 0.11 +0.6
2,119,159 + Xcc-8004.2181.1 0.11 +0.3
2,119,160 - Xcc-8004.2181.1 0.11 -0.4
2,119,160 - Xcc-8004.2181.1 0.11 -0.2
2,119,160 - Xcc-8004.2181.1 0.11 -2.5
2,119,160 - Xcc-8004.2181.1 0.11 -1.1
2,119,439 + Xcc-8004.2181.1 0.53 +0.1
2,119,439 + Xcc-8004.2181.1 0.53 -0.2
2,119,440 - Xcc-8004.2181.1 0.53 -1.8
2,119,440 - Xcc-8004.2181.1 0.53 -1.7
2,119,440 - Xcc-8004.2181.1 0.53 +0.5
2,119,440 - Xcc-8004.2181.1 0.53 +1.0
2,119,440 - Xcc-8004.2181.1 0.53 +0.2
2,119,440 - Xcc-8004.2181.1 0.53 +1.4
2,119,590 + Xcc-8004.2181.1 0.76 -0.0
2,119,591 - Xcc-8004.2181.1 0.76 +1.3
2,119,591 - Xcc-8004.2181.1 0.76 -0.1
2,119,599 + Xcc-8004.2181.1 0.77 -1.0
2,119,599 + Xcc-8004.2181.1 0.77 -3.3
2,119,599 + Xcc-8004.2181.1 0.77 +0.7
2,119,599 + Xcc-8004.2181.1 0.77 -1.7
2,119,599 + Xcc-8004.2181.1 0.77 -1.0
2,119,599 + Xcc-8004.2181.1 0.77 +0.1
2,119,600 - Xcc-8004.2181.1 0.78 -1.7
2,119,600 - Xcc-8004.2181.1 0.78 +0.6
2,119,600 - Xcc-8004.2181.1 0.78 +8.3
2,119,600 - Xcc-8004.2181.1 0.78 +1.2
2,119,600 - Xcc-8004.2181.1 0.78 +1.2
2,119,600 - Xcc-8004.2181.1 0.78 -0.5
2,119,697 - +0.3
2,119,697 - -0.7
2,119,758 + +0.6
2,119,758 + -0.2
2,119,758 + -1.2
2,119,758 + +1.4
2,119,758 + +0.7
2,119,759 - -0.6
2,119,759 - -1.8
2,119,759 - -0.3
2,119,759 - +0.6
2,119,759 - +1.2
2,119,760 + +1.2
2,119,761 - -0.7
2,119,907 + +1.2
2,119,908 - -2.3
2,119,908 - +1.7
2,119,908 - -2.0
2,119,908 - +2.2
2,119,968 + +1.0
2,119,969 - +0.4
2,119,999 + -0.4
2,119,999 + +0.5
2,120,367 + -0.0
2,120,367 + +0.4

Or see this region's nucleotide sequence