Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1989.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1988.1 and Xcc-8004.1989.1 overlap by 4 nucleotidesXcc-8004.1989.1 and Xcc-8004.1990.1 overlap by 4 nucleotides Xcc-8004.1988.1: Xcc-8004.1988.1 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 1,912,019 to 1,913,353 Xcc-8004.1988.1 Xcc-8004.1989.1: Xcc-8004.1989.1 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 1,913,350 to 1,915,584 Xcc-8004.1989.1 Xcc-8004.1990.1: Xcc-8004.1990.1 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 1,915,581 to 1,916,672 Xcc-8004.1990.1 Position (kb) 1913 1914 1915 1916Strain fitness (log2 ratio) -1 0 1at 1913.300 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,913,300 + -1.4

Or see this region's nucleotide sequence