Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1837.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1835.1 and Xcc-8004.1836.1 are separated by 176 nucleotidesXcc-8004.1836.1 and Xcc-8004.1837.1 are separated by 21 nucleotidesXcc-8004.1837.1 and Xcc-8004.1838.1 are separated by 10 nucleotidesXcc-8004.1838.1 and Xcc-8004.1839.1 are separated by 29 nucleotides Xcc-8004.1835.1: Xcc-8004.1835.1 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 1,770,277 to 1,771,455 Xcc-8004.1835.1 Xcc-8004.1836.1: Xcc-8004.1836.1 - hypothetical protein, at 1,771,632 to 1,771,745 Xcc-8004.1836.1 Xcc-8004.1837.1: Xcc-8004.1837.1 - FIG01210987: hypothetical protein, at 1,771,767 to 1,771,937 Xcc-8004.1837.1 Xcc-8004.1838.1: Xcc-8004.1838.1 - FIG002958: hypothetical protein, at 1,771,948 to 1,772,343 Xcc-8004.1838.1 Xcc-8004.1839.1: Xcc-8004.1839.1 - FIG01210863: hypothetical protein, at 1,772,373 to 1,773,020 Xcc-8004.1839.1 Position (kb) 1771 1772Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.093 kb on + strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.094 kb on - strand, within Xcc-8004.1835.1at 1771.274 kb on - strand, within Xcc-8004.1835.1at 1771.309 kb on + strand, within Xcc-8004.1835.1at 1771.309 kb on + strand, within Xcc-8004.1835.1at 1771.309 kb on + strand, within Xcc-8004.1835.1at 1771.310 kb on - strand, within Xcc-8004.1835.1at 1771.310 kb on - strand, within Xcc-8004.1835.1at 1771.310 kb on - strand, within Xcc-8004.1835.1at 1771.339 kb on + strandat 1771.340 kb on - strandat 1771.340 kb on - strandat 1771.340 kb on - strandat 1771.613 kb on + strandat 1771.614 kb on - strandat 1771.614 kb on - strandat 1771.614 kb on - strandat 1771.614 kb on - strandat 1771.729 kb on + strand, within Xcc-8004.1836.1at 1771.729 kb on + strand, within Xcc-8004.1836.1at 1771.729 kb on + strand, within Xcc-8004.1836.1at 1771.730 kb on - strand, within Xcc-8004.1836.1at 1771.730 kb on - strand, within Xcc-8004.1836.1at 1771.730 kb on - strand, within Xcc-8004.1836.1at 1771.730 kb on - strand, within Xcc-8004.1836.1at 1772.138 kb on - strand, within Xcc-8004.1838.1at 1772.157 kb on - strand, within Xcc-8004.1838.1at 1772.268 kb on + strand, within Xcc-8004.1838.1at 1772.343 kb on + strandat 1772.343 kb on + strandat 1772.344 kb on - strandat 1772.344 kb on - strandat 1772.344 kb on - strandat 1772.344 kb on - strandat 1772.344 kb on - strandat 1772.375 kb on - strandat 1772.485 kb on - strand, within Xcc-8004.1839.1at 1772.485 kb on - strand, within Xcc-8004.1839.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,771,093 + Xcc-8004.1835.1 0.69 +1.6
1,771,093 + Xcc-8004.1835.1 0.69 +1.2
1,771,093 + Xcc-8004.1835.1 0.69 +1.9
1,771,093 + Xcc-8004.1835.1 0.69 +1.6
1,771,093 + Xcc-8004.1835.1 0.69 +0.1
1,771,093 + Xcc-8004.1835.1 0.69 +1.3
1,771,093 + Xcc-8004.1835.1 0.69 +0.8
1,771,094 - Xcc-8004.1835.1 0.69 +1.0
1,771,094 - Xcc-8004.1835.1 0.69 -1.0
1,771,094 - Xcc-8004.1835.1 0.69 -2.0
1,771,094 - Xcc-8004.1835.1 0.69 +1.2
1,771,094 - Xcc-8004.1835.1 0.69 -0.6
1,771,274 - Xcc-8004.1835.1 0.85 +0.1
1,771,309 + Xcc-8004.1835.1 0.88 -2.4
1,771,309 + Xcc-8004.1835.1 0.88 -0.9
1,771,309 + Xcc-8004.1835.1 0.88 -0.8
1,771,310 - Xcc-8004.1835.1 0.88 -1.1
1,771,310 - Xcc-8004.1835.1 0.88 -0.5
1,771,310 - Xcc-8004.1835.1 0.88 -0.0
1,771,339 + -0.7
1,771,340 - -2.2
1,771,340 - -0.9
1,771,340 - -0.2
1,771,613 + +0.8
1,771,614 - +0.0
1,771,614 - +0.8
1,771,614 - +0.0
1,771,614 - +2.3
1,771,729 + Xcc-8004.1836.1 0.85 -0.0
1,771,729 + Xcc-8004.1836.1 0.85 +1.2
1,771,729 + Xcc-8004.1836.1 0.85 -0.4
1,771,730 - Xcc-8004.1836.1 0.86 +0.4
1,771,730 - Xcc-8004.1836.1 0.86 +1.5
1,771,730 - Xcc-8004.1836.1 0.86 +1.9
1,771,730 - Xcc-8004.1836.1 0.86 +0.3
1,772,138 - Xcc-8004.1838.1 0.48 -0.3
1,772,157 - Xcc-8004.1838.1 0.53 +0.6
1,772,268 + Xcc-8004.1838.1 0.81 -1.1
1,772,343 + -0.3
1,772,343 + +1.6
1,772,344 - -0.6
1,772,344 - -0.8
1,772,344 - -1.0
1,772,344 - +0.8
1,772,344 - -1.4
1,772,375 - +3.3
1,772,485 - Xcc-8004.1839.1 0.17 -0.8
1,772,485 - Xcc-8004.1839.1 0.17 +1.0

Or see this region's nucleotide sequence