Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.16.1 and Xcc-8004.17.1 are separated by 222 nucleotides Xcc-8004.17.1 and Xcc-8004.18.1 are separated by 7 nucleotides Xcc-8004.18.1 and Xcc-8004.19.1 are separated by 74 nucleotides
Xcc-8004.16.1: Xcc-8004.16.1 - hypothetical protein, at 13,573 to 13,890
Xcc-8004.16.1
Xcc-8004.17.1: Xcc-8004.17.1 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 14,113 to 14,883
Xcc-8004.17.1
Xcc-8004.18.1: Xcc-8004.18.1 - FIG01209949: hypothetical protein, at 14,891 to 15,160
Xcc-8004.18.1
Xcc-8004.19.1: Xcc-8004.19.1 - Cardiolipin synthetase (EC 2.7.8.-), at 15,235 to 16,695
Xcc-8004.19.1
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.205 kb on - strand at 13.205 kb on - strand at 13.210 kb on + strand at 13.211 kb on - strand at 13.258 kb on - strand at 13.258 kb on - strand at 13.261 kb on + strand at 13.262 kb on - strand at 13.262 kb on - strand at 13.262 kb on - strand at 13.262 kb on - strand at 13.317 kb on + strand at 13.317 kb on + strand at 13.317 kb on + strand at 13.318 kb on - strand at 13.334 kb on + strand at 13.335 kb on - strand at 13.335 kb on - strand at 13.375 kb on + strand at 13.376 kb on - strand at 13.376 kb on - strand at 13.376 kb on - strand at 13.620 kb on + strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.621 kb on - strand, within Xcc-8004.16.1 at 13.736 kb on + strand, within Xcc-8004.16.1 at 13.740 kb on + strand, within Xcc-8004.16.1 at 13.740 kb on + strand, within Xcc-8004.16.1 at 13.740 kb on + strand, within Xcc-8004.16.1 at 13.740 kb on + strand, within Xcc-8004.16.1 at 13.740 kb on + strand, within Xcc-8004.16.1 at 13.741 kb on - strand, within Xcc-8004.16.1 at 13.741 kb on - strand, within Xcc-8004.16.1 at 13.741 kb on - strand, within Xcc-8004.16.1 at 13.776 kb on + strand, within Xcc-8004.16.1 at 13.797 kb on + strand, within Xcc-8004.16.1 at 13.797 kb on + strand, within Xcc-8004.16.1 at 13.797 kb on + strand, within Xcc-8004.16.1 at 13.797 kb on + strand, within Xcc-8004.16.1 at 13.797 kb on + strand, within Xcc-8004.16.1 at 13.798 kb on - strand, within Xcc-8004.16.1 at 13.798 kb on - strand, within Xcc-8004.16.1 at 13.798 kb on - strand, within Xcc-8004.16.1 at 13.798 kb on - strand, within Xcc-8004.16.1 at 13.820 kb on + strand, within Xcc-8004.16.1 at 13.820 kb on + strand, within Xcc-8004.16.1 at 13.821 kb on - strand, within Xcc-8004.16.1 at 13.821 kb on - strand, within Xcc-8004.16.1 at 13.880 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.967 kb on - strand at 13.967 kb on - strand at 13.991 kb on + strand at 14.101 kb on + strand at 14.143 kb on - strand at 14.153 kb on + strand at 14.183 kb on + strand at 14.183 kb on + strand at 14.183 kb on + strand at 14.393 kb on + strand, within Xcc-8004.17.1 at 14.393 kb on + strand, within Xcc-8004.17.1 at 14.394 kb on - strand, within Xcc-8004.17.1 at 14.394 kb on - strand, within Xcc-8004.17.1 at 14.394 kb on - strand, within Xcc-8004.17.1 at 14.394 kb on - strand, within Xcc-8004.17.1 at 14.806 kb on + strand, within Xcc-8004.17.1 at 14.806 kb on + strand, within Xcc-8004.17.1 at 14.806 kb on + strand, within Xcc-8004.17.1 at 14.806 kb on + strand, within Xcc-8004.17.1 at 14.806 kb on + strand, within Xcc-8004.17.1 at 14.807 kb on - strand at 14.807 kb on - strand at 14.807 kb on - strand at 14.807 kb on - strand at 14.842 kb on + strand at 14.843 kb on - strand at 15.139 kb on + strand at 15.190 kb on + strand at 15.190 kb on + strand at 15.191 kb on - strand at 15.191 kb on - strand at 15.191 kb on - strand at 15.251 kb on - strand at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.506 kb on + strand, within Xcc-8004.19.1 at 15.507 kb on - strand, within Xcc-8004.19.1 at 15.507 kb on - strand, within Xcc-8004.19.1 at 15.507 kb on - strand, within Xcc-8004.19.1 at 15.507 kb on - strand, within Xcc-8004.19.1 at 15.510 kb on + strand, within Xcc-8004.19.1 at 15.510 kb on + strand, within Xcc-8004.19.1 at 15.510 kb on + strand, within Xcc-8004.19.1 at 15.510 kb on + strand, within Xcc-8004.19.1 at 15.510 kb on + strand, within Xcc-8004.19.1 at 15.511 kb on - strand, within Xcc-8004.19.1 at 15.511 kb on - strand, within Xcc-8004.19.1 at 15.542 kb on + strand, within Xcc-8004.19.1 at 15.542 kb on + strand, within Xcc-8004.19.1 at 15.542 kb on + strand, within Xcc-8004.19.1 at 15.557 kb on + strand, within Xcc-8004.19.1 at 15.557 kb on + strand, within Xcc-8004.19.1 at 15.557 kb on + strand, within Xcc-8004.19.1 at 15.558 kb on - strand, within Xcc-8004.19.1 at 15.558 kb on - strand, within Xcc-8004.19.1 at 15.558 kb on - strand, within Xcc-8004.19.1 at 15.665 kb on + strand, within Xcc-8004.19.1 at 15.666 kb on - strand, within Xcc-8004.19.1 at 15.666 kb on - strand, within Xcc-8004.19.1 at 15.858 kb on - strand, within Xcc-8004.19.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 13,205 - -0.6 13,205 - -0.4 13,210 + +0.1 13,211 - -1.4 13,258 - -0.2 13,258 - +0.1 13,261 + +1.9 13,262 - -0.1 13,262 - -1.6 13,262 - +0.2 13,262 - -0.4 13,317 + -1.9 13,317 + +0.9 13,317 + -0.9 13,318 - +0.3 13,334 + +1.0 13,335 - -0.6 13,335 - -1.6 13,375 + +0.1 13,376 - +0.1 13,376 - +0.6 13,376 - +0.2 13,620 + Xcc-8004.16.1 0.15 +0.8 13,621 - Xcc-8004.16.1 0.15 -0.9 13,621 - Xcc-8004.16.1 0.15 +0.2 13,621 - Xcc-8004.16.1 0.15 -1.7 13,621 - Xcc-8004.16.1 0.15 +2.4 13,621 - Xcc-8004.16.1 0.15 -1.1 13,621 - Xcc-8004.16.1 0.15 +1.5 13,736 + Xcc-8004.16.1 0.51 +0.3 13,740 + Xcc-8004.16.1 0.53 +0.0 13,740 + Xcc-8004.16.1 0.53 +0.4 13,740 + Xcc-8004.16.1 0.53 -3.5 13,740 + Xcc-8004.16.1 0.53 +0.9 13,740 + Xcc-8004.16.1 0.53 +0.4 13,741 - Xcc-8004.16.1 0.53 +0.8 13,741 - Xcc-8004.16.1 0.53 +2.7 13,741 - Xcc-8004.16.1 0.53 +0.1 13,776 + Xcc-8004.16.1 0.64 -4.1 13,797 + Xcc-8004.16.1 0.70 +0.4 13,797 + Xcc-8004.16.1 0.70 +0.6 13,797 + Xcc-8004.16.1 0.70 +0.5 13,797 + Xcc-8004.16.1 0.70 +1.3 13,797 + Xcc-8004.16.1 0.70 +0.1 13,798 - Xcc-8004.16.1 0.71 +0.9 13,798 - Xcc-8004.16.1 0.71 -0.2 13,798 - Xcc-8004.16.1 0.71 -0.2 13,798 - Xcc-8004.16.1 0.71 +0.2 13,820 + Xcc-8004.16.1 0.78 +0.6 13,820 + Xcc-8004.16.1 0.78 +0.1 13,821 - Xcc-8004.16.1 0.78 +0.3 13,821 - Xcc-8004.16.1 0.78 -0.1 13,880 + +0.9 13,895 + -0.2 13,895 + +1.5 13,967 - +0.0 13,967 - +0.3 13,991 + -0.1 14,101 + -1.5 14,143 - -0.2 14,153 + -1.1 14,183 + -0.5 14,183 + -0.6 14,183 + -0.7 14,393 + Xcc-8004.17.1 0.36 -2.6 14,393 + Xcc-8004.17.1 0.36 -3.2 14,394 - Xcc-8004.17.1 0.36 -0.6 14,394 - Xcc-8004.17.1 0.36 -2.8 14,394 - Xcc-8004.17.1 0.36 -3.0 14,394 - Xcc-8004.17.1 0.36 -2.2 14,806 + Xcc-8004.17.1 0.90 -2.8 14,806 + Xcc-8004.17.1 0.90 -0.9 14,806 + Xcc-8004.17.1 0.90 -1.9 14,806 + Xcc-8004.17.1 0.90 -1.2 14,806 + Xcc-8004.17.1 0.90 -1.7 14,807 - -1.7 14,807 - -2.4 14,807 - -2.5 14,807 - -1.9 14,842 + -0.3 14,843 - -3.1 15,139 + -0.3 15,190 + -0.2 15,190 + +0.4 15,191 - +0.2 15,191 - +0.1 15,191 - +0.7 15,251 - -0.7 15,506 + Xcc-8004.19.1 0.19 -1.3 15,506 + Xcc-8004.19.1 0.19 -1.3 15,506 + Xcc-8004.19.1 0.19 +0.7 15,506 + Xcc-8004.19.1 0.19 +0.9 15,506 + Xcc-8004.19.1 0.19 -0.4 15,506 + Xcc-8004.19.1 0.19 -2.4 15,506 + Xcc-8004.19.1 0.19 +1.1 15,507 - Xcc-8004.19.1 0.19 -0.5 15,507 - Xcc-8004.19.1 0.19 -2.2 15,507 - Xcc-8004.19.1 0.19 -1.8 15,507 - Xcc-8004.19.1 0.19 +0.0 15,510 + Xcc-8004.19.1 0.19 -1.7 15,510 + Xcc-8004.19.1 0.19 -0.5 15,510 + Xcc-8004.19.1 0.19 +3.0 15,510 + Xcc-8004.19.1 0.19 +0.5 15,510 + Xcc-8004.19.1 0.19 +0.5 15,511 - Xcc-8004.19.1 0.19 -0.4 15,511 - Xcc-8004.19.1 0.19 +0.4 15,542 + Xcc-8004.19.1 0.21 -1.7 15,542 + Xcc-8004.19.1 0.21 -0.7 15,542 + Xcc-8004.19.1 0.21 -3.5 15,557 + Xcc-8004.19.1 0.22 -2.2 15,557 + Xcc-8004.19.1 0.22 -0.3 15,557 + Xcc-8004.19.1 0.22 +0.9 15,558 - Xcc-8004.19.1 0.22 -0.3 15,558 - Xcc-8004.19.1 0.22 +2.5 15,558 - Xcc-8004.19.1 0.22 -0.1 15,665 + Xcc-8004.19.1 0.29 +1.7 15,666 - Xcc-8004.19.1 0.30 +0.2 15,666 - Xcc-8004.19.1 0.30 -0.4 15,858 - Xcc-8004.19.1 0.43 +1.1
Or see this region's nucleotide sequence