Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1663.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1662.1 and Xcc-8004.1663.1 are separated by 39 nucleotidesXcc-8004.1663.1 and Xcc-8004.1664.1 overlap by 1 nucleotidesXcc-8004.1664.1 and Xcc-8004.1665.1 overlap by 23 nucleotides Xcc-8004.1662.1: Xcc-8004.1662.1 - RNA polymerase sigma-54 factor RpoN, at 1,600,647 to 1,602,083 Xcc-8004.1662.1 Xcc-8004.1663.1: Xcc-8004.1663.1 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 1,602,123 to 1,602,842 Xcc-8004.1663.1 Xcc-8004.1664.1: Xcc-8004.1664.1 - LptA, protein essential for LPS transport across the periplasm, at 1,602,842 to 1,603,378 Xcc-8004.1664.1 Xcc-8004.1665.1: Xcc-8004.1665.1 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 1,603,356 to 1,603,931 Xcc-8004.1665.1 Position (kb) 1602 1603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1602.009 kb on + strandat 1602.009 kb on + strandat 1602.010 kb on - strandat 1602.010 kb on - strandat 1602.010 kb on - strandat 1602.058 kb on - strandat 1602.058 kb on - strandat 1602.058 kb on - strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.105 kb on + strandat 1602.105 kb on + strandat 1602.105 kb on + strandat 1602.106 kb on - strandat 1602.106 kb on - strandat 1602.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,601,262 + Xcc-8004.1662.1 0.43 -1.6
1,601,262 + Xcc-8004.1662.1 0.43 -1.2
1,601,262 + Xcc-8004.1662.1 0.43 -2.8
1,601,262 + Xcc-8004.1662.1 0.43 -0.9
1,601,262 + Xcc-8004.1662.1 0.43 -1.3
1,601,262 + Xcc-8004.1662.1 0.43 -1.3
1,601,262 + Xcc-8004.1662.1 0.43 -3.3
1,601,263 - Xcc-8004.1662.1 0.43 -3.1
1,601,263 - Xcc-8004.1662.1 0.43 -0.4
1,601,263 - Xcc-8004.1662.1 0.43 -1.8
1,601,266 + Xcc-8004.1662.1 0.43 -3.5
1,601,266 + Xcc-8004.1662.1 0.43 -4.0
1,601,266 + Xcc-8004.1662.1 0.43 +0.4
1,601,266 + Xcc-8004.1662.1 0.43 -2.3
1,601,266 + Xcc-8004.1662.1 0.43 -0.3
1,601,266 + Xcc-8004.1662.1 0.43 -2.5
1,601,266 + Xcc-8004.1662.1 0.43 -4.2
1,601,266 + Xcc-8004.1662.1 0.43 -2.7
1,601,266 + Xcc-8004.1662.1 0.43 -1.8
1,601,266 + Xcc-8004.1662.1 0.43 -0.2
1,601,266 + Xcc-8004.1662.1 0.43 -0.9
1,601,266 + Xcc-8004.1662.1 0.43 -1.3
1,601,266 + Xcc-8004.1662.1 0.43 -3.5
1,601,266 + Xcc-8004.1662.1 0.43 -2.2
1,601,266 + Xcc-8004.1662.1 0.43 -1.4
1,601,266 + Xcc-8004.1662.1 0.43 -1.1
1,601,266 + Xcc-8004.1662.1 0.43 -2.8
1,601,266 + Xcc-8004.1662.1 0.43 -1.6
1,601,266 + Xcc-8004.1662.1 0.43 -1.9
1,601,266 + Xcc-8004.1662.1 0.43 -1.6
1,601,267 - Xcc-8004.1662.1 0.43 -1.3
1,601,267 - Xcc-8004.1662.1 0.43 -2.1
1,601,267 - Xcc-8004.1662.1 0.43 -2.5
1,601,267 - Xcc-8004.1662.1 0.43 -0.9
1,601,267 - Xcc-8004.1662.1 0.43 +1.1
1,601,267 - Xcc-8004.1662.1 0.43 +1.0
1,601,267 - Xcc-8004.1662.1 0.43 -1.0
1,601,267 - Xcc-8004.1662.1 0.43 -2.5
1,601,267 - Xcc-8004.1662.1 0.43 +1.6
1,601,267 - Xcc-8004.1662.1 0.43 -1.0
1,601,267 - Xcc-8004.1662.1 0.43 -2.0
1,601,267 - Xcc-8004.1662.1 0.43 -1.0
1,601,267 - Xcc-8004.1662.1 0.43 -2.2
1,601,267 - Xcc-8004.1662.1 0.43 +0.0
1,601,267 - Xcc-8004.1662.1 0.43 -4.4
1,601,267 - Xcc-8004.1662.1 0.43 +1.3
1,601,267 - Xcc-8004.1662.1 0.43 -2.0
1,601,267 - Xcc-8004.1662.1 0.43 -2.3
1,601,267 - Xcc-8004.1662.1 0.43 -3.4
1,601,267 - Xcc-8004.1662.1 0.43 -1.8
1,601,267 - Xcc-8004.1662.1 0.43 -3.7
1,601,267 - Xcc-8004.1662.1 0.43 -2.5
1,601,267 - Xcc-8004.1662.1 0.43 -2.7
1,601,267 - Xcc-8004.1662.1 0.43 -2.3
1,601,267 - Xcc-8004.1662.1 0.43 -1.3
1,601,267 - Xcc-8004.1662.1 0.43 -2.4
1,602,009 + -1.1
1,602,009 + -2.7
1,602,010 - -2.3
1,602,010 - -3.3
1,602,010 - -2.0
1,602,058 - -1.5
1,602,058 - -3.2
1,602,058 - -1.0
1,602,092 + +1.0
1,602,092 + -0.4
1,602,092 + +0.3
1,602,092 + -1.7
1,602,092 + -1.2
1,602,092 + +1.0
1,602,093 - -0.7
1,602,093 - +0.6
1,602,093 - -1.2
1,602,093 - -2.6
1,602,093 - +0.9
1,602,093 - -1.6
1,602,105 + -2.9
1,602,105 + -3.9
1,602,105 + -3.7
1,602,106 - -0.1
1,602,106 - +0.7
1,602,106 - +1.0

Or see this region's nucleotide sequence