Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1579.1 and Xcc-8004.1580.1 are separated by 138 nucleotides Xcc-8004.1580.1 and Xcc-8004.1581.1 are separated by 94 nucleotides
Xcc-8004.1579.1: Xcc-8004.1579.1 - Hydrolase, at 1,516,638 to 1,517,561
Xcc-8004.1579.1
Xcc-8004.1580.1: Xcc-8004.1580.1 - hypothetical protein, at 1,517,700 to 1,518,308
Xcc-8004.1580.1
Xcc-8004.1581.1: Xcc-8004.1581.1 - hypothetical protein, at 1,518,403 to 1,521,174
Xcc-8004.1581.1
Position (kb) 1517
1518
1519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1516.714 kb on + strand at 1516.714 kb on + strand at 1516.714 kb on + strand at 1516.884 kb on + strand, within Xcc-8004.1579.1 at 1516.884 kb on + strand, within Xcc-8004.1579.1 at 1516.885 kb on - strand, within Xcc-8004.1579.1 at 1516.885 kb on - strand, within Xcc-8004.1579.1 at 1516.929 kb on - strand, within Xcc-8004.1579.1 at 1517.050 kb on + strand, within Xcc-8004.1579.1 at 1517.050 kb on + strand, within Xcc-8004.1579.1 at 1517.051 kb on - strand, within Xcc-8004.1579.1 at 1517.141 kb on + strand, within Xcc-8004.1579.1 at 1517.141 kb on + strand, within Xcc-8004.1579.1 at 1517.241 kb on + strand, within Xcc-8004.1579.1 at 1517.241 kb on + strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.242 kb on - strand, within Xcc-8004.1579.1 at 1517.294 kb on + strand, within Xcc-8004.1579.1 at 1517.311 kb on + strand, within Xcc-8004.1579.1 at 1517.377 kb on + strand, within Xcc-8004.1579.1 at 1517.448 kb on + strand, within Xcc-8004.1579.1 at 1517.448 kb on + strand, within Xcc-8004.1579.1 at 1517.448 kb on + strand, within Xcc-8004.1579.1 at 1517.544 kb on - strand at 1517.544 kb on - strand at 1517.565 kb on + strand at 1517.566 kb on - strand at 1517.566 kb on - strand at 1517.572 kb on - strand at 1517.597 kb on + strand at 1517.598 kb on - strand at 1517.598 kb on - strand at 1517.662 kb on + strand at 1517.663 kb on - strand at 1517.663 kb on - strand at 1517.663 kb on - strand at 1517.663 kb on - strand at 1517.663 kb on - strand at 1517.663 kb on - strand at 1517.682 kb on + strand at 1517.688 kb on + strand at 1517.688 kb on + strand at 1517.688 kb on + strand at 1518.340 kb on - strand at 1518.349 kb on + strand at 1518.349 kb on + strand at 1518.349 kb on + strand at 1518.350 kb on - strand at 1518.350 kb on - strand at 1518.350 kb on - strand at 1518.355 kb on + strand at 1518.355 kb on + strand at 1518.356 kb on - strand at 1518.356 kb on - strand at 1518.401 kb on + strand at 1518.401 kb on + strand at 1518.401 kb on + strand at 1518.401 kb on + strand at 1518.402 kb on - strand at 1518.402 kb on - strand at 1518.402 kb on - strand at 1518.419 kb on + strand at 1518.419 kb on + strand at 1518.420 kb on - strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.428 kb on + strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.429 kb on - strand at 1518.434 kb on + strand at 1518.435 kb on - strand at 1518.452 kb on + strand at 1518.453 kb on - strand at 1518.453 kb on - strand at 1518.453 kb on - strand at 1518.453 kb on - strand at 1518.485 kb on + strand at 1518.485 kb on + strand at 1518.485 kb on + strand at 1518.486 kb on - strand at 1518.486 kb on - strand at 1518.557 kb on + strand at 1518.578 kb on + strand at 1518.578 kb on + strand at 1518.578 kb on + strand at 1518.579 kb on - strand at 1518.579 kb on - strand at 1518.579 kb on - strand at 1518.647 kb on + strand at 1518.647 kb on + strand at 1518.647 kb on + strand at 1518.647 kb on + strand at 1518.647 kb on + strand at 1518.647 kb on + strand at 1518.648 kb on - strand at 1518.648 kb on - strand at 1518.648 kb on - strand at 1518.648 kb on - strand at 1518.648 kb on - strand at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.699 kb on + strand, within Xcc-8004.1581.1 at 1518.700 kb on - strand, within Xcc-8004.1581.1 at 1518.700 kb on - strand, within Xcc-8004.1581.1 at 1518.700 kb on - strand, within Xcc-8004.1581.1 at 1518.700 kb on - strand, within Xcc-8004.1581.1 at 1518.701 kb on + strand, within Xcc-8004.1581.1 at 1518.701 kb on + strand, within Xcc-8004.1581.1 at 1518.702 kb on - strand, within Xcc-8004.1581.1 at 1518.702 kb on - strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.749 kb on + strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.750 kb on - strand, within Xcc-8004.1581.1 at 1518.791 kb on + strand, within Xcc-8004.1581.1 at 1518.791 kb on + strand, within Xcc-8004.1581.1 at 1518.854 kb on + strand, within Xcc-8004.1581.1 at 1518.854 kb on + strand, within Xcc-8004.1581.1 at 1518.854 kb on + strand, within Xcc-8004.1581.1 at 1518.854 kb on + strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.855 kb on - strand, within Xcc-8004.1581.1 at 1518.908 kb on + strand, within Xcc-8004.1581.1 at 1518.908 kb on + strand, within Xcc-8004.1581.1 at 1518.909 kb on - strand, within Xcc-8004.1581.1 at 1518.909 kb on - strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.941 kb on + strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.942 kb on - strand, within Xcc-8004.1581.1 at 1518.979 kb on - strand, within Xcc-8004.1581.1 at 1518.986 kb on + strand, within Xcc-8004.1581.1 at 1518.986 kb on + strand, within Xcc-8004.1581.1 at 1518.986 kb on + strand, within Xcc-8004.1581.1 at 1518.987 kb on - strand, within Xcc-8004.1581.1 at 1518.987 kb on - strand, within Xcc-8004.1581.1 at 1518.987 kb on - strand, within Xcc-8004.1581.1 at 1519.001 kb on + strand, within Xcc-8004.1581.1 at 1519.002 kb on - strand, within Xcc-8004.1581.1 at 1519.002 kb on - strand, within Xcc-8004.1581.1 at 1519.018 kb on + strand, within Xcc-8004.1581.1 at 1519.018 kb on + strand, within Xcc-8004.1581.1 at 1519.019 kb on - strand, within Xcc-8004.1581.1 at 1519.032 kb on - strand, within Xcc-8004.1581.1 at 1519.185 kb on + strand, within Xcc-8004.1581.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 1,516,714 + -1.9 1,516,714 + -1.5 1,516,714 + +0.9 1,516,884 + Xcc-8004.1579.1 0.27 -1.4 1,516,884 + Xcc-8004.1579.1 0.27 -2.7 1,516,885 - Xcc-8004.1579.1 0.27 -0.9 1,516,885 - Xcc-8004.1579.1 0.27 +0.2 1,516,929 - Xcc-8004.1579.1 0.31 +0.2 1,517,050 + Xcc-8004.1579.1 0.45 -0.7 1,517,050 + Xcc-8004.1579.1 0.45 -1.7 1,517,051 - Xcc-8004.1579.1 0.45 +0.2 1,517,141 + Xcc-8004.1579.1 0.54 +1.0 1,517,141 + Xcc-8004.1579.1 0.54 +1.4 1,517,241 + Xcc-8004.1579.1 0.65 -0.8 1,517,241 + Xcc-8004.1579.1 0.65 +0.7 1,517,242 - Xcc-8004.1579.1 0.65 +1.4 1,517,242 - Xcc-8004.1579.1 0.65 -0.8 1,517,242 - Xcc-8004.1579.1 0.65 -0.3 1,517,242 - Xcc-8004.1579.1 0.65 +0.3 1,517,242 - Xcc-8004.1579.1 0.65 -0.5 1,517,242 - Xcc-8004.1579.1 0.65 +1.8 1,517,242 - Xcc-8004.1579.1 0.65 +0.9 1,517,294 + Xcc-8004.1579.1 0.71 -0.0 1,517,311 + Xcc-8004.1579.1 0.73 +0.1 1,517,377 + Xcc-8004.1579.1 0.80 -1.1 1,517,448 + Xcc-8004.1579.1 0.88 -0.8 1,517,448 + Xcc-8004.1579.1 0.88 +1.0 1,517,448 + Xcc-8004.1579.1 0.88 -0.7 1,517,544 - -1.8 1,517,544 - -0.7 1,517,565 + -1.3 1,517,566 - -2.2 1,517,566 - +1.2 1,517,572 - +0.9 1,517,597 + -1.0 1,517,598 - -0.4 1,517,598 - +1.6 1,517,662 + -1.0 1,517,663 - +0.8 1,517,663 - +0.5 1,517,663 - -3.2 1,517,663 - -0.1 1,517,663 - +0.8 1,517,663 - +0.7 1,517,682 + -0.0 1,517,688 + -1.4 1,517,688 + -1.6 1,517,688 + -3.1 1,518,340 - -0.2 1,518,349 + -1.7 1,518,349 + +0.5 1,518,349 + +1.0 1,518,350 - -0.0 1,518,350 - -0.7 1,518,350 - +0.6 1,518,355 + +0.6 1,518,355 + +0.7 1,518,356 - -0.5 1,518,356 - -0.6 1,518,401 + +1.9 1,518,401 + +1.9 1,518,401 + +1.1 1,518,401 + +1.4 1,518,402 - -1.4 1,518,402 - -0.2 1,518,402 - +1.6 1,518,419 + +0.4 1,518,419 + -1.3 1,518,420 - +0.6 1,518,428 + -0.6 1,518,428 + -0.8 1,518,428 + -1.0 1,518,428 + +1.0 1,518,428 + +0.2 1,518,428 + -2.2 1,518,428 + -0.6 1,518,428 + -0.0 1,518,428 + -0.0 1,518,428 + -2.3 1,518,428 + -0.5 1,518,428 + -1.5 1,518,428 + -0.0 1,518,428 + -0.6 1,518,428 + -1.7 1,518,428 + -0.5 1,518,428 + +1.2 1,518,428 + -2.5 1,518,428 + -0.0 1,518,428 + +1.6 1,518,428 + -0.6 1,518,428 + -0.3 1,518,428 + +0.1 1,518,429 - -0.0 1,518,429 - -0.2 1,518,429 - +0.1 1,518,429 - -0.1 1,518,429 - +0.6 1,518,429 - +0.1 1,518,429 - -2.8 1,518,429 - -2.5 1,518,429 - -1.6 1,518,429 - -0.1 1,518,429 - +0.8 1,518,429 - -2.6 1,518,429 - -0.2 1,518,429 - -2.4 1,518,434 + -0.4 1,518,435 - +0.8 1,518,452 + +1.3 1,518,453 - -1.3 1,518,453 - -0.2 1,518,453 - -2.3 1,518,453 - -1.0 1,518,485 + -0.1 1,518,485 + -1.1 1,518,485 + -0.4 1,518,486 - +0.7 1,518,486 - +0.7 1,518,557 + +1.2 1,518,578 + -0.3 1,518,578 + -2.2 1,518,578 + +1.9 1,518,579 - -2.2 1,518,579 - -1.7 1,518,579 - -0.4 1,518,647 + -0.2 1,518,647 + -1.3 1,518,647 + +0.9 1,518,647 + -0.7 1,518,647 + -0.5 1,518,647 + -2.3 1,518,648 - -0.8 1,518,648 - -0.0 1,518,648 - +1.1 1,518,648 - +0.2 1,518,648 - -0.4 1,518,699 + Xcc-8004.1581.1 0.11 +0.3 1,518,699 + Xcc-8004.1581.1 0.11 -0.3 1,518,699 + Xcc-8004.1581.1 0.11 -2.9 1,518,699 + Xcc-8004.1581.1 0.11 -0.7 1,518,699 + Xcc-8004.1581.1 0.11 -2.9 1,518,699 + Xcc-8004.1581.1 0.11 -0.4 1,518,700 - Xcc-8004.1581.1 0.11 -0.1 1,518,700 - Xcc-8004.1581.1 0.11 -2.3 1,518,700 - Xcc-8004.1581.1 0.11 -1.6 1,518,700 - Xcc-8004.1581.1 0.11 -0.2 1,518,701 + Xcc-8004.1581.1 0.11 -1.9 1,518,701 + Xcc-8004.1581.1 0.11 -2.4 1,518,702 - Xcc-8004.1581.1 0.11 -4.0 1,518,702 - Xcc-8004.1581.1 0.11 -2.4 1,518,749 + Xcc-8004.1581.1 0.12 +0.0 1,518,749 + Xcc-8004.1581.1 0.12 +1.9 1,518,749 + Xcc-8004.1581.1 0.12 +0.2 1,518,749 + Xcc-8004.1581.1 0.12 -0.8 1,518,749 + Xcc-8004.1581.1 0.12 -0.8 1,518,749 + Xcc-8004.1581.1 0.12 +0.9 1,518,750 - Xcc-8004.1581.1 0.13 -0.5 1,518,750 - Xcc-8004.1581.1 0.13 -1.6 1,518,750 - Xcc-8004.1581.1 0.13 -0.3 1,518,750 - Xcc-8004.1581.1 0.13 +0.6 1,518,750 - Xcc-8004.1581.1 0.13 +0.4 1,518,750 - Xcc-8004.1581.1 0.13 -0.9 1,518,750 - Xcc-8004.1581.1 0.13 +0.8 1,518,791 + Xcc-8004.1581.1 0.14 -0.4 1,518,791 + Xcc-8004.1581.1 0.14 -0.8 1,518,854 + Xcc-8004.1581.1 0.16 -0.2 1,518,854 + Xcc-8004.1581.1 0.16 -0.6 1,518,854 + Xcc-8004.1581.1 0.16 -2.6 1,518,854 + Xcc-8004.1581.1 0.16 +1.4 1,518,855 - Xcc-8004.1581.1 0.16 -0.6 1,518,855 - Xcc-8004.1581.1 0.16 -0.1 1,518,855 - Xcc-8004.1581.1 0.16 -1.4 1,518,855 - Xcc-8004.1581.1 0.16 -0.7 1,518,855 - Xcc-8004.1581.1 0.16 -0.4 1,518,855 - Xcc-8004.1581.1 0.16 -1.0 1,518,855 - Xcc-8004.1581.1 0.16 -0.4 1,518,855 - Xcc-8004.1581.1 0.16 -0.8 1,518,855 - Xcc-8004.1581.1 0.16 -0.0 1,518,908 + Xcc-8004.1581.1 0.18 +0.4 1,518,908 + Xcc-8004.1581.1 0.18 -3.0 1,518,909 - Xcc-8004.1581.1 0.18 -3.2 1,518,909 - Xcc-8004.1581.1 0.18 -1.6 1,518,941 + Xcc-8004.1581.1 0.19 -0.7 1,518,941 + Xcc-8004.1581.1 0.19 -0.7 1,518,941 + Xcc-8004.1581.1 0.19 +1.4 1,518,941 + Xcc-8004.1581.1 0.19 -2.5 1,518,941 + Xcc-8004.1581.1 0.19 +0.8 1,518,941 + Xcc-8004.1581.1 0.19 +0.1 1,518,941 + Xcc-8004.1581.1 0.19 -0.5 1,518,941 + Xcc-8004.1581.1 0.19 -1.6 1,518,942 - Xcc-8004.1581.1 0.19 +0.1 1,518,942 - Xcc-8004.1581.1 0.19 -0.3 1,518,942 - Xcc-8004.1581.1 0.19 -3.0 1,518,942 - Xcc-8004.1581.1 0.19 +2.3 1,518,942 - Xcc-8004.1581.1 0.19 -1.5 1,518,942 - Xcc-8004.1581.1 0.19 +0.0 1,518,942 - Xcc-8004.1581.1 0.19 -0.8 1,518,942 - Xcc-8004.1581.1 0.19 -0.9 1,518,942 - Xcc-8004.1581.1 0.19 +0.8 1,518,979 - Xcc-8004.1581.1 0.21 -1.3 1,518,986 + Xcc-8004.1581.1 0.21 +0.5 1,518,986 + Xcc-8004.1581.1 0.21 -1.3 1,518,986 + Xcc-8004.1581.1 0.21 +1.0 1,518,987 - Xcc-8004.1581.1 0.21 -2.7 1,518,987 - Xcc-8004.1581.1 0.21 -3.3 1,518,987 - Xcc-8004.1581.1 0.21 -2.2 1,519,001 + Xcc-8004.1581.1 0.22 -0.9 1,519,002 - Xcc-8004.1581.1 0.22 -0.8 1,519,002 - Xcc-8004.1581.1 0.22 +0.8 1,519,018 + Xcc-8004.1581.1 0.22 -1.7 1,519,018 + Xcc-8004.1581.1 0.22 +1.0 1,519,019 - Xcc-8004.1581.1 0.22 +0.5 1,519,032 - Xcc-8004.1581.1 0.23 +0.7 1,519,185 + Xcc-8004.1581.1 0.28 -3.2
Or see this region's nucleotide sequence