Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1415.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1413.1 and Xcc-8004.1414.1 are separated by 275 nucleotidesXcc-8004.1414.1 and Xcc-8004.1415.1 are separated by 186 nucleotidesXcc-8004.1415.1 and Xcc-8004.1416.1 are separated by 130 nucleotides Xcc-8004.1413.1: Xcc-8004.1413.1 - Outer membrane receptor proteins, mostly Fe transport, at 1,346,941 to 1,349,328 Xcc-8004.1413.1 Xcc-8004.1414.1: Xcc-8004.1414.1 - Lactoylglutathione lyase and related lyases, at 1,349,604 to 1,350,029 Xcc-8004.1414.1 Xcc-8004.1415.1: Xcc-8004.1415.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 1,350,216 to 1,352,597 Xcc-8004.1415.1 Xcc-8004.1416.1: Xcc-8004.1416.1 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 1,352,728 to 1,354,692 Xcc-8004.1416.1 Position (kb) 1350 1351 1352 1353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1349.467 kb on + strandat 1349.467 kb on + strandat 1349.467 kb on + strandat 1349.468 kb on - strandat 1349.468 kb on - strandat 1349.488 kb on + strandat 1349.582 kb on + strandat 1349.582 kb on + strandat 1349.583 kb on - strandat 1349.589 kb on + strandat 1349.589 kb on + strandat 1349.590 kb on - strandat 1349.609 kb on - strandat 1349.705 kb on - strand, within Xcc-8004.1414.1at 1350.062 kb on + strandat 1350.062 kb on + strandat 1350.062 kb on + strandat 1350.063 kb on - strandat 1350.063 kb on - strandat 1350.169 kb on + strandat 1350.170 kb on - strandat 1350.205 kb on + strandat 1350.206 kb on - strandat 1350.218 kb on - strandat 1350.227 kb on - strandat 1350.227 kb on - strandat 1350.248 kb on - strandat 1350.248 kb on - strandat 1350.248 kb on - strandat 1350.385 kb on + strandat 1350.386 kb on - strandat 1350.460 kb on + strand, within Xcc-8004.1415.1at 1350.460 kb on + strand, within Xcc-8004.1415.1at 1350.460 kb on + strand, within Xcc-8004.1415.1at 1350.460 kb on + strand, within Xcc-8004.1415.1at 1350.461 kb on - strand, within Xcc-8004.1415.1at 1350.461 kb on - strand, within Xcc-8004.1415.1at 1350.581 kb on + strand, within Xcc-8004.1415.1at 1350.655 kb on + strand, within Xcc-8004.1415.1at 1350.655 kb on + strand, within Xcc-8004.1415.1at 1350.655 kb on + strand, within Xcc-8004.1415.1at 1350.655 kb on + strand, within Xcc-8004.1415.1at 1350.656 kb on - strand, within Xcc-8004.1415.1at 1350.656 kb on - strand, within Xcc-8004.1415.1at 1350.662 kb on - strand, within Xcc-8004.1415.1at 1350.707 kb on - strand, within Xcc-8004.1415.1at 1350.868 kb on + strand, within Xcc-8004.1415.1at 1350.886 kb on + strand, within Xcc-8004.1415.1at 1350.886 kb on + strand, within Xcc-8004.1415.1at 1350.886 kb on + strand, within Xcc-8004.1415.1at 1350.886 kb on + strand, within Xcc-8004.1415.1at 1350.887 kb on - strand, within Xcc-8004.1415.1at 1350.887 kb on - strand, within Xcc-8004.1415.1at 1350.887 kb on - strand, within Xcc-8004.1415.1at 1350.887 kb on - strand, within Xcc-8004.1415.1at 1350.909 kb on + strand, within Xcc-8004.1415.1at 1350.910 kb on - strand, within Xcc-8004.1415.1at 1350.925 kb on + strand, within Xcc-8004.1415.1at 1350.999 kb on - strand, within Xcc-8004.1415.1at 1350.999 kb on - strand, within Xcc-8004.1415.1at 1351.057 kb on + strand, within Xcc-8004.1415.1at 1351.101 kb on - strand, within Xcc-8004.1415.1at 1351.132 kb on + strand, within Xcc-8004.1415.1at 1351.132 kb on + strand, within Xcc-8004.1415.1at 1351.177 kb on + strand, within Xcc-8004.1415.1at 1351.243 kb on + strand, within Xcc-8004.1415.1at 1351.244 kb on - strand, within Xcc-8004.1415.1at 1351.244 kb on - strand, within Xcc-8004.1415.1at 1351.252 kb on + strand, within Xcc-8004.1415.1at 1351.252 kb on + strand, within Xcc-8004.1415.1at 1351.253 kb on - strand, within Xcc-8004.1415.1at 1351.339 kb on + strand, within Xcc-8004.1415.1at 1351.561 kb on + strand, within Xcc-8004.1415.1at 1351.562 kb on - strand, within Xcc-8004.1415.1at 1351.567 kb on + strand, within Xcc-8004.1415.1at 1351.567 kb on + strand, within Xcc-8004.1415.1at 1351.567 kb on + strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.568 kb on - strand, within Xcc-8004.1415.1at 1351.573 kb on + strand, within Xcc-8004.1415.1at 1351.573 kb on + strand, within Xcc-8004.1415.1at 1351.574 kb on - strand, within Xcc-8004.1415.1at 1351.646 kb on - strand, within Xcc-8004.1415.1at 1351.646 kb on - strand, within Xcc-8004.1415.1at 1351.679 kb on - strand, within Xcc-8004.1415.1at 1351.720 kb on + strand, within Xcc-8004.1415.1at 1351.720 kb on + strand, within Xcc-8004.1415.1at 1351.898 kb on - strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.027 kb on - strand, within Xcc-8004.1415.1at 1352.113 kb on + strand, within Xcc-8004.1415.1at 1352.114 kb on - strand, within Xcc-8004.1415.1at 1352.638 kb on + strandat 1352.638 kb on + strandat 1352.639 kb on - strandat 1352.694 kb on - strandat 1352.694 kb on - strandat 1352.697 kb on + strandat 1352.697 kb on + strandat 1352.698 kb on - strandat 1352.711 kb on - strandat 1352.711 kb on - strandat 1352.760 kb on - strandat 1352.760 kb on - strandat 1352.857 kb on + strandat 1353.143 kb on - strand, within Xcc-8004.1416.1at 1353.454 kb on + strand, within Xcc-8004.1416.1at 1353.454 kb on + strand, within Xcc-8004.1416.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,349,467 + -2.6
1,349,467 + -1.4
1,349,467 + +0.7
1,349,468 - -2.1
1,349,468 - -0.1
1,349,488 + -1.7
1,349,582 + -2.5
1,349,582 + -1.0
1,349,583 - -0.8
1,349,589 + -1.6
1,349,589 + -1.7
1,349,590 - -1.5
1,349,609 - +0.3
1,349,705 - Xcc-8004.1414.1 0.24 -0.2
1,350,062 + +1.1
1,350,062 + +2.2
1,350,062 + -0.5
1,350,063 - -3.4
1,350,063 - -0.4
1,350,169 + +1.7
1,350,170 - -1.4
1,350,205 + -2.3
1,350,206 - -0.1
1,350,218 - -0.2
1,350,227 - +0.1
1,350,227 - +0.8
1,350,248 - -0.1
1,350,248 - +0.7
1,350,248 - -0.6
1,350,385 + +1.6
1,350,386 - -0.4
1,350,460 + Xcc-8004.1415.1 0.10 -1.6
1,350,460 + Xcc-8004.1415.1 0.10 +0.2
1,350,460 + Xcc-8004.1415.1 0.10 -1.6
1,350,460 + Xcc-8004.1415.1 0.10 +0.1
1,350,461 - Xcc-8004.1415.1 0.10 +0.6
1,350,461 - Xcc-8004.1415.1 0.10 -0.6
1,350,581 + Xcc-8004.1415.1 0.15 -0.2
1,350,655 + Xcc-8004.1415.1 0.18 +0.0
1,350,655 + Xcc-8004.1415.1 0.18 +1.0
1,350,655 + Xcc-8004.1415.1 0.18 -1.7
1,350,655 + Xcc-8004.1415.1 0.18 -1.7
1,350,656 - Xcc-8004.1415.1 0.18 +2.2
1,350,656 - Xcc-8004.1415.1 0.18 -0.2
1,350,662 - Xcc-8004.1415.1 0.19 -3.5
1,350,707 - Xcc-8004.1415.1 0.21 -2.7
1,350,868 + Xcc-8004.1415.1 0.27 -1.2
1,350,886 + Xcc-8004.1415.1 0.28 +0.1
1,350,886 + Xcc-8004.1415.1 0.28 -1.5
1,350,886 + Xcc-8004.1415.1 0.28 +0.6
1,350,886 + Xcc-8004.1415.1 0.28 +0.4
1,350,887 - Xcc-8004.1415.1 0.28 -0.7
1,350,887 - Xcc-8004.1415.1 0.28 +1.2
1,350,887 - Xcc-8004.1415.1 0.28 -0.1
1,350,887 - Xcc-8004.1415.1 0.28 -0.2
1,350,909 + Xcc-8004.1415.1 0.29 +0.5
1,350,910 - Xcc-8004.1415.1 0.29 -1.1
1,350,925 + Xcc-8004.1415.1 0.30 +1.5
1,350,999 - Xcc-8004.1415.1 0.33 +0.3
1,350,999 - Xcc-8004.1415.1 0.33 -1.9
1,351,057 + Xcc-8004.1415.1 0.35 -0.2
1,351,101 - Xcc-8004.1415.1 0.37 +2.9
1,351,132 + Xcc-8004.1415.1 0.38 +0.4
1,351,132 + Xcc-8004.1415.1 0.38 -0.5
1,351,177 + Xcc-8004.1415.1 0.40 -1.7
1,351,243 + Xcc-8004.1415.1 0.43 -0.8
1,351,244 - Xcc-8004.1415.1 0.43 -2.9
1,351,244 - Xcc-8004.1415.1 0.43 -0.1
1,351,252 + Xcc-8004.1415.1 0.43 -0.2
1,351,252 + Xcc-8004.1415.1 0.43 +0.2
1,351,253 - Xcc-8004.1415.1 0.44 -0.5
1,351,339 + Xcc-8004.1415.1 0.47 +0.8
1,351,561 + Xcc-8004.1415.1 0.56 -3.8
1,351,562 - Xcc-8004.1415.1 0.57 -1.1
1,351,567 + Xcc-8004.1415.1 0.57 +0.6
1,351,567 + Xcc-8004.1415.1 0.57 +0.7
1,351,567 + Xcc-8004.1415.1 0.57 +0.4
1,351,568 - Xcc-8004.1415.1 0.57 -0.2
1,351,568 - Xcc-8004.1415.1 0.57 -0.2
1,351,568 - Xcc-8004.1415.1 0.57 +0.2
1,351,568 - Xcc-8004.1415.1 0.57 -0.3
1,351,568 - Xcc-8004.1415.1 0.57 -0.3
1,351,568 - Xcc-8004.1415.1 0.57 -1.9
1,351,568 - Xcc-8004.1415.1 0.57 +0.3
1,351,573 + Xcc-8004.1415.1 0.57 -0.3
1,351,573 + Xcc-8004.1415.1 0.57 +0.6
1,351,574 - Xcc-8004.1415.1 0.57 +0.7
1,351,646 - Xcc-8004.1415.1 0.60 -1.9
1,351,646 - Xcc-8004.1415.1 0.60 -2.9
1,351,679 - Xcc-8004.1415.1 0.61 +0.8
1,351,720 + Xcc-8004.1415.1 0.63 -1.5
1,351,720 + Xcc-8004.1415.1 0.63 +0.2
1,351,898 - Xcc-8004.1415.1 0.71 +0.5
1,352,002 + Xcc-8004.1415.1 0.75 -0.7
1,352,002 + Xcc-8004.1415.1 0.75 -1.9
1,352,002 + Xcc-8004.1415.1 0.75 -0.2
1,352,002 + Xcc-8004.1415.1 0.75 +0.8
1,352,002 + Xcc-8004.1415.1 0.75 +0.3
1,352,002 + Xcc-8004.1415.1 0.75 -0.1
1,352,002 + Xcc-8004.1415.1 0.75 -0.7
1,352,003 - Xcc-8004.1415.1 0.75 -0.1
1,352,003 - Xcc-8004.1415.1 0.75 -0.1
1,352,003 - Xcc-8004.1415.1 0.75 -1.3
1,352,003 - Xcc-8004.1415.1 0.75 +1.2
1,352,003 - Xcc-8004.1415.1 0.75 +0.1
1,352,027 - Xcc-8004.1415.1 0.76 -0.1
1,352,113 + Xcc-8004.1415.1 0.80 +0.6
1,352,114 - Xcc-8004.1415.1 0.80 -1.2
1,352,638 + +0.4
1,352,638 + +1.0
1,352,639 - +0.2
1,352,694 - -2.7
1,352,694 - -2.3
1,352,697 + +0.7
1,352,697 + -2.4
1,352,698 - +1.3
1,352,711 - -1.1
1,352,711 - +1.1
1,352,760 - -0.9
1,352,760 - +0.6
1,352,857 + +0.6
1,353,143 - Xcc-8004.1416.1 0.21 +0.3
1,353,454 + Xcc-8004.1416.1 0.37 +0.2
1,353,454 + Xcc-8004.1416.1 0.37 +1.6

Or see this region's nucleotide sequence