Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1331.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1329.1 and Xcc-8004.1330.1 are separated by 224 nucleotidesXcc-8004.1330.1 and Xcc-8004.1331.1 are separated by 38 nucleotidesXcc-8004.1331.1 and Xcc-8004.1332.1 are separated by 264 nucleotides Xcc-8004.1329.1: Xcc-8004.1329.1 - Virulence regulator, at 1,260,434 to 1,260,826 Xcc-8004.1329.1 Xcc-8004.1330.1: Xcc-8004.1330.1 - hypothetical protein, at 1,261,051 to 1,261,326 Xcc-8004.1330.1 Xcc-8004.1331.1: Xcc-8004.1331.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 1,261,365 to 1,263,692 Xcc-8004.1331.1 Xcc-8004.1332.1: Xcc-8004.1332.1 - Ribosomal protein S6 glutaminyl transferase, at 1,263,957 to 1,264,862 Xcc-8004.1332.1 Position (kb) 1261 1262 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1260.399 kb on + strandat 1260.399 kb on + strandat 1260.530 kb on + strand, within Xcc-8004.1329.1at 1260.530 kb on + strand, within Xcc-8004.1329.1at 1260.686 kb on + strand, within Xcc-8004.1329.1at 1260.686 kb on + strand, within Xcc-8004.1329.1at 1260.686 kb on + strand, within Xcc-8004.1329.1at 1260.686 kb on + strand, within Xcc-8004.1329.1at 1260.770 kb on + strand, within Xcc-8004.1329.1at 1260.771 kb on - strand, within Xcc-8004.1329.1at 1260.771 kb on - strand, within Xcc-8004.1329.1at 1260.773 kb on - strand, within Xcc-8004.1329.1at 1260.816 kb on - strandat 1260.816 kb on - strandat 1260.842 kb on + strandat 1260.861 kb on + strandat 1260.861 kb on + strandat 1260.862 kb on - strandat 1260.862 kb on - strandat 1260.862 kb on - strandat 1260.862 kb on - strandat 1260.977 kb on + strandat 1260.977 kb on + strandat 1260.978 kb on - strandat 1260.978 kb on - strandat 1260.978 kb on - strandat 1261.040 kb on - strandat 1261.077 kb on + strandat 1261.130 kb on + strand, within Xcc-8004.1330.1at 1261.130 kb on + strand, within Xcc-8004.1330.1at 1261.130 kb on + strand, within Xcc-8004.1330.1at 1261.146 kb on + strand, within Xcc-8004.1330.1at 1261.146 kb on + strand, within Xcc-8004.1330.1at 1261.147 kb on - strand, within Xcc-8004.1330.1at 1261.222 kb on - strand, within Xcc-8004.1330.1at 1261.238 kb on - strand, within Xcc-8004.1330.1at 1261.291 kb on + strand, within Xcc-8004.1330.1at 1261.291 kb on + strand, within Xcc-8004.1330.1at 1261.291 kb on + strand, within Xcc-8004.1330.1at 1261.292 kb on - strand, within Xcc-8004.1330.1at 1261.292 kb on - strand, within Xcc-8004.1330.1at 1261.292 kb on - strand, within Xcc-8004.1330.1at 1261.292 kb on - strand, within Xcc-8004.1330.1at 1261.301 kb on + strandat 1261.463 kb on + strandat 1261.618 kb on - strand, within Xcc-8004.1331.1at 1261.714 kb on + strand, within Xcc-8004.1331.1at 1261.714 kb on + strand, within Xcc-8004.1331.1at 1261.714 kb on + strand, within Xcc-8004.1331.1at 1261.760 kb on + strand, within Xcc-8004.1331.1at 1261.855 kb on + strand, within Xcc-8004.1331.1at 1261.855 kb on + strand, within Xcc-8004.1331.1at 1261.856 kb on - strand, within Xcc-8004.1331.1at 1262.011 kb on + strand, within Xcc-8004.1331.1at 1262.011 kb on + strand, within Xcc-8004.1331.1at 1262.011 kb on + strand, within Xcc-8004.1331.1at 1262.012 kb on - strand, within Xcc-8004.1331.1at 1262.084 kb on - strand, within Xcc-8004.1331.1at 1262.084 kb on - strand, within Xcc-8004.1331.1at 1262.105 kb on + strand, within Xcc-8004.1331.1at 1262.106 kb on - strand, within Xcc-8004.1331.1at 1262.531 kb on + strand, within Xcc-8004.1331.1at 1262.532 kb on - strand, within Xcc-8004.1331.1at 1262.557 kb on + strand, within Xcc-8004.1331.1at 1262.557 kb on + strand, within Xcc-8004.1331.1at 1262.558 kb on - strand, within Xcc-8004.1331.1at 1262.558 kb on - strand, within Xcc-8004.1331.1at 1262.558 kb on - strand, within Xcc-8004.1331.1at 1262.558 kb on - strand, within Xcc-8004.1331.1at 1262.558 kb on - strand, within Xcc-8004.1331.1at 1262.560 kb on + strand, within Xcc-8004.1331.1at 1262.561 kb on - strand, within Xcc-8004.1331.1at 1262.561 kb on - strand, within Xcc-8004.1331.1at 1262.584 kb on + strand, within Xcc-8004.1331.1at 1262.584 kb on + strand, within Xcc-8004.1331.1at 1262.585 kb on - strand, within Xcc-8004.1331.1at 1262.587 kb on + strand, within Xcc-8004.1331.1at 1262.588 kb on - strand, within Xcc-8004.1331.1at 1262.588 kb on - strand, within Xcc-8004.1331.1at 1262.588 kb on - strand, within Xcc-8004.1331.1at 1262.657 kb on - strand, within Xcc-8004.1331.1at 1262.779 kb on + strand, within Xcc-8004.1331.1at 1262.780 kb on - strand, within Xcc-8004.1331.1at 1262.788 kb on + strand, within Xcc-8004.1331.1at 1262.788 kb on + strand, within Xcc-8004.1331.1at 1262.788 kb on + strand, within Xcc-8004.1331.1at 1262.789 kb on - strand, within Xcc-8004.1331.1at 1262.861 kb on + strand, within Xcc-8004.1331.1at 1262.882 kb on - strand, within Xcc-8004.1331.1at 1262.882 kb on - strand, within Xcc-8004.1331.1at 1262.959 kb on + strand, within Xcc-8004.1331.1at 1262.960 kb on - strand, within Xcc-8004.1331.1at 1262.967 kb on + strand, within Xcc-8004.1331.1at 1262.967 kb on + strand, within Xcc-8004.1331.1at 1262.968 kb on - strand, within Xcc-8004.1331.1at 1262.968 kb on - strand, within Xcc-8004.1331.1at 1262.981 kb on - strand, within Xcc-8004.1331.1at 1262.981 kb on - strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.034 kb on + strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.035 kb on - strand, within Xcc-8004.1331.1at 1263.124 kb on + strand, within Xcc-8004.1331.1at 1263.124 kb on + strand, within Xcc-8004.1331.1at 1263.125 kb on - strand, within Xcc-8004.1331.1at 1263.125 kb on - strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.130 kb on + strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.131 kb on - strand, within Xcc-8004.1331.1at 1263.175 kb on + strand, within Xcc-8004.1331.1at 1263.229 kb on + strand, within Xcc-8004.1331.1at 1263.229 kb on + strand, within Xcc-8004.1331.1at 1263.230 kb on - strand, within Xcc-8004.1331.1at 1263.230 kb on - strand, within Xcc-8004.1331.1at 1263.271 kb on - strand, within Xcc-8004.1331.1at 1263.283 kb on + strand, within Xcc-8004.1331.1at 1263.283 kb on + strand, within Xcc-8004.1331.1at 1263.284 kb on - strand, within Xcc-8004.1331.1at 1263.284 kb on - strand, within Xcc-8004.1331.1at 1263.307 kb on + strand, within Xcc-8004.1331.1at 1263.308 kb on - strand, within Xcc-8004.1331.1at 1263.308 kb on - strand, within Xcc-8004.1331.1at 1263.469 kb on + strandat 1263.767 kb on - strandat 1263.767 kb on - strandat 1264.023 kb on + strandat 1264.024 kb on - strandat 1264.098 kb on + strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.099 kb on - strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.134 kb on + strand, within Xcc-8004.1332.1at 1264.135 kb on - strand, within Xcc-8004.1332.1at 1264.206 kb on - strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.242 kb on + strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.243 kb on - strand, within Xcc-8004.1332.1at 1264.244 kb on + strand, within Xcc-8004.1332.1at 1264.245 kb on - strand, within Xcc-8004.1332.1at 1264.320 kb on - strand, within Xcc-8004.1332.1at 1264.326 kb on - strand, within Xcc-8004.1332.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,260,399 + +0.6
1,260,399 + +0.3
1,260,530 + Xcc-8004.1329.1 0.24 +0.3
1,260,530 + Xcc-8004.1329.1 0.24 +0.3
1,260,686 + Xcc-8004.1329.1 0.64 -1.7
1,260,686 + Xcc-8004.1329.1 0.64 -0.8
1,260,686 + Xcc-8004.1329.1 0.64 -1.2
1,260,686 + Xcc-8004.1329.1 0.64 -1.1
1,260,770 + Xcc-8004.1329.1 0.85 +0.8
1,260,771 - Xcc-8004.1329.1 0.86 +0.2
1,260,771 - Xcc-8004.1329.1 0.86 +0.9
1,260,773 - Xcc-8004.1329.1 0.86 -0.7
1,260,816 - +1.4
1,260,816 - -1.2
1,260,842 + -0.9
1,260,861 + +0.9
1,260,861 + -0.4
1,260,862 - +2.0
1,260,862 - -0.3
1,260,862 - -1.4
1,260,862 - +0.4
1,260,977 + +0.0
1,260,977 + +1.9
1,260,978 - -1.2
1,260,978 - +0.2
1,260,978 - +0.6
1,261,040 - +1.9
1,261,077 + +0.7
1,261,130 + Xcc-8004.1330.1 0.29 +0.3
1,261,130 + Xcc-8004.1330.1 0.29 +0.1
1,261,130 + Xcc-8004.1330.1 0.29 +1.7
1,261,146 + Xcc-8004.1330.1 0.34 -0.7
1,261,146 + Xcc-8004.1330.1 0.34 +1.9
1,261,147 - Xcc-8004.1330.1 0.35 -1.2
1,261,222 - Xcc-8004.1330.1 0.62 +0.9
1,261,238 - Xcc-8004.1330.1 0.68 -0.8
1,261,291 + Xcc-8004.1330.1 0.87 +1.9
1,261,291 + Xcc-8004.1330.1 0.87 +1.1
1,261,291 + Xcc-8004.1330.1 0.87 +2.3
1,261,292 - Xcc-8004.1330.1 0.87 -0.1
1,261,292 - Xcc-8004.1330.1 0.87 -0.1
1,261,292 - Xcc-8004.1330.1 0.87 -3.0
1,261,292 - Xcc-8004.1330.1 0.87 +0.6
1,261,301 + -1.3
1,261,463 + -0.1
1,261,618 - Xcc-8004.1331.1 0.11 -0.6
1,261,714 + Xcc-8004.1331.1 0.15 -1.3
1,261,714 + Xcc-8004.1331.1 0.15 +0.4
1,261,714 + Xcc-8004.1331.1 0.15 +0.2
1,261,760 + Xcc-8004.1331.1 0.17 -1.9
1,261,855 + Xcc-8004.1331.1 0.21 +0.5
1,261,855 + Xcc-8004.1331.1 0.21 +0.6
1,261,856 - Xcc-8004.1331.1 0.21 +0.2
1,262,011 + Xcc-8004.1331.1 0.28 -2.3
1,262,011 + Xcc-8004.1331.1 0.28 -0.0
1,262,011 + Xcc-8004.1331.1 0.28 -0.6
1,262,012 - Xcc-8004.1331.1 0.28 +0.6
1,262,084 - Xcc-8004.1331.1 0.31 -1.0
1,262,084 - Xcc-8004.1331.1 0.31 -2.0
1,262,105 + Xcc-8004.1331.1 0.32 -0.5
1,262,106 - Xcc-8004.1331.1 0.32 +1.2
1,262,531 + Xcc-8004.1331.1 0.50 +0.6
1,262,532 - Xcc-8004.1331.1 0.50 -0.2
1,262,557 + Xcc-8004.1331.1 0.51 +0.1
1,262,557 + Xcc-8004.1331.1 0.51 +0.8
1,262,558 - Xcc-8004.1331.1 0.51 +2.1
1,262,558 - Xcc-8004.1331.1 0.51 -1.1
1,262,558 - Xcc-8004.1331.1 0.51 -0.4
1,262,558 - Xcc-8004.1331.1 0.51 -1.9
1,262,558 - Xcc-8004.1331.1 0.51 -1.8
1,262,560 + Xcc-8004.1331.1 0.51 +1.8
1,262,561 - Xcc-8004.1331.1 0.51 -1.9
1,262,561 - Xcc-8004.1331.1 0.51 +0.1
1,262,584 + Xcc-8004.1331.1 0.52 -0.6
1,262,584 + Xcc-8004.1331.1 0.52 -1.6
1,262,585 - Xcc-8004.1331.1 0.52 -3.0
1,262,587 + Xcc-8004.1331.1 0.52 +0.9
1,262,588 - Xcc-8004.1331.1 0.53 -1.7
1,262,588 - Xcc-8004.1331.1 0.53 -0.7
1,262,588 - Xcc-8004.1331.1 0.53 +1.4
1,262,657 - Xcc-8004.1331.1 0.55 -0.3
1,262,779 + Xcc-8004.1331.1 0.61 -0.9
1,262,780 - Xcc-8004.1331.1 0.61 -0.6
1,262,788 + Xcc-8004.1331.1 0.61 -0.2
1,262,788 + Xcc-8004.1331.1 0.61 +1.1
1,262,788 + Xcc-8004.1331.1 0.61 -0.1
1,262,789 - Xcc-8004.1331.1 0.61 -0.7
1,262,861 + Xcc-8004.1331.1 0.64 -0.7
1,262,882 - Xcc-8004.1331.1 0.65 -2.5
1,262,882 - Xcc-8004.1331.1 0.65 -0.9
1,262,959 + Xcc-8004.1331.1 0.68 -2.9
1,262,960 - Xcc-8004.1331.1 0.69 +0.1
1,262,967 + Xcc-8004.1331.1 0.69 +1.0
1,262,967 + Xcc-8004.1331.1 0.69 +0.0
1,262,968 - Xcc-8004.1331.1 0.69 +0.0
1,262,968 - Xcc-8004.1331.1 0.69 -0.1
1,262,981 - Xcc-8004.1331.1 0.69 +1.1
1,262,981 - Xcc-8004.1331.1 0.69 +0.4
1,263,034 + Xcc-8004.1331.1 0.72 +0.8
1,263,034 + Xcc-8004.1331.1 0.72 -2.3
1,263,034 + Xcc-8004.1331.1 0.72 -0.1
1,263,034 + Xcc-8004.1331.1 0.72 -0.6
1,263,034 + Xcc-8004.1331.1 0.72 +0.4
1,263,034 + Xcc-8004.1331.1 0.72 -0.3
1,263,034 + Xcc-8004.1331.1 0.72 -1.1
1,263,034 + Xcc-8004.1331.1 0.72 +0.8
1,263,035 - Xcc-8004.1331.1 0.72 +1.2
1,263,035 - Xcc-8004.1331.1 0.72 -0.6
1,263,035 - Xcc-8004.1331.1 0.72 -1.1
1,263,035 - Xcc-8004.1331.1 0.72 -0.5
1,263,035 - Xcc-8004.1331.1 0.72 +2.3
1,263,124 + Xcc-8004.1331.1 0.76 -0.5
1,263,124 + Xcc-8004.1331.1 0.76 -0.7
1,263,125 - Xcc-8004.1331.1 0.76 -1.0
1,263,125 - Xcc-8004.1331.1 0.76 +0.4
1,263,130 + Xcc-8004.1331.1 0.76 +0.5
1,263,130 + Xcc-8004.1331.1 0.76 -3.0
1,263,130 + Xcc-8004.1331.1 0.76 +1.0
1,263,130 + Xcc-8004.1331.1 0.76 +0.3
1,263,131 - Xcc-8004.1331.1 0.76 +2.6
1,263,131 - Xcc-8004.1331.1 0.76 +0.1
1,263,131 - Xcc-8004.1331.1 0.76 +0.0
1,263,131 - Xcc-8004.1331.1 0.76 -2.5
1,263,175 + Xcc-8004.1331.1 0.78 +3.4
1,263,229 + Xcc-8004.1331.1 0.80 -0.6
1,263,229 + Xcc-8004.1331.1 0.80 +0.1
1,263,230 - Xcc-8004.1331.1 0.80 -0.6
1,263,230 - Xcc-8004.1331.1 0.80 +1.3
1,263,271 - Xcc-8004.1331.1 0.82 +1.9
1,263,283 + Xcc-8004.1331.1 0.82 +0.2
1,263,283 + Xcc-8004.1331.1 0.82 +0.0
1,263,284 - Xcc-8004.1331.1 0.82 +0.7
1,263,284 - Xcc-8004.1331.1 0.82 -1.7
1,263,307 + Xcc-8004.1331.1 0.83 +0.8
1,263,308 - Xcc-8004.1331.1 0.83 -1.0
1,263,308 - Xcc-8004.1331.1 0.83 -0.5
1,263,469 + -0.8
1,263,767 - -1.3
1,263,767 - +0.4
1,264,023 + -2.1
1,264,024 - +0.1
1,264,098 + Xcc-8004.1332.1 0.16 +0.6
1,264,099 - Xcc-8004.1332.1 0.16 -1.1
1,264,099 - Xcc-8004.1332.1 0.16 +0.9
1,264,099 - Xcc-8004.1332.1 0.16 -0.4
1,264,134 + Xcc-8004.1332.1 0.20 +1.5
1,264,134 + Xcc-8004.1332.1 0.20 +0.3
1,264,134 + Xcc-8004.1332.1 0.20 +0.9
1,264,135 - Xcc-8004.1332.1 0.20 +1.1
1,264,206 - Xcc-8004.1332.1 0.27 +0.6
1,264,242 + Xcc-8004.1332.1 0.31 +0.3
1,264,242 + Xcc-8004.1332.1 0.31 -0.8
1,264,242 + Xcc-8004.1332.1 0.31 +0.4
1,264,242 + Xcc-8004.1332.1 0.31 -1.7
1,264,242 + Xcc-8004.1332.1 0.31 +0.3
1,264,242 + Xcc-8004.1332.1 0.31 +0.1
1,264,242 + Xcc-8004.1332.1 0.31 +1.9
1,264,242 + Xcc-8004.1332.1 0.31 +0.8
1,264,243 - Xcc-8004.1332.1 0.32 -0.5
1,264,243 - Xcc-8004.1332.1 0.32 -0.4
1,264,243 - Xcc-8004.1332.1 0.32 +1.2
1,264,243 - Xcc-8004.1332.1 0.32 +0.6
1,264,243 - Xcc-8004.1332.1 0.32 +0.5
1,264,243 - Xcc-8004.1332.1 0.32 +2.0
1,264,243 - Xcc-8004.1332.1 0.32 -0.6
1,264,244 + Xcc-8004.1332.1 0.32 +1.5
1,264,245 - Xcc-8004.1332.1 0.32 +0.6
1,264,320 - Xcc-8004.1332.1 0.40 -1.4
1,264,326 - Xcc-8004.1332.1 0.41 +2.0

Or see this region's nucleotide sequence