Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1282.1 and Xcc-8004.1283.1 are separated by 66 nucleotides Xcc-8004.1283.1 and Xcc-8004.1284.1 are separated by 24 nucleotides Xcc-8004.1284.1 and Xcc-8004.1285.1 are separated by 48 nucleotides
Xcc-8004.1282.1: Xcc-8004.1282.1 - sulfur deprivation response regulator, at 1,224,867 to 1,226,729
Xcc-8004.1282.1
Xcc-8004.1283.1: Xcc-8004.1283.1 - tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33), at 1,226,796 to 1,227,701
Xcc-8004.1283.1
Xcc-8004.1284.1: Xcc-8004.1284.1 - Thiazole biosynthesis protein ThiG, at 1,227,726 to 1,228,520
Xcc-8004.1284.1
Xcc-8004.1285.1: Xcc-8004.1285.1 - Sulfur carrier protein ThiS, at 1,228,569 to 1,228,724
Xcc-8004.1285.1
Position (kb) 1226
1227
1228 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1226.011 kb on + strand, within Xcc-8004.1282.1 at 1226.026 kb on + strand, within Xcc-8004.1282.1 at 1226.026 kb on + strand, within Xcc-8004.1282.1 at 1226.027 kb on - strand, within Xcc-8004.1282.1 at 1226.111 kb on - strand, within Xcc-8004.1282.1 at 1226.111 kb on - strand, within Xcc-8004.1282.1 at 1226.359 kb on + strand, within Xcc-8004.1282.1 at 1226.359 kb on + strand, within Xcc-8004.1282.1 at 1226.669 kb on + strand at 1226.669 kb on + strand at 1226.670 kb on - strand at 1226.860 kb on + strand at 1226.860 kb on + strand at 1226.860 kb on + strand at 1226.860 kb on + strand at 1226.860 kb on + strand at 1226.861 kb on - strand at 1226.861 kb on - strand at 1227.013 kb on + strand, within Xcc-8004.1283.1 at 1227.142 kb on + strand, within Xcc-8004.1283.1 at 1227.143 kb on - strand, within Xcc-8004.1283.1 at 1227.211 kb on + strand, within Xcc-8004.1283.1 at 1227.211 kb on + strand, within Xcc-8004.1283.1 at 1227.212 kb on - strand, within Xcc-8004.1283.1 at 1227.295 kb on + strand, within Xcc-8004.1283.1 at 1227.295 kb on + strand, within Xcc-8004.1283.1 at 1227.295 kb on + strand, within Xcc-8004.1283.1 at 1227.295 kb on + strand, within Xcc-8004.1283.1 at 1227.296 kb on - strand, within Xcc-8004.1283.1 at 1227.296 kb on - strand, within Xcc-8004.1283.1 at 1227.296 kb on - strand, within Xcc-8004.1283.1 at 1227.296 kb on - strand, within Xcc-8004.1283.1 at 1227.296 kb on - strand, within Xcc-8004.1283.1 at 1227.418 kb on + strand, within Xcc-8004.1283.1 at 1227.418 kb on + strand, within Xcc-8004.1283.1 at 1227.473 kb on + strand, within Xcc-8004.1283.1 at 1227.637 kb on - strand at 1227.767 kb on - strand at 1227.995 kb on - strand, within Xcc-8004.1284.1 at 1227.995 kb on - strand, within Xcc-8004.1284.1 at 1227.995 kb on - strand, within Xcc-8004.1284.1 at 1227.995 kb on - strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.102 kb on + strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.103 kb on - strand, within Xcc-8004.1284.1 at 1228.274 kb on - strand, within Xcc-8004.1284.1 at 1228.287 kb on - strand, within Xcc-8004.1284.1 at 1228.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 1,226,011 + Xcc-8004.1282.1 0.61 -1.4 1,226,026 + Xcc-8004.1282.1 0.62 -1.9 1,226,026 + Xcc-8004.1282.1 0.62 -0.4 1,226,027 - Xcc-8004.1282.1 0.62 -1.8 1,226,111 - Xcc-8004.1282.1 0.67 -2.9 1,226,111 - Xcc-8004.1282.1 0.67 -1.4 1,226,359 + Xcc-8004.1282.1 0.80 -0.9 1,226,359 + Xcc-8004.1282.1 0.80 -1.2 1,226,669 + -0.7 1,226,669 + -1.9 1,226,670 - -1.7 1,226,860 + +0.1 1,226,860 + -2.4 1,226,860 + -0.4 1,226,860 + -0.5 1,226,860 + +0.6 1,226,861 - -1.0 1,226,861 - -0.4 1,227,013 + Xcc-8004.1283.1 0.24 +0.4 1,227,142 + Xcc-8004.1283.1 0.38 -0.9 1,227,143 - Xcc-8004.1283.1 0.38 +0.3 1,227,211 + Xcc-8004.1283.1 0.46 +0.1 1,227,211 + Xcc-8004.1283.1 0.46 -1.7 1,227,212 - Xcc-8004.1283.1 0.46 -0.1 1,227,295 + Xcc-8004.1283.1 0.55 -1.4 1,227,295 + Xcc-8004.1283.1 0.55 -0.7 1,227,295 + Xcc-8004.1283.1 0.55 +0.2 1,227,295 + Xcc-8004.1283.1 0.55 +0.4 1,227,296 - Xcc-8004.1283.1 0.55 -0.2 1,227,296 - Xcc-8004.1283.1 0.55 +0.1 1,227,296 - Xcc-8004.1283.1 0.55 -1.2 1,227,296 - Xcc-8004.1283.1 0.55 +0.6 1,227,296 - Xcc-8004.1283.1 0.55 +0.7 1,227,418 + Xcc-8004.1283.1 0.69 -1.0 1,227,418 + Xcc-8004.1283.1 0.69 -3.6 1,227,473 + Xcc-8004.1283.1 0.75 -3.3 1,227,637 - -0.1 1,227,767 - +0.4 1,227,995 - Xcc-8004.1284.1 0.34 -0.6 1,227,995 - Xcc-8004.1284.1 0.34 -2.3 1,227,995 - Xcc-8004.1284.1 0.34 -1.0 1,227,995 - Xcc-8004.1284.1 0.34 -0.3 1,228,102 + Xcc-8004.1284.1 0.47 -1.6 1,228,102 + Xcc-8004.1284.1 0.47 -1.4 1,228,102 + Xcc-8004.1284.1 0.47 -1.9 1,228,102 + Xcc-8004.1284.1 0.47 -0.6 1,228,102 + Xcc-8004.1284.1 0.47 +0.2 1,228,102 + Xcc-8004.1284.1 0.47 -2.5 1,228,102 + Xcc-8004.1284.1 0.47 -0.6 1,228,102 + Xcc-8004.1284.1 0.47 -1.9 1,228,102 + Xcc-8004.1284.1 0.47 -0.1 1,228,102 + Xcc-8004.1284.1 0.47 -2.3 1,228,102 + Xcc-8004.1284.1 0.47 +1.6 1,228,102 + Xcc-8004.1284.1 0.47 -1.6 1,228,103 - Xcc-8004.1284.1 0.47 -0.2 1,228,103 - Xcc-8004.1284.1 0.47 -1.6 1,228,103 - Xcc-8004.1284.1 0.47 +1.3 1,228,103 - Xcc-8004.1284.1 0.47 -0.3 1,228,103 - Xcc-8004.1284.1 0.47 -1.9 1,228,103 - Xcc-8004.1284.1 0.47 -1.8 1,228,274 - Xcc-8004.1284.1 0.69 -2.1 1,228,287 - Xcc-8004.1284.1 0.71 -2.8 1,228,472 - -2.6
Or see this region's nucleotide sequence