Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1208.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1207.1 and Xcc-8004.1208.1 are separated by 77 nucleotidesXcc-8004.1208.1 and Xcc-8004.1209.1 are separated by 19 nucleotides Xcc-8004.1207.1: Xcc-8004.1207.1 - probable porin, at 1,140,917 to 1,142,188 Xcc-8004.1207.1 Xcc-8004.1208.1: Xcc-8004.1208.1 - Glucarate dehydratase (EC 4.2.1.40), at 1,142,266 to 1,143,621 Xcc-8004.1208.1 Xcc-8004.1209.1: Xcc-8004.1209.1 - D-galactarate permease, at 1,143,641 to 1,145,002 Xcc-8004.1209.1 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1141.363 kb on + strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.473 kb on + strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.520 kb on + strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.757 kb on + strand, within Xcc-8004.1207.1at 1141.969 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.971 kb on + strand, within Xcc-8004.1207.1at 1141.972 kb on - strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.055 kb on + strand, within Xcc-8004.1207.1at 1142.056 kb on - strand, within Xcc-8004.1207.1at 1142.056 kb on - strand, within Xcc-8004.1207.1at 1142.058 kb on + strand, within Xcc-8004.1207.1at 1142.059 kb on - strand, within Xcc-8004.1207.1at 1142.177 kb on + strandat 1142.178 kb on - strandat 1142.178 kb on - strandat 1142.267 kb on + strandat 1142.268 kb on - strandat 1142.366 kb on + strandat 1142.367 kb on - strandat 1142.506 kb on - strand, within Xcc-8004.1208.1at 1142.568 kb on + strand, within Xcc-8004.1208.1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.910 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.156 kb on - strand, within Xcc-8004.1208.1at 1143.366 kb on - strand, within Xcc-8004.1208.1at 1143.500 kb on + strandat 1143.500 kb on + strandat 1143.501 kb on - strandat 1143.988 kb on - strand, within Xcc-8004.1209.1at 1143.988 kb on - strand, within Xcc-8004.1209.1at 1144.188 kb on + strand, within Xcc-8004.1209.1at 1144.215 kb on + strand, within Xcc-8004.1209.1at 1144.216 kb on - strand, within Xcc-8004.1209.1at 1144.248 kb on + strand, within Xcc-8004.1209.1at 1144.249 kb on - strand, within Xcc-8004.1209.1at 1144.249 kb on - strand, within Xcc-8004.1209.1at 1144.371 kb on + strand, within Xcc-8004.1209.1at 1144.371 kb on + strand, within Xcc-8004.1209.1at 1144.372 kb on - strand, within Xcc-8004.1209.1at 1144.372 kb on - strand, within Xcc-8004.1209.1at 1144.416 kb on + strand, within Xcc-8004.1209.1at 1144.416 kb on + strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
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1,141,363 + Xcc-8004.1207.1 0.35 +0.1
1,141,364 - Xcc-8004.1207.1 0.35 -0.5
1,141,364 - Xcc-8004.1207.1 0.35 -0.2
1,141,364 - Xcc-8004.1207.1 0.35 -0.5
1,141,364 - Xcc-8004.1207.1 0.35 -0.3
1,141,364 - Xcc-8004.1207.1 0.35 -0.6
1,141,473 + Xcc-8004.1207.1 0.44 +0.3
1,141,474 - Xcc-8004.1207.1 0.44 -2.2
1,141,474 - Xcc-8004.1207.1 0.44 +0.9
1,141,520 + Xcc-8004.1207.1 0.47 +0.3
1,141,521 - Xcc-8004.1207.1 0.47 +0.2
1,141,521 - Xcc-8004.1207.1 0.47 +1.4
1,141,521 - Xcc-8004.1207.1 0.47 -1.2
1,141,545 + Xcc-8004.1207.1 0.49 +1.6
1,141,545 + Xcc-8004.1207.1 0.49 +0.8
1,141,545 + Xcc-8004.1207.1 0.49 +1.2
1,141,546 - Xcc-8004.1207.1 0.49 +0.5
1,141,546 - Xcc-8004.1207.1 0.49 +0.0
1,141,757 + Xcc-8004.1207.1 0.66 +0.9
1,141,969 + Xcc-8004.1207.1 0.83 +2.2
1,141,971 + Xcc-8004.1207.1 0.83 +0.1
1,141,971 + Xcc-8004.1207.1 0.83 +1.4
1,141,971 + Xcc-8004.1207.1 0.83 +1.6
1,141,972 - Xcc-8004.1207.1 0.83 -0.5
1,142,055 + Xcc-8004.1207.1 0.89 +1.7
1,142,055 + Xcc-8004.1207.1 0.89 +0.5
1,142,055 + Xcc-8004.1207.1 0.89 -0.3
1,142,056 - Xcc-8004.1207.1 0.90 -0.5
1,142,056 - Xcc-8004.1207.1 0.90 +0.4
1,142,058 + Xcc-8004.1207.1 0.90 +0.8
1,142,059 - Xcc-8004.1207.1 0.90 +3.2
1,142,177 + +0.9
1,142,178 - -2.2
1,142,178 - +0.7
1,142,267 + -2.0
1,142,268 - -0.9
1,142,366 + +1.8
1,142,367 - -1.6
1,142,506 - Xcc-8004.1208.1 0.18 -2.2
1,142,568 + Xcc-8004.1208.1 0.22 -0.4
1,142,680 - Xcc-8004.1208.1 0.31 +0.8
1,142,680 - Xcc-8004.1208.1 0.31 +1.4
1,142,910 + Xcc-8004.1208.1 0.47 +0.2
1,143,008 + Xcc-8004.1208.1 0.55 +0.8
1,143,008 + Xcc-8004.1208.1 0.55 +1.0
1,143,008 + Xcc-8004.1208.1 0.55 +1.5
1,143,008 + Xcc-8004.1208.1 0.55 +1.1
1,143,008 + Xcc-8004.1208.1 0.55 -0.7
1,143,156 - Xcc-8004.1208.1 0.66 +0.6
1,143,366 - Xcc-8004.1208.1 0.81 -0.2
1,143,500 + +0.0
1,143,500 + +0.4
1,143,501 - +0.6
1,143,988 - Xcc-8004.1209.1 0.25 +0.6
1,143,988 - Xcc-8004.1209.1 0.25 +1.7
1,144,188 + Xcc-8004.1209.1 0.40 +0.3
1,144,215 + Xcc-8004.1209.1 0.42 -0.1
1,144,216 - Xcc-8004.1209.1 0.42 -1.7
1,144,248 + Xcc-8004.1209.1 0.45 -0.6
1,144,249 - Xcc-8004.1209.1 0.45 +0.2
1,144,249 - Xcc-8004.1209.1 0.45 +0.9
1,144,371 + Xcc-8004.1209.1 0.54 +0.5
1,144,371 + Xcc-8004.1209.1 0.54 -2.1
1,144,372 - Xcc-8004.1209.1 0.54 +0.3
1,144,372 - Xcc-8004.1209.1 0.54 -2.1
1,144,416 + Xcc-8004.1209.1 0.57 +0.1
1,144,416 + Xcc-8004.1209.1 0.57 -2.4
1,144,417 - Xcc-8004.1209.1 0.57 +1.0
1,144,417 - Xcc-8004.1209.1 0.57 +0.2
1,144,417 - Xcc-8004.1209.1 0.57 +0.2
1,144,417 - Xcc-8004.1209.1 0.57 -1.0
1,144,417 - Xcc-8004.1209.1 0.57 -1.4

Or see this region's nucleotide sequence