Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03652 and CCNA_03653 are separated by 123 nucleotides CCNA_03653 and CCNA_03910 are separated by 212 nucleotides CCNA_03910 and CCNA_03655 are separated by 85 nucleotides
CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310
_03652
CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766
_03653
CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086
_03910
CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485
_03655
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3814.981 kb on - strand at 3814.983 kb on + strand at 3814.988 kb on + strand at 3814.991 kb on - strand at 3815.014 kb on - strand at 3815.038 kb on + strand at 3815.040 kb on - strand at 3815.044 kb on + strand at 3815.062 kb on - strand at 3815.170 kb on - strand at 3815.230 kb on + strand at 3815.235 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.257 kb on - strand at 3815.277 kb on + strand at 3815.285 kb on + strand at 3815.305 kb on + strand at 3815.305 kb on + strand at 3815.305 kb on + strand at 3815.312 kb on - strand at 3815.313 kb on - strand at 3815.336 kb on + strand at 3815.344 kb on - strand at 3815.378 kb on - strand at 3815.420 kb on + strand at 3815.425 kb on + strand at 3815.428 kb on - strand at 3815.770 kb on + strand at 3815.800 kb on - strand at 3815.860 kb on + strand at 3815.923 kb on + strand at 3815.936 kb on - strand at 3815.938 kb on + strand at 3816.004 kb on + strand, within CCNA_03910 at 3816.012 kb on - strand, within CCNA_03910 at 3816.069 kb on + strand, within CCNA_03910 at 3816.145 kb on - strand at 3816.155 kb on - strand at 3816.159 kb on - strand at 3816.169 kb on + strand at 3816.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 3,814,981 - -2.8 3,814,983 + -0.6 3,814,988 + +2.0 3,814,991 - +0.4 3,815,014 - +1.3 3,815,038 + -0.5 3,815,040 - -0.4 3,815,044 + +1.1 3,815,062 - -2.4 3,815,170 - +1.1 3,815,230 + -1.7 3,815,235 + +0.4 3,815,249 + -1.2 3,815,249 + -0.8 3,815,249 + -0.6 3,815,249 + -2.2 3,815,249 + -1.3 3,815,249 + +0.7 3,815,249 + +1.6 3,815,257 - +0.4 3,815,277 + +0.6 3,815,285 + +0.9 3,815,305 + -0.4 3,815,305 + -2.1 3,815,305 + +2.0 3,815,312 - -1.1 3,815,313 - -1.4 3,815,336 + +0.4 3,815,344 - +0.6 3,815,378 - -1.3 3,815,420 + +0.2 3,815,425 + +0.3 3,815,428 - +0.7 3,815,770 + -0.4 3,815,800 - +0.4 3,815,860 + +0.7 3,815,923 + +0.4 3,815,936 - -0.1 3,815,938 + -1.0 3,816,004 + CCNA_03910 0.23 +0.5 3,816,012 - CCNA_03910 0.31 -2.0 3,816,069 + CCNA_03910 0.83 -1.8 3,816,145 - -1.2 3,816,155 - +0.1 3,816,159 - +1.0 3,816,169 + +2.4 3,816,177 - +1.7
Or see this region's nucleotide sequence