Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02733 and CCNA_02734 are separated by 0 nucleotides CCNA_02734 and CCNA_02735 are separated by 43 nucleotides CCNA_02735 and CCNA_02736 are separated by 4 nucleotides CCNA_02736 and CCNA_02737 are separated by 8 nucleotides
CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212
_02733
CCNA_02734: CCNA_02734 - serine acetyltransferase, at 2,896,213 to 2,897,085
_02734
CCNA_02735: CCNA_02735 - ADP-ribose pyrophosphatase family protein, at 2,897,129 to 2,897,845
_02735
CCNA_02736: CCNA_02736 - nitroreductase family, at 2,897,850 to 2,898,464
_02736
CCNA_02737: CCNA_02737 - queuosine biosynthesis protein QueF, at 2,898,473 to 2,898,928
_02737
Position (kb)
2897
2898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2896.171 kb on + strand at 2896.179 kb on - strand at 2896.249 kb on + strand at 2896.254 kb on + strand at 2896.276 kb on - strand at 2896.343 kb on - strand, within CCNA_02734 at 2896.496 kb on - strand at 2896.638 kb on - strand, within CCNA_02734 at 2896.744 kb on - strand, within CCNA_02734 at 2897.000 kb on + strand at 2897.018 kb on + strand at 2897.146 kb on - strand at 2897.146 kb on - strand at 2897.146 kb on - strand at 2897.178 kb on + strand at 2897.178 kb on + strand at 2897.178 kb on + strand at 2897.178 kb on + strand at 2897.181 kb on + strand at 2897.186 kb on - strand at 2897.193 kb on - strand at 2897.233 kb on - strand, within CCNA_02735 at 2897.261 kb on + strand, within CCNA_02735 at 2897.313 kb on - strand, within CCNA_02735 at 2897.325 kb on + strand, within CCNA_02735 at 2897.339 kb on + strand, within CCNA_02735 at 2897.347 kb on - strand, within CCNA_02735 at 2897.439 kb on - strand, within CCNA_02735 at 2897.439 kb on - strand, within CCNA_02735 at 2897.483 kb on + strand, within CCNA_02735 at 2897.501 kb on - strand, within CCNA_02735 at 2897.527 kb on - strand, within CCNA_02735 at 2897.533 kb on + strand, within CCNA_02735 at 2897.541 kb on - strand, within CCNA_02735 at 2897.560 kb on + strand, within CCNA_02735 at 2897.595 kb on - strand, within CCNA_02735 at 2897.603 kb on - strand, within CCNA_02735 at 2897.631 kb on + strand, within CCNA_02735 at 2897.639 kb on - strand, within CCNA_02735 at 2897.650 kb on - strand, within CCNA_02735 at 2897.655 kb on - strand, within CCNA_02735 at 2897.681 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.710 kb on + strand, within CCNA_02735 at 2897.717 kb on - strand, within CCNA_02735 at 2897.717 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.766 kb on - strand, within CCNA_02735 at 2897.796 kb on - strand at 2897.816 kb on + strand at 2897.857 kb on + strand at 2897.865 kb on - strand at 2897.865 kb on - strand at 2897.880 kb on - strand at 2897.883 kb on + strand at 2897.891 kb on - strand at 2897.916 kb on + strand, within CCNA_02736 at 2897.924 kb on - strand, within CCNA_02736 at 2897.924 kb on - strand, within CCNA_02736 at 2897.965 kb on - strand, within CCNA_02736 at 2897.965 kb on - strand, within CCNA_02736 at 2897.982 kb on - strand, within CCNA_02736 at 2898.038 kb on + strand, within CCNA_02736 at 2898.055 kb on + strand, within CCNA_02736 at 2898.060 kb on + strand, within CCNA_02736 at 2898.063 kb on - strand, within CCNA_02736 at 2898.068 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.139 kb on - strand, within CCNA_02736 at 2898.145 kb on - strand, within CCNA_02736 at 2898.160 kb on - strand, within CCNA_02736 at 2898.173 kb on + strand, within CCNA_02736 at 2898.228 kb on - strand, within CCNA_02736 at 2898.228 kb on - strand, within CCNA_02736 at 2898.241 kb on + strand, within CCNA_02736 at 2898.269 kb on + strand, within CCNA_02736 at 2898.279 kb on + strand, within CCNA_02736 at 2898.279 kb on + strand, within CCNA_02736 at 2898.284 kb on + strand, within CCNA_02736 at 2898.287 kb on - strand, within CCNA_02736 at 2898.292 kb on - strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.319 kb on + strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.327 kb on - strand, within CCNA_02736 at 2898.342 kb on + strand, within CCNA_02736 at 2898.383 kb on - strand, within CCNA_02736 at 2898.449 kb on + strand at 2898.481 kb on + strand at 2898.514 kb on + strand at 2898.637 kb on + strand, within CCNA_02737 at 2898.741 kb on - strand, within CCNA_02737 at 2898.752 kb on - strand, within CCNA_02737 at 2898.759 kb on + strand, within CCNA_02737 at 2898.777 kb on - strand, within CCNA_02737 at 2898.797 kb on - strand, within CCNA_02737 at 2898.826 kb on + strand, within CCNA_02737
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,896,171 + -1.4 2,896,179 - -0.8 2,896,249 + -0.3 2,896,254 + -3.2 2,896,276 - +2.0 2,896,343 - CCNA_02734 0.15 -0.8 2,896,496 - +0.7 2,896,638 - CCNA_02734 0.49 +1.7 2,896,744 - CCNA_02734 0.61 -0.1 2,897,000 + -0.8 2,897,018 + -1.3 2,897,146 - -1.4 2,897,146 - -1.1 2,897,146 - +0.2 2,897,178 + +3.5 2,897,178 + +1.3 2,897,178 + +1.2 2,897,178 + -0.5 2,897,181 + +0.7 2,897,186 - -1.7 2,897,193 - +0.3 2,897,233 - CCNA_02735 0.15 +0.5 2,897,261 + CCNA_02735 0.18 -1.4 2,897,313 - CCNA_02735 0.26 +1.1 2,897,325 + CCNA_02735 0.27 +1.4 2,897,339 + CCNA_02735 0.29 -0.5 2,897,347 - CCNA_02735 0.30 +0.2 2,897,439 - CCNA_02735 0.43 +0.3 2,897,439 - CCNA_02735 0.43 +0.1 2,897,483 + CCNA_02735 0.49 -2.5 2,897,501 - CCNA_02735 0.52 +0.2 2,897,527 - CCNA_02735 0.56 +0.7 2,897,533 + CCNA_02735 0.56 -2.9 2,897,541 - CCNA_02735 0.57 -1.0 2,897,560 + CCNA_02735 0.60 +1.2 2,897,595 - CCNA_02735 0.65 +2.4 2,897,603 - CCNA_02735 0.66 -2.8 2,897,631 + CCNA_02735 0.70 +2.1 2,897,639 - CCNA_02735 0.71 -1.3 2,897,650 - CCNA_02735 0.73 -0.1 2,897,655 - CCNA_02735 0.73 +1.0 2,897,681 + CCNA_02735 0.77 +2.3 2,897,691 + CCNA_02735 0.78 -0.8 2,897,691 + CCNA_02735 0.78 +2.7 2,897,691 + CCNA_02735 0.78 -1.9 2,897,691 + CCNA_02735 0.78 +1.2 2,897,691 + CCNA_02735 0.78 -0.6 2,897,691 + CCNA_02735 0.78 +3.4 2,897,691 + CCNA_02735 0.78 +0.7 2,897,691 + CCNA_02735 0.78 +1.6 2,897,691 + CCNA_02735 0.78 -0.3 2,897,691 + CCNA_02735 0.78 +0.4 2,897,691 + CCNA_02735 0.78 +3.4 2,897,691 + CCNA_02735 0.78 -0.1 2,897,691 + CCNA_02735 0.78 +2.3 2,897,699 - CCNA_02735 0.79 +0.7 2,897,699 - CCNA_02735 0.79 +0.8 2,897,699 - CCNA_02735 0.79 +0.1 2,897,699 - CCNA_02735 0.79 +1.6 2,897,699 - CCNA_02735 0.79 -2.5 2,897,699 - CCNA_02735 0.79 +2.4 2,897,699 - CCNA_02735 0.79 +1.6 2,897,699 - CCNA_02735 0.79 +0.7 2,897,699 - CCNA_02735 0.79 -2.3 2,897,699 - CCNA_02735 0.79 -1.6 2,897,699 - CCNA_02735 0.79 -1.8 2,897,710 + CCNA_02735 0.81 -2.2 2,897,717 - CCNA_02735 0.82 -2.9 2,897,717 - CCNA_02735 0.82 +1.2 2,897,718 - CCNA_02735 0.82 +0.2 2,897,766 - CCNA_02735 0.89 -1.0 2,897,796 - -2.2 2,897,816 + -0.8 2,897,857 + -0.1 2,897,865 - +1.4 2,897,865 - -0.2 2,897,880 - +0.8 2,897,883 + +0.5 2,897,891 - +2.4 2,897,916 + CCNA_02736 0.11 +1.6 2,897,924 - CCNA_02736 0.12 -1.7 2,897,924 - CCNA_02736 0.12 -1.3 2,897,965 - CCNA_02736 0.19 +0.4 2,897,965 - CCNA_02736 0.19 +1.7 2,897,982 - CCNA_02736 0.21 +0.8 2,898,038 + CCNA_02736 0.31 +1.3 2,898,055 + CCNA_02736 0.33 -0.9 2,898,060 + CCNA_02736 0.34 -3.0 2,898,063 - CCNA_02736 0.35 -0.8 2,898,068 - CCNA_02736 0.35 -1.7 2,898,082 - CCNA_02736 0.38 +0.1 2,898,139 - CCNA_02736 0.47 -1.0 2,898,145 - CCNA_02736 0.48 -0.9 2,898,160 - CCNA_02736 0.50 +0.9 2,898,173 + CCNA_02736 0.53 +0.1 2,898,228 - CCNA_02736 0.61 +1.8 2,898,228 - CCNA_02736 0.61 +0.2 2,898,241 + CCNA_02736 0.64 +0.5 2,898,269 + CCNA_02736 0.68 -0.1 2,898,279 + CCNA_02736 0.70 -0.6 2,898,279 + CCNA_02736 0.70 +1.1 2,898,284 + CCNA_02736 0.71 +0.5 2,898,287 - CCNA_02736 0.71 -0.3 2,898,292 - CCNA_02736 0.72 +0.1 2,898,319 + CCNA_02736 0.76 -1.5 2,898,319 + CCNA_02736 0.76 +0.4 2,898,319 + CCNA_02736 0.76 +1.2 2,898,319 + CCNA_02736 0.76 +2.8 2,898,319 + CCNA_02736 0.76 +0.6 2,898,319 + CCNA_02736 0.76 -0.4 2,898,319 + CCNA_02736 0.76 -1.1 2,898,319 + CCNA_02736 0.76 +0.4 2,898,319 + CCNA_02736 0.76 +0.6 2,898,319 + CCNA_02736 0.76 +0.4 2,898,319 + CCNA_02736 0.76 +0.2 2,898,319 + CCNA_02736 0.76 +0.5 2,898,319 + CCNA_02736 0.76 +0.7 2,898,319 + CCNA_02736 0.76 +1.7 2,898,319 + CCNA_02736 0.76 +0.2 2,898,319 + CCNA_02736 0.76 +1.4 2,898,319 + CCNA_02736 0.76 -0.2 2,898,319 + CCNA_02736 0.76 -1.9 2,898,319 + CCNA_02736 0.76 -0.8 2,898,327 - CCNA_02736 0.78 +1.0 2,898,327 - CCNA_02736 0.78 +1.7 2,898,327 - CCNA_02736 0.78 -0.3 2,898,327 - CCNA_02736 0.78 -0.8 2,898,327 - +0.7 2,898,327 - CCNA_02736 0.78 +0.2 2,898,327 - CCNA_02736 0.78 -0.5 2,898,327 - CCNA_02736 0.78 +2.2 2,898,327 - CCNA_02736 0.78 -0.4 2,898,327 - CCNA_02736 0.78 -1.2 2,898,327 - CCNA_02736 0.78 +0.6 2,898,327 - CCNA_02736 0.78 +1.3 2,898,327 - CCNA_02736 0.78 +0.3 2,898,327 - CCNA_02736 0.78 -1.1 2,898,327 - CCNA_02736 0.78 +0.4 2,898,327 - CCNA_02736 0.78 +0.4 2,898,342 + CCNA_02736 0.80 +0.1 2,898,383 - CCNA_02736 0.87 +0.9 2,898,449 + +1.1 2,898,481 + -0.8 2,898,514 + -1.7 2,898,637 + CCNA_02737 0.36 -0.9 2,898,741 - CCNA_02737 0.59 -1.0 2,898,752 - CCNA_02737 0.61 -2.0 2,898,759 + CCNA_02737 0.63 -0.5 2,898,777 - CCNA_02737 0.67 -2.7 2,898,797 - CCNA_02737 0.71 -0.5 2,898,826 + CCNA_02737 0.77 -2.0
Or see this region's nucleotide sequence