Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02075 and CCNA_02076 are separated by 92 nucleotides CCNA_02076 and CCNA_02077 overlap by 4 nucleotides CCNA_02077 and CCNA_02078 overlap by 4 nucleotides
CCNA_02075: CCNA_02075 - peptidoglycan binding endopeptidase DipM, at 2,225,052 to 2,226,881
_02075
CCNA_02076: CCNA_02076 - protein-L-isoaspartate O-methyltransferase, at 2,226,974 to 2,227,642
_02076
CCNA_02077: CCNA_02077 - 5'(3')-nucleotidase/polyphosphatase SurE, at 2,227,639 to 2,228,430
_02077
CCNA_02078: CCNA_02078 - seryl-tRNA synthetase, at 2,228,427 to 2,229,875
_02078
Position (kb)
2227
2228
2229 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2226.865 kb on + strand at 2226.875 kb on + strand at 2226.919 kb on - strand at 2226.920 kb on - strand at 2226.943 kb on + strand at 2227.602 kb on + strand at 2227.610 kb on - strand at 2227.610 kb on - strand at 2227.687 kb on - strand at 2227.697 kb on + strand at 2227.845 kb on + strand, within CCNA_02077 at 2227.870 kb on + strand, within CCNA_02077 at 2227.955 kb on + strand, within CCNA_02077 at 2228.007 kb on - strand, within CCNA_02077 at 2228.007 kb on - strand, within CCNA_02077 at 2228.131 kb on - strand, within CCNA_02077 at 2228.221 kb on + strand, within CCNA_02077 at 2228.221 kb on + strand, within CCNA_02077 at 2228.285 kb on + strand, within CCNA_02077 at 2228.293 kb on - strand, within CCNA_02077 at 2228.374 kb on - strand at 2228.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,226,865 + -0.3 2,226,875 + +0.6 2,226,919 - -1.1 2,226,920 - +0.1 2,226,943 + -0.7 2,227,602 + -0.0 2,227,610 - +1.4 2,227,610 - -1.3 2,227,687 - -1.6 2,227,697 + -1.6 2,227,845 + CCNA_02077 0.26 -0.9 2,227,870 + CCNA_02077 0.29 -1.1 2,227,955 + CCNA_02077 0.40 +0.8 2,228,007 - CCNA_02077 0.46 +1.4 2,228,007 - CCNA_02077 0.46 +0.5 2,228,131 - CCNA_02077 0.62 -0.3 2,228,221 + CCNA_02077 0.73 -1.9 2,228,221 + CCNA_02077 0.73 -0.6 2,228,285 + CCNA_02077 0.82 -1.8 2,228,293 - CCNA_02077 0.83 +1.8 2,228,374 - +0.1 2,228,386 - +0.3
Or see this region's nucleotide sequence