Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01969

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01968 and CCNA_01969 are separated by 77 nucleotidesCCNA_01969 and CCNA_01970 are separated by 121 nucleotides CCNA_01968: CCNA_01968 - pentapeptide repeats containing protein, at 2,111,609 to 2,112,478 _01968 CCNA_01969: CCNA_01969 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,112,556 to 2,114,394 _01969 CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277 _01970 Position (kb) 2112 2113 2114 2115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2111.563 kb on - strandat 2111.585 kb on + strandat 2111.593 kb on - strandat 2111.600 kb on + strandat 2111.608 kb on - strandat 2111.708 kb on + strand, within CCNA_01968at 2111.923 kb on + strand, within CCNA_01968at 2112.332 kb on + strand, within CCNA_01968at 2112.378 kb on + strand, within CCNA_01968at 2112.378 kb on + strand, within CCNA_01968at 2112.378 kb on + strand, within CCNA_01968at 2112.422 kb on + strandat 2112.557 kb on - strandat 2114.484 kb on + strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.309 kb on - strandat 2115.311 kb on - strandat 2115.344 kb on + strandat 2115.347 kb on + strandat 2115.349 kb on + strandat 2115.349 kb on + strandat 2115.355 kb on - strandat 2115.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,111,563 - -2.2
2,111,585 + -1.6
2,111,593 - -1.0
2,111,600 + -1.4
2,111,608 - -0.1
2,111,708 + CCNA_01968 0.11 +0.4
2,111,923 + CCNA_01968 0.36 -0.5
2,112,332 + CCNA_01968 0.83 +0.4
2,112,378 + CCNA_01968 0.88 -1.5
2,112,378 + CCNA_01968 0.88 -1.0
2,112,378 + CCNA_01968 0.88 -0.4
2,112,422 + -2.5
2,112,557 - -0.0
2,114,484 + -1.1
2,115,309 - +0.3
2,115,309 - -0.6
2,115,309 - -2.3
2,115,309 - +2.9
2,115,309 - -0.4
2,115,309 - +0.2
2,115,311 - +1.1
2,115,344 + -0.3
2,115,347 + +1.3
2,115,349 + -2.1
2,115,349 + -2.7
2,115,355 - +1.5
2,115,355 - -0.2

Or see this region's nucleotide sequence