Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01968 and CCNA_01969 are separated by 77 nucleotides CCNA_01969 and CCNA_01970 are separated by 121 nucleotides
CCNA_01968: CCNA_01968 - pentapeptide repeats containing protein, at 2,111,609 to 2,112,478
_01968
CCNA_01969: CCNA_01969 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data) , at 2,112,556 to 2,114,394
_01969
CCNA_01970: CCNA_01970 - triosephosphate isomerase, at 2,114,516 to 2,115,277
_01970
Position (kb)
2112
2113
2114
2115 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2111.563 kb on - strand at 2111.585 kb on + strand at 2111.593 kb on - strand at 2111.600 kb on + strand at 2111.608 kb on - strand at 2111.708 kb on + strand, within CCNA_01968 at 2111.923 kb on + strand, within CCNA_01968 at 2112.332 kb on + strand, within CCNA_01968 at 2112.378 kb on + strand, within CCNA_01968 at 2112.378 kb on + strand, within CCNA_01968 at 2112.378 kb on + strand, within CCNA_01968 at 2112.422 kb on + strand at 2112.557 kb on - strand at 2114.484 kb on + strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.309 kb on - strand at 2115.311 kb on - strand at 2115.344 kb on + strand at 2115.347 kb on + strand at 2115.349 kb on + strand at 2115.349 kb on + strand at 2115.355 kb on - strand at 2115.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,111,563 - -2.2 2,111,585 + -1.6 2,111,593 - -1.0 2,111,600 + -1.4 2,111,608 - -0.1 2,111,708 + CCNA_01968 0.11 +0.4 2,111,923 + CCNA_01968 0.36 -0.5 2,112,332 + CCNA_01968 0.83 +0.4 2,112,378 + CCNA_01968 0.88 -1.5 2,112,378 + CCNA_01968 0.88 -1.0 2,112,378 + CCNA_01968 0.88 -0.4 2,112,422 + -2.5 2,112,557 - -0.0 2,114,484 + -1.1 2,115,309 - +0.3 2,115,309 - -0.6 2,115,309 - -2.3 2,115,309 - +2.9 2,115,309 - -0.4 2,115,309 - +0.2 2,115,311 - +1.1 2,115,344 + -0.3 2,115,347 + +1.3 2,115,349 + -2.1 2,115,349 + -2.7 2,115,355 - +1.5 2,115,355 - -0.2
Or see this region's nucleotide sequence