Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01668

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
1,789,706	-				+0.3
1,789,706	-				-1.7
1,789,749	+				+2.2
1,789,759	+				-0.0
1,789,776	+				+1.7
1,789,853	+		CCNA_01667	0.16	-0.1
1,789,870	-		CCNA_01667	0.18	-1.7
1,789,872	+		CCNA_01667	0.19	+1.7
1,789,872	+		CCNA_01667	0.19	-0.6
1,789,872	+		CCNA_01667	0.19	-0.0
1,789,877	+		CCNA_01667	0.19	+1.2
1,789,885	-		CCNA_01667	0.20	-0.8
1,789,893	+		CCNA_01667	0.22	+0.3
1,789,915	-		CCNA_01667	0.25	-0.8
1,789,915	-		CCNA_01667	0.25	-2.6
1,789,920	-		CCNA_01667	0.25	-2.4
1,789,932	+		CCNA_01667	0.27	+1.3
1,789,970	+		CCNA_01667	0.33	+0.6
1,789,976	+		CCNA_01667	0.33	+1.8
1,789,976	+		CCNA_01667	0.33	+3.5
1,790,036	+		CCNA_01667	0.42	+1.0
1,790,044	-		CCNA_01667	0.43	-0.3
1,790,044	-		CCNA_01667	0.43	-0.7
1,790,125	+		CCNA_01667	0.55	+2.5
1,790,143	-		CCNA_01667	0.57	-0.8
1,790,163	+		CCNA_01667	0.60	+2.1
1,790,163	+		CCNA_01667	0.60	-1.1
1,790,171	-		CCNA_01667	0.61	+1.8
1,790,171	-		CCNA_01667	0.61	+0.6
1,790,228	-		CCNA_01667	0.70	-1.5
1,790,228	-		CCNA_01667	0.70	-1.8
1,790,256	+		CCNA_01667	0.74	+1.0
1,790,256	+		CCNA_01667	0.74	+1.3
1,790,269	-		CCNA_01667	0.75	+0.8
1,790,269	-		CCNA_01667	0.75	+2.2
1,790,269	-		CCNA_01667	0.75	-1.1
1,790,323	+		CCNA_01667	0.83	-0.7
1,790,325	+		CCNA_01667	0.83	+2.0
1,790,325	+		CCNA_01667	0.83	-0.9
1,790,331	-		CCNA_01667	0.84	-1.3
1,790,331	-		CCNA_01667	0.84	+0.7
1,790,333	-		CCNA_01667	0.85	+1.3
1,790,333	-		CCNA_01667	0.85	-1.0
1,790,367	-		CCNA_01667	0.89	+0.1
1,790,385	+				-0.7
1,790,447	+				-1.0
1,790,447	+				+1.0
1,790,503	+				+0.7
1,790,527	-				-1.2
1,790,596	+				-0.9
1,790,596	+				-0.7
1,790,596	+				+1.1
1,790,621	+				-1.7
1,790,662	-				-3.3
1,790,700	+				-0.8
1,790,736	+				+0.5
1,790,737	+				+0.9
1,790,737	+				+1.1
1,790,745	-				-0.5
1,790,791	+				-1.0
1,790,793	-		CCNA_01668	0.10	-2.6
1,790,796	+		CCNA_01668	0.11	-0.7
1,790,796	+		CCNA_01668	0.11	-1.0
1,790,852	+		CCNA_01668	0.17	-2.6
1,790,857	+		CCNA_01668	0.18	-2.8
1,790,859	+		CCNA_01668	0.18	-1.7
1,790,859	+		CCNA_01668	0.18	-1.2
1,790,884	+		CCNA_01668	0.21	-1.6
1,790,889	+		CCNA_01668	0.21	-2.1
1,790,889	+		CCNA_01668	0.21	-3.9
1,790,889	+		CCNA_01668	0.21	-0.7
1,790,897	-		CCNA_01668	0.22	-3.4
1,790,947	-		CCNA_01668	0.28	-1.5
1,790,977	-		CCNA_01668	0.31	-0.9
1,790,989	+		CCNA_01668	0.33	-1.1
1,790,995	+		CCNA_01668	0.33	-2.7
1,790,995	+		CCNA_01668	0.33	-2.0
1,790,996	-		CCNA_01668	0.33	-2.8
1,791,043	+		CCNA_01668	0.39	-2.9
1,791,130	-		CCNA_01668	0.49	-0.8
1,791,132	-		CCNA_01668	0.49	+0.3
1,791,160	+		CCNA_01668	0.52	-2.0
1,791,160	+		CCNA_01668	0.52	-3.5
1,791,160	+		CCNA_01668	0.52	-2.6
1,791,160	+		CCNA_01668	0.52	-2.7
1,791,168	-		CCNA_01668	0.53	-0.9
1,791,202	+		CCNA_01668	0.57	-1.7
1,791,209	+		CCNA_01668	0.58	-2.6
1,791,217	-		CCNA_01668	0.59	+0.3
1,791,222	-		CCNA_01668	0.59	-2.8
1,791,272	+		CCNA_01668	0.65	-3.3
1,791,280	-		CCNA_01668	0.66	-0.5
1,791,290	+		CCNA_01668	0.67	-3.1
1,791,290	+		CCNA_01668	0.67	-0.3
1,791,355	+		CCNA_01668	0.75	-1.4
1,791,374	+		CCNA_01668	0.77	-0.3
1,791,382	-		CCNA_01668	0.78	+0.1
1,791,382	-		CCNA_01668	0.78	-1.0
1,791,407	-		CCNA_01668	0.81	-0.8
1,791,425	-				+2.1
1,791,468	+		CCNA_01668	0.88	-0.5
1,791,547	+				-0.9
1,791,555	-				+1.7
1,791,589	+				-1.5
1,791,602	+				+1.1
1,791,626	+				-1.5
1,791,626	+				-3.1
1,791,634	-				-0.9
1,791,672	+		CCNA_01669	0.11	-1.9
1,791,680	-		CCNA_01669	0.12	-1.6
1,791,720	+		CCNA_01669	0.17	-1.0
1,791,728	-		CCNA_01669	0.18	+0.1
1,791,729	-		CCNA_01669	0.18	-2.8
1,791,817	-		CCNA_01669	0.28	-1.0
1,791,819	+		CCNA_01669	0.28	-3.3
1,791,837	+		CCNA_01669	0.30	-3.1
1,791,845	-		CCNA_01669	0.31	-1.9
1,791,876	+		CCNA_01669	0.35	-2.1
1,791,927	+		CCNA_01669	0.41	-3.6
1,791,935	-		CCNA_01669	0.42	-1.1
1,791,942	-		CCNA_01669	0.43	-0.5
1,791,952	-		CCNA_01669	0.44	-2.2
1,791,954	+		CCNA_01669	0.44	-3.7
1,791,992	+		CCNA_01669	0.48	-3.3
1,792,136	+		CCNA_01669	0.65	-3.0
1,792,137	+		CCNA_01669	0.65	-1.1
1,792,144	-		CCNA_01669	0.66	-0.3
1,792,152	-		CCNA_01669	0.67	-2.3
1,792,184	+		CCNA_01669	0.71	-3.9
1,792,184	+		CCNA_01669	0.71	+0.1
1,792,184	+		CCNA_01669	0.71	-2.3
1,792,184	+		CCNA_01669	0.71	-2.7
1,792,184	+		CCNA_01669	0.71	-0.9
1,792,184	+		CCNA_01669	0.71	-2.1
1,792,187	-		CCNA_01669	0.71	-1.9
1,792,192	-		CCNA_01669	0.72	-1.1
1,792,192	-		CCNA_01669	0.72	-1.3
1,792,197	+		CCNA_01669	0.72	+0.1
1,792,199	+		CCNA_01669	0.73	-1.8
1,792,202	+		CCNA_01669	0.73	-1.5
1,792,222	-		CCNA_01669	0.75	-0.3
1,792,264	-		CCNA_01669	0.80	-2.1
1,792,268	+		CCNA_01669	0.81	-1.6
1,792,268	+		CCNA_01669	0.81	+0.5
1,792,268	+		CCNA_01669	0.81	-1.0
1,792,268	+		CCNA_01669	0.81	-0.7
1,792,268	+		CCNA_01669	0.81	-3.4
1,792,268	+		CCNA_01669	0.81	-3.3
1,792,268	+		CCNA_01669	0.81	-2.3
1,792,268	+		CCNA_01669	0.81	-0.1
1,792,276	-		CCNA_01669	0.82	-3.0
1,792,276	-		CCNA_01669	0.82	-2.8
1,792,276	-		CCNA_01669	0.82	-2.1
1,792,276	-		CCNA_01669	0.82	-2.4
1,792,308	+		CCNA_01669	0.85	-2.9
1,792,308	+		CCNA_01669	0.85	-3.1
1,792,351	+				-2.2
1,792,359	-				-0.7
1,792,402	+				-1.8
1,792,410	+				-1.9
1,792,446	+				-0.4
1,792,498	+				-2.2
1,792,503	+				-2.9
1,792,542	+				-0.7
1,792,555	-		CCNA_01670	0.10	-0.3
1,792,556	+		CCNA_01670	0.10	-2.7