Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00559

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00557 and CCNA_00558 overlap by 4 nucleotidesCCNA_00558 and CCNA_00559 are separated by 127 nucleotidesCCNA_00559 and CCNA_00560 are separated by 77 nucleotidesCCNA_00560 and CCNA_00561 overlap by 4 nucleotidesCCNA_00561 and CCNA_00562 overlap by 4 nucleotides CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799 _00557 CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461 _00558 CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 CCNA_00560: CCNA_00560 - phosphohistidine phosphatase SixA, at 575,815 to 576,327 _00560 CCNA_00561: CCNA_00561 - conserved hypothetical cytosolic protein, at 576,324 to 576,668 _00561 CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723 _00562 Position (kb) 574 575 576Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 573.595 kb on + strand, within CCNA_00557at 573.629 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.637 kb on + strand, within CCNA_00557at 573.645 kb on - strand, within CCNA_00557at 573.721 kb on - strand, within CCNA_00557at 573.738 kb on + strandat 573.740 kb on - strandat 573.761 kb on + strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.770 kb on + strandat 573.792 kb on + strandat 573.839 kb on - strandat 573.897 kb on + strand, within CCNA_00558at 573.912 kb on + strand, within CCNA_00558at 573.915 kb on - strand, within CCNA_00558at 573.969 kb on + strand, within CCNA_00558at 573.985 kb on - strand, within CCNA_00558at 573.990 kb on - strand, within CCNA_00558at 574.003 kb on - strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.040 kb on + strand, within CCNA_00558at 574.053 kb on - strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.093 kb on + strand, within CCNA_00558at 574.122 kb on - strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.246 kb on + strand, within CCNA_00558at 574.256 kb on + strand, within CCNA_00558at 574.259 kb on - strand, within CCNA_00558at 574.264 kb on - strand, within CCNA_00558at 574.297 kb on - strand, within CCNA_00558at 574.305 kb on - strand, within CCNA_00558at 574.339 kb on - strand, within CCNA_00558at 574.381 kb on - strand, within CCNA_00558at 574.420 kb on + strandat 574.446 kb on + strandat 574.447 kb on + strandat 574.447 kb on + strandat 574.454 kb on - strandat 574.501 kb on - strandat 574.501 kb on - strandat 574.510 kb on + strandat 574.567 kb on - strandat 574.587 kb on + strandat 574.759 kb on - strand, within CCNA_00559at 574.759 kb on - strand, within CCNA_00559at 574.773 kb on - strand, within CCNA_00559at 574.790 kb on - strand, within CCNA_00559at 574.795 kb on - strand, within CCNA_00559at 574.815 kb on - strand, within CCNA_00559at 574.818 kb on + strand, within CCNA_00559at 574.820 kb on + strand, within CCNA_00559at 574.828 kb on - strand, within CCNA_00559at 574.832 kb on + strand, within CCNA_00559at 574.892 kb on - strand, within CCNA_00559at 574.913 kb on + strand, within CCNA_00559at 574.925 kb on + strand, within CCNA_00559at 574.933 kb on - strand, within CCNA_00559at 574.956 kb on + strand, within CCNA_00559at 574.976 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 575.051 kb on - strand, within CCNA_00559at 575.080 kb on - strand, within CCNA_00559at 575.150 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strandat 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.196 kb on + strand, within CCNA_00559at 575.217 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.235 kb on - strand, within CCNA_00559at 575.240 kb on - strand, within CCNA_00559at 575.244 kb on + strand, within CCNA_00559at 575.245 kb on - strand, within CCNA_00559at 575.249 kb on + strand, within CCNA_00559at 575.250 kb on + strand, within CCNA_00559at 575.265 kb on - strand, within CCNA_00559at 575.305 kb on - strand, within CCNA_00559at 575.313 kb on + strand, within CCNA_00559at 575.328 kb on + strand, within CCNA_00559at 575.336 kb on - strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.362 kb on - strand, within CCNA_00559at 575.374 kb on + strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.384 kb on - strand, within CCNA_00559at 575.389 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.451 kb on - strand, within CCNA_00559at 575.499 kb on - strand, within CCNA_00559at 575.526 kb on + strand, within CCNA_00559at 575.546 kb on - strand, within CCNA_00559at 575.552 kb on - strand, within CCNA_00559at 575.561 kb on + strand, within CCNA_00559at 575.579 kb on - strand, within CCNA_00559at 575.584 kb on - strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.618 kb on + strand, within CCNA_00559at 575.621 kb on - strand, within CCNA_00559at 575.625 kb on - strandat 575.641 kb on - strandat 575.652 kb on + strandat 575.660 kb on - strandat 575.660 kb on - strandat 575.674 kb on - strandat 575.739 kb on - strandat 575.741 kb on - strandat 575.749 kb on - strandat 575.797 kb on - strandat 575.799 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.807 kb on - strandat 575.807 kb on - strandat 575.809 kb on - strandat 575.818 kb on + strandat 575.835 kb on - strandat 575.841 kb on + strandat 575.847 kb on + strandat 575.847 kb on + strandat 575.860 kb on + strandat 575.860 kb on + strandat 575.868 kb on - strand, within CCNA_00560at 575.868 kb on - strand, within CCNA_00560at 575.898 kb on + strand, within CCNA_00560at 575.900 kb on - strand, within CCNA_00560at 576.001 kb on + strand, within CCNA_00560at 576.027 kb on - strand, within CCNA_00560at 576.031 kb on - strand, within CCNA_00560at 576.048 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.065 kb on - strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.188 kb on - strand, within CCNA_00560at 576.191 kb on + strand, within CCNA_00560at 576.244 kb on + strand, within CCNA_00560at 576.263 kb on - strand, within CCNA_00560at 576.270 kb on - strand, within CCNA_00560at 576.288 kb on + strandat 576.288 kb on + strandat 576.340 kb on - strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.350 kb on - strandat 576.350 kb on - strandat 576.357 kb on + strandat 576.357 kb on + strandat 576.375 kb on + strand, within CCNA_00561at 576.375 kb on + strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.431 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.470 kb on + strand, within CCNA_00561at 576.478 kb on - strand, within CCNA_00561at 576.528 kb on + strand, within CCNA_00561at 576.536 kb on - strand, within CCNA_00561at 576.536 kb on - strandat 576.536 kb on - strand, within CCNA_00561at 576.580 kb on - strand, within CCNA_00561at 576.600 kb on - strand, within CCNA_00561at 576.615 kb on + strand, within CCNA_00561at 576.669 kb on + strandat 576.695 kb on + strandat 576.695 kb on + strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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573,595 + CCNA_00557 0.74 +1.5
573,629 - CCNA_00557 0.78 -0.2
573,635 - CCNA_00557 0.79 -0.7
573,635 - CCNA_00557 0.79 +0.8
573,637 + CCNA_00557 0.79 +1.1
573,645 - CCNA_00557 0.80 +0.0
573,721 - CCNA_00557 0.90 +0.4
573,738 + -0.2
573,740 - +0.9
573,761 + -1.3
573,769 - -0.2
573,769 - -0.3
573,769 - -2.7
573,770 + +0.7
573,792 + -1.4
573,839 - +0.2
573,897 + CCNA_00558 0.15 -1.3
573,912 + CCNA_00558 0.17 -2.7
573,915 - CCNA_00558 0.18 -4.5
573,969 + CCNA_00558 0.26 -0.3
573,985 - CCNA_00558 0.28 -3.2
573,990 - CCNA_00558 0.29 -3.5
574,003 - CCNA_00558 0.31 -2.3
574,007 + CCNA_00558 0.32 +1.3
574,007 + CCNA_00558 0.32 -2.6
574,015 - CCNA_00558 0.33 -3.4
574,015 - CCNA_00558 0.33 -0.6
574,015 - CCNA_00558 0.33 +0.5
574,015 - CCNA_00558 0.33 -2.1
574,015 - CCNA_00558 0.33 -3.2
574,039 + CCNA_00558 0.36 -1.0
574,039 + CCNA_00558 0.36 +0.0
574,040 + CCNA_00558 0.37 -0.6
574,053 - CCNA_00558 0.39 -2.0
574,078 + CCNA_00558 0.42 -1.6
574,078 + CCNA_00558 0.42 -3.0
574,078 + CCNA_00558 0.42 -1.5
574,078 + CCNA_00558 0.42 -1.9
574,078 + CCNA_00558 0.42 -1.7
574,086 - CCNA_00558 0.44 -1.9
574,086 - CCNA_00558 0.44 -3.5
574,086 - CCNA_00558 0.44 -1.6
574,086 - CCNA_00558 0.44 -3.0
574,086 - CCNA_00558 0.44 -1.2
574,093 + CCNA_00558 0.45 +1.8
574,122 - CCNA_00558 0.49 -1.9
574,196 + CCNA_00558 0.60 -2.6
574,204 - CCNA_00558 0.61 -1.7
574,204 - CCNA_00558 0.61 -0.5
574,204 - CCNA_00558 0.61 -1.3
574,204 - CCNA_00558 0.61 -3.1
574,204 - CCNA_00558 0.61 -2.7
574,246 + CCNA_00558 0.68 -2.1
574,256 + CCNA_00558 0.69 -2.5
574,259 - CCNA_00558 0.70 +0.4
574,264 - CCNA_00558 0.70 -2.7
574,297 - CCNA_00558 0.75 -1.7
574,305 - CCNA_00558 0.76 -1.9
574,339 - CCNA_00558 0.82 -2.9
574,381 - CCNA_00558 0.88 -2.7
574,420 + -2.1
574,446 + -1.0
574,447 + -3.3
574,447 + -2.0
574,454 - -1.9
574,501 - +1.1
574,501 - -0.1
574,510 + -1.9
574,567 - -0.5
574,587 + -1.6
574,759 - CCNA_00559 0.15 -2.8
574,759 - CCNA_00559 0.15 -3.1
574,773 - CCNA_00559 0.16 -4.5
574,790 - CCNA_00559 0.17 -4.3
574,795 - CCNA_00559 0.18 -2.4
574,815 - CCNA_00559 0.20 -4.2
574,818 + CCNA_00559 0.20 -1.6
574,820 + CCNA_00559 0.20 -1.5
574,828 - CCNA_00559 0.21 -0.9
574,832 + CCNA_00559 0.21 -0.5
574,892 - CCNA_00559 0.26 -1.2
574,913 + CCNA_00559 0.28 -1.4
574,925 + CCNA_00559 0.29 -0.3
574,933 - CCNA_00559 0.30 -0.5
574,956 + CCNA_00559 0.32 -2.1
574,976 + CCNA_00559 0.34 -1.9
574,977 + CCNA_00559 0.34 -1.2
574,977 + CCNA_00559 0.34 +0.0
575,051 - CCNA_00559 0.40 -2.9
575,080 - CCNA_00559 0.43 -2.1
575,150 + CCNA_00559 0.49 +0.2
575,174 + CCNA_00559 0.51 -1.7
575,174 + CCNA_00559 0.51 -2.6
575,174 + CCNA_00559 0.51 -3.2
575,174 + CCNA_00559 0.51 -2.7
575,174 + +1.2
575,174 + CCNA_00559 0.51 -0.9
575,174 + CCNA_00559 0.51 -2.0
575,174 + CCNA_00559 0.51 -3.2
575,182 - CCNA_00559 0.52 -3.6
575,182 - CCNA_00559 0.52 -0.5
575,182 - CCNA_00559 0.52 -1.9
575,182 - CCNA_00559 0.52 -2.3
575,182 - CCNA_00559 0.52 -2.7
575,182 - CCNA_00559 0.52 -4.2
575,182 - CCNA_00559 0.52 -3.9
575,182 - CCNA_00559 0.52 -3.6
575,196 + CCNA_00559 0.53 +0.0
575,217 - CCNA_00559 0.55 -3.8
575,222 - CCNA_00559 0.55 -2.9
575,222 - CCNA_00559 0.55 -0.5
575,222 - CCNA_00559 0.55 -4.0
575,235 - CCNA_00559 0.56 -1.6
575,240 - CCNA_00559 0.57 -3.9
575,244 + CCNA_00559 0.57 -1.2
575,245 - CCNA_00559 0.57 -1.1
575,249 + CCNA_00559 0.57 -1.2
575,250 + CCNA_00559 0.58 -1.9
575,265 - CCNA_00559 0.59 -2.6
575,305 - CCNA_00559 0.62 -3.9
575,313 + CCNA_00559 0.63 -3.4
575,328 + CCNA_00559 0.64 -0.2
575,336 - CCNA_00559 0.65 -3.2
575,354 + CCNA_00559 0.67 -1.4
575,354 + CCNA_00559 0.67 -0.6
575,362 - CCNA_00559 0.67 -2.6
575,374 + CCNA_00559 0.68 -1.9
575,382 - CCNA_00559 0.69 -2.0
575,382 - CCNA_00559 0.69 -3.4
575,384 - CCNA_00559 0.69 -1.8
575,389 - CCNA_00559 0.70 -3.3
575,410 - CCNA_00559 0.71 -3.2
575,410 - CCNA_00559 0.71 -0.2
575,410 - CCNA_00559 0.71 -1.7
575,451 - CCNA_00559 0.75 -3.2
575,499 - CCNA_00559 0.79 -3.9
575,526 + CCNA_00559 0.82 -0.3
575,546 - CCNA_00559 0.83 -4.0
575,552 - CCNA_00559 0.84 -0.8
575,561 + CCNA_00559 0.85 -1.6
575,579 - CCNA_00559 0.86 -3.0
575,584 - CCNA_00559 0.87 -3.9
575,586 + CCNA_00559 0.87 -0.9
575,586 + CCNA_00559 0.87 -0.5
575,586 + CCNA_00559 0.87 -1.8
575,586 + CCNA_00559 0.87 -2.8
575,586 + CCNA_00559 0.87 -3.7
575,586 + CCNA_00559 0.87 -1.4
575,586 + CCNA_00559 0.87 -1.1
575,586 + CCNA_00559 0.87 -2.0
575,586 + CCNA_00559 0.87 -1.7
575,586 + CCNA_00559 0.87 -1.6
575,594 - CCNA_00559 0.87 -3.1
575,594 - CCNA_00559 0.87 -4.2
575,594 - CCNA_00559 0.87 -1.4
575,594 - CCNA_00559 0.87 -4.8
575,594 - CCNA_00559 0.87 -4.6
575,594 - CCNA_00559 0.87 -3.1
575,594 - CCNA_00559 0.87 -2.1
575,594 - CCNA_00559 0.87 -3.9
575,594 - CCNA_00559 0.87 -2.3
575,618 + CCNA_00559 0.90 -2.3
575,621 - CCNA_00559 0.90 -2.3
575,625 - +1.8
575,641 - -3.6
575,652 + -0.5
575,660 - -3.6
575,660 - -1.7
575,674 - -2.7
575,739 - +0.1
575,741 - +0.4
575,749 - -2.6
575,797 - +0.8
575,799 + +1.0
575,801 + +0.7
575,801 + -0.6
575,801 + -0.0
575,801 + -0.6
575,801 + +0.6
575,801 + +0.6
575,807 - +1.4
575,807 - -1.0
575,809 - +3.0
575,818 + +0.6
575,835 - -0.4
575,841 + +4.8
575,847 + -1.4
575,847 + -0.6
575,860 + +4.2
575,860 + -2.7
575,868 - CCNA_00560 0.10 -0.2
575,868 - CCNA_00560 0.10 -1.0
575,898 + CCNA_00560 0.16 +0.2
575,900 - CCNA_00560 0.17 +1.1
576,001 + CCNA_00560 0.36 +0.6
576,027 - CCNA_00560 0.41 -1.3
576,031 - CCNA_00560 0.42 +1.8
576,048 + CCNA_00560 0.45 +1.6
576,057 + CCNA_00560 0.47 -0.5
576,057 + CCNA_00560 0.47 -0.3
576,057 + CCNA_00560 0.47 -0.6
576,057 + CCNA_00560 0.47 -0.5
576,065 - CCNA_00560 0.49 -1.5
576,175 + CCNA_00560 0.70 -1.8
576,175 + CCNA_00560 0.70 +0.0
576,188 - CCNA_00560 0.73 +1.3
576,191 + CCNA_00560 0.73 +1.8
576,244 + CCNA_00560 0.84 +1.7
576,263 - CCNA_00560 0.87 +0.2
576,270 - CCNA_00560 0.89 +1.8
576,288 + +0.3
576,288 + -2.4
576,340 - +0.4
576,342 + +1.4
576,342 + -0.2
576,342 + +0.4
576,342 + -0.8
576,350 - -2.6
576,350 - +1.1
576,357 + -0.4
576,357 + +0.5
576,375 + CCNA_00561 0.15 -0.6
576,375 + CCNA_00561 0.15 -0.2
576,383 - CCNA_00561 0.17 -3.3
576,383 - CCNA_00561 0.17 -0.5
576,383 - CCNA_00561 0.17 +1.9
576,383 - CCNA_00561 0.17 -0.5
576,431 - CCNA_00561 0.31 +1.2
576,455 - CCNA_00561 0.38 -1.3
576,455 - CCNA_00561 0.38 +1.6
576,470 + CCNA_00561 0.42 -0.2
576,478 - CCNA_00561 0.45 -0.2
576,528 + CCNA_00561 0.59 +1.4
576,536 - CCNA_00561 0.61 +0.3
576,536 - +1.8
576,536 - CCNA_00561 0.61 +0.3
576,580 - CCNA_00561 0.74 -1.2
576,600 - CCNA_00561 0.80 +1.0
576,615 + CCNA_00561 0.84 +1.3
576,669 + +0.5
576,695 + -2.0
576,695 + -3.6
576,703 - -0.5
576,703 - -0.8
576,703 - -1.3
576,727 - +0.2

Or see this region's nucleotide sequence