Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00557 and CCNA_00558 overlap by 4 nucleotides CCNA_00558 and CCNA_00559 are separated by 127 nucleotides CCNA_00559 and CCNA_00560 are separated by 77 nucleotides CCNA_00560 and CCNA_00561 overlap by 4 nucleotides CCNA_00561 and CCNA_00562 overlap by 4 nucleotides
CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799
_00557
CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461
_00558
CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737
_00559
CCNA_00560: CCNA_00560 - phosphohistidine phosphatase SixA, at 575,815 to 576,327
_00560
CCNA_00561: CCNA_00561 - conserved hypothetical cytosolic protein, at 576,324 to 576,668
_00561
CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723
_00562
Position (kb)
574
575
576 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 573.595 kb on + strand, within CCNA_00557 at 573.629 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.635 kb on - strand, within CCNA_00557 at 573.637 kb on + strand, within CCNA_00557 at 573.645 kb on - strand, within CCNA_00557 at 573.721 kb on - strand, within CCNA_00557 at 573.738 kb on + strand at 573.740 kb on - strand at 573.761 kb on + strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.769 kb on - strand at 573.770 kb on + strand at 573.792 kb on + strand at 573.839 kb on - strand at 573.897 kb on + strand, within CCNA_00558 at 573.912 kb on + strand, within CCNA_00558 at 573.915 kb on - strand, within CCNA_00558 at 573.969 kb on + strand, within CCNA_00558 at 573.985 kb on - strand, within CCNA_00558 at 573.990 kb on - strand, within CCNA_00558 at 574.003 kb on - strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.007 kb on + strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.015 kb on - strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.039 kb on + strand, within CCNA_00558 at 574.040 kb on + strand, within CCNA_00558 at 574.053 kb on - strand, within CCNA_00558 at 574.078 kb on + strand, within CCNA_00558 at 574.078 kb on + strand, within CCNA_00558 at 574.078 kb on + strand, within CCNA_00558 at 574.078 kb on + strand, within CCNA_00558 at 574.078 kb on + strand, within CCNA_00558 at 574.086 kb on - strand, within CCNA_00558 at 574.086 kb on - strand, within CCNA_00558 at 574.086 kb on - strand, within CCNA_00558 at 574.086 kb on - strand, within CCNA_00558 at 574.086 kb on - strand, within CCNA_00558 at 574.093 kb on + strand, within CCNA_00558 at 574.122 kb on - strand, within CCNA_00558 at 574.196 kb on + strand, within CCNA_00558 at 574.204 kb on - strand, within CCNA_00558 at 574.204 kb on - strand, within CCNA_00558 at 574.204 kb on - strand, within CCNA_00558 at 574.204 kb on - strand, within CCNA_00558 at 574.204 kb on - strand, within CCNA_00558 at 574.246 kb on + strand, within CCNA_00558 at 574.256 kb on + strand, within CCNA_00558 at 574.259 kb on - strand, within CCNA_00558 at 574.264 kb on - strand, within CCNA_00558 at 574.297 kb on - strand, within CCNA_00558 at 574.305 kb on - strand, within CCNA_00558 at 574.339 kb on - strand, within CCNA_00558 at 574.381 kb on - strand, within CCNA_00558 at 574.420 kb on + strand at 574.446 kb on + strand at 574.447 kb on + strand at 574.447 kb on + strand at 574.454 kb on - strand at 574.501 kb on - strand at 574.501 kb on - strand at 574.510 kb on + strand at 574.567 kb on - strand at 574.587 kb on + strand at 574.759 kb on - strand, within CCNA_00559 at 574.759 kb on - strand, within CCNA_00559 at 574.773 kb on - strand, within CCNA_00559 at 574.790 kb on - strand, within CCNA_00559 at 574.795 kb on - strand, within CCNA_00559 at 574.815 kb on - strand, within CCNA_00559 at 574.818 kb on + strand, within CCNA_00559 at 574.820 kb on + strand, within CCNA_00559 at 574.828 kb on - strand, within CCNA_00559 at 574.832 kb on + strand, within CCNA_00559 at 574.892 kb on - strand, within CCNA_00559 at 574.913 kb on + strand, within CCNA_00559 at 574.925 kb on + strand, within CCNA_00559 at 574.933 kb on - strand, within CCNA_00559 at 574.956 kb on + strand, within CCNA_00559 at 574.976 kb on + strand, within CCNA_00559 at 574.977 kb on + strand, within CCNA_00559 at 574.977 kb on + strand, within CCNA_00559 at 575.051 kb on - strand, within CCNA_00559 at 575.080 kb on - strand, within CCNA_00559 at 575.150 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.196 kb on + strand, within CCNA_00559 at 575.217 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.235 kb on - strand, within CCNA_00559 at 575.240 kb on - strand, within CCNA_00559 at 575.244 kb on + strand, within CCNA_00559 at 575.245 kb on - strand, within CCNA_00559 at 575.249 kb on + strand, within CCNA_00559 at 575.250 kb on + strand, within CCNA_00559 at 575.265 kb on - strand, within CCNA_00559 at 575.305 kb on - strand, within CCNA_00559 at 575.313 kb on + strand, within CCNA_00559 at 575.328 kb on + strand, within CCNA_00559 at 575.336 kb on - strand, within CCNA_00559 at 575.354 kb on + strand, within CCNA_00559 at 575.354 kb on + strand, within CCNA_00559 at 575.362 kb on - strand, within CCNA_00559 at 575.374 kb on + strand, within CCNA_00559 at 575.382 kb on - strand, within CCNA_00559 at 575.382 kb on - strand, within CCNA_00559 at 575.384 kb on - strand, within CCNA_00559 at 575.389 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.451 kb on - strand, within CCNA_00559 at 575.499 kb on - strand, within CCNA_00559 at 575.526 kb on + strand, within CCNA_00559 at 575.546 kb on - strand, within CCNA_00559 at 575.552 kb on - strand, within CCNA_00559 at 575.561 kb on + strand, within CCNA_00559 at 575.579 kb on - strand, within CCNA_00559 at 575.584 kb on - strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.618 kb on + strand, within CCNA_00559 at 575.621 kb on - strand, within CCNA_00559 at 575.625 kb on - strand at 575.641 kb on - strand at 575.652 kb on + strand at 575.660 kb on - strand at 575.660 kb on - strand at 575.674 kb on - strand at 575.739 kb on - strand at 575.741 kb on - strand at 575.749 kb on - strand at 575.797 kb on - strand at 575.799 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.807 kb on - strand at 575.807 kb on - strand at 575.809 kb on - strand at 575.818 kb on + strand at 575.835 kb on - strand at 575.841 kb on + strand at 575.847 kb on + strand at 575.847 kb on + strand at 575.860 kb on + strand at 575.860 kb on + strand at 575.868 kb on - strand, within CCNA_00560 at 575.868 kb on - strand, within CCNA_00560 at 575.898 kb on + strand, within CCNA_00560 at 575.900 kb on - strand, within CCNA_00560 at 576.001 kb on + strand, within CCNA_00560 at 576.027 kb on - strand, within CCNA_00560 at 576.031 kb on - strand, within CCNA_00560 at 576.048 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.065 kb on - strand, within CCNA_00560 at 576.175 kb on + strand, within CCNA_00560 at 576.175 kb on + strand, within CCNA_00560 at 576.188 kb on - strand, within CCNA_00560 at 576.191 kb on + strand, within CCNA_00560 at 576.244 kb on + strand, within CCNA_00560 at 576.263 kb on - strand, within CCNA_00560 at 576.270 kb on - strand, within CCNA_00560 at 576.288 kb on + strand at 576.288 kb on + strand at 576.340 kb on - strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.350 kb on - strand at 576.350 kb on - strand at 576.357 kb on + strand at 576.357 kb on + strand at 576.375 kb on + strand, within CCNA_00561 at 576.375 kb on + strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.431 kb on - strand, within CCNA_00561 at 576.455 kb on - strand, within CCNA_00561 at 576.455 kb on - strand, within CCNA_00561 at 576.470 kb on + strand, within CCNA_00561 at 576.478 kb on - strand, within CCNA_00561 at 576.528 kb on + strand, within CCNA_00561 at 576.536 kb on - strand, within CCNA_00561 at 576.536 kb on - strand at 576.536 kb on - strand, within CCNA_00561 at 576.580 kb on - strand, within CCNA_00561 at 576.600 kb on - strand, within CCNA_00561 at 576.615 kb on + strand, within CCNA_00561 at 576.669 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.703 kb on - strand at 576.703 kb on - strand at 576.703 kb on - strand at 576.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 573,595 + CCNA_00557 0.74 +1.5 573,629 - CCNA_00557 0.78 -0.2 573,635 - CCNA_00557 0.79 -0.7 573,635 - CCNA_00557 0.79 +0.8 573,637 + CCNA_00557 0.79 +1.1 573,645 - CCNA_00557 0.80 +0.0 573,721 - CCNA_00557 0.90 +0.4 573,738 + -0.2 573,740 - +0.9 573,761 + -1.3 573,769 - -0.2 573,769 - -0.3 573,769 - -2.7 573,770 + +0.7 573,792 + -1.4 573,839 - +0.2 573,897 + CCNA_00558 0.15 -1.3 573,912 + CCNA_00558 0.17 -2.7 573,915 - CCNA_00558 0.18 -4.5 573,969 + CCNA_00558 0.26 -0.3 573,985 - CCNA_00558 0.28 -3.2 573,990 - CCNA_00558 0.29 -3.5 574,003 - CCNA_00558 0.31 -2.3 574,007 + CCNA_00558 0.32 +1.3 574,007 + CCNA_00558 0.32 -2.6 574,015 - CCNA_00558 0.33 -3.4 574,015 - CCNA_00558 0.33 -0.6 574,015 - CCNA_00558 0.33 +0.5 574,015 - CCNA_00558 0.33 -2.1 574,015 - CCNA_00558 0.33 -3.2 574,039 + CCNA_00558 0.36 -1.0 574,039 + CCNA_00558 0.36 +0.0 574,040 + CCNA_00558 0.37 -0.6 574,053 - CCNA_00558 0.39 -2.0 574,078 + CCNA_00558 0.42 -1.6 574,078 + CCNA_00558 0.42 -3.0 574,078 + CCNA_00558 0.42 -1.5 574,078 + CCNA_00558 0.42 -1.9 574,078 + CCNA_00558 0.42 -1.7 574,086 - CCNA_00558 0.44 -1.9 574,086 - CCNA_00558 0.44 -3.5 574,086 - CCNA_00558 0.44 -1.6 574,086 - CCNA_00558 0.44 -3.0 574,086 - CCNA_00558 0.44 -1.2 574,093 + CCNA_00558 0.45 +1.8 574,122 - CCNA_00558 0.49 -1.9 574,196 + CCNA_00558 0.60 -2.6 574,204 - CCNA_00558 0.61 -1.7 574,204 - CCNA_00558 0.61 -0.5 574,204 - CCNA_00558 0.61 -1.3 574,204 - CCNA_00558 0.61 -3.1 574,204 - CCNA_00558 0.61 -2.7 574,246 + CCNA_00558 0.68 -2.1 574,256 + CCNA_00558 0.69 -2.5 574,259 - CCNA_00558 0.70 +0.4 574,264 - CCNA_00558 0.70 -2.7 574,297 - CCNA_00558 0.75 -1.7 574,305 - CCNA_00558 0.76 -1.9 574,339 - CCNA_00558 0.82 -2.9 574,381 - CCNA_00558 0.88 -2.7 574,420 + -2.1 574,446 + -1.0 574,447 + -3.3 574,447 + -2.0 574,454 - -1.9 574,501 - +1.1 574,501 - -0.1 574,510 + -1.9 574,567 - -0.5 574,587 + -1.6 574,759 - CCNA_00559 0.15 -2.8 574,759 - CCNA_00559 0.15 -3.1 574,773 - CCNA_00559 0.16 -4.5 574,790 - CCNA_00559 0.17 -4.3 574,795 - CCNA_00559 0.18 -2.4 574,815 - CCNA_00559 0.20 -4.2 574,818 + CCNA_00559 0.20 -1.6 574,820 + CCNA_00559 0.20 -1.5 574,828 - CCNA_00559 0.21 -0.9 574,832 + CCNA_00559 0.21 -0.5 574,892 - CCNA_00559 0.26 -1.2 574,913 + CCNA_00559 0.28 -1.4 574,925 + CCNA_00559 0.29 -0.3 574,933 - CCNA_00559 0.30 -0.5 574,956 + CCNA_00559 0.32 -2.1 574,976 + CCNA_00559 0.34 -1.9 574,977 + CCNA_00559 0.34 -1.2 574,977 + CCNA_00559 0.34 +0.0 575,051 - CCNA_00559 0.40 -2.9 575,080 - CCNA_00559 0.43 -2.1 575,150 + CCNA_00559 0.49 +0.2 575,174 + CCNA_00559 0.51 -1.7 575,174 + CCNA_00559 0.51 -2.6 575,174 + CCNA_00559 0.51 -3.2 575,174 + CCNA_00559 0.51 -2.7 575,174 + +1.2 575,174 + CCNA_00559 0.51 -0.9 575,174 + CCNA_00559 0.51 -2.0 575,174 + CCNA_00559 0.51 -3.2 575,182 - CCNA_00559 0.52 -3.6 575,182 - CCNA_00559 0.52 -0.5 575,182 - CCNA_00559 0.52 -1.9 575,182 - CCNA_00559 0.52 -2.3 575,182 - CCNA_00559 0.52 -2.7 575,182 - CCNA_00559 0.52 -4.2 575,182 - CCNA_00559 0.52 -3.9 575,182 - CCNA_00559 0.52 -3.6 575,196 + CCNA_00559 0.53 +0.0 575,217 - CCNA_00559 0.55 -3.8 575,222 - CCNA_00559 0.55 -2.9 575,222 - CCNA_00559 0.55 -0.5 575,222 - CCNA_00559 0.55 -4.0 575,235 - CCNA_00559 0.56 -1.6 575,240 - CCNA_00559 0.57 -3.9 575,244 + CCNA_00559 0.57 -1.2 575,245 - CCNA_00559 0.57 -1.1 575,249 + CCNA_00559 0.57 -1.2 575,250 + CCNA_00559 0.58 -1.9 575,265 - CCNA_00559 0.59 -2.6 575,305 - CCNA_00559 0.62 -3.9 575,313 + CCNA_00559 0.63 -3.4 575,328 + CCNA_00559 0.64 -0.2 575,336 - CCNA_00559 0.65 -3.2 575,354 + CCNA_00559 0.67 -1.4 575,354 + CCNA_00559 0.67 -0.6 575,362 - CCNA_00559 0.67 -2.6 575,374 + CCNA_00559 0.68 -1.9 575,382 - CCNA_00559 0.69 -2.0 575,382 - CCNA_00559 0.69 -3.4 575,384 - CCNA_00559 0.69 -1.8 575,389 - CCNA_00559 0.70 -3.3 575,410 - CCNA_00559 0.71 -3.2 575,410 - CCNA_00559 0.71 -0.2 575,410 - CCNA_00559 0.71 -1.7 575,451 - CCNA_00559 0.75 -3.2 575,499 - CCNA_00559 0.79 -3.9 575,526 + CCNA_00559 0.82 -0.3 575,546 - CCNA_00559 0.83 -4.0 575,552 - CCNA_00559 0.84 -0.8 575,561 + CCNA_00559 0.85 -1.6 575,579 - CCNA_00559 0.86 -3.0 575,584 - CCNA_00559 0.87 -3.9 575,586 + CCNA_00559 0.87 -0.9 575,586 + CCNA_00559 0.87 -0.5 575,586 + CCNA_00559 0.87 -1.8 575,586 + CCNA_00559 0.87 -2.8 575,586 + CCNA_00559 0.87 -3.7 575,586 + CCNA_00559 0.87 -1.4 575,586 + CCNA_00559 0.87 -1.1 575,586 + CCNA_00559 0.87 -2.0 575,586 + CCNA_00559 0.87 -1.7 575,586 + CCNA_00559 0.87 -1.6 575,594 - CCNA_00559 0.87 -3.1 575,594 - CCNA_00559 0.87 -4.2 575,594 - CCNA_00559 0.87 -1.4 575,594 - CCNA_00559 0.87 -4.8 575,594 - CCNA_00559 0.87 -4.6 575,594 - CCNA_00559 0.87 -3.1 575,594 - CCNA_00559 0.87 -2.1 575,594 - CCNA_00559 0.87 -3.9 575,594 - CCNA_00559 0.87 -2.3 575,618 + CCNA_00559 0.90 -2.3 575,621 - CCNA_00559 0.90 -2.3 575,625 - +1.8 575,641 - -3.6 575,652 + -0.5 575,660 - -3.6 575,660 - -1.7 575,674 - -2.7 575,739 - +0.1 575,741 - +0.4 575,749 - -2.6 575,797 - +0.8 575,799 + +1.0 575,801 + +0.7 575,801 + -0.6 575,801 + -0.0 575,801 + -0.6 575,801 + +0.6 575,801 + +0.6 575,807 - +1.4 575,807 - -1.0 575,809 - +3.0 575,818 + +0.6 575,835 - -0.4 575,841 + +4.8 575,847 + -1.4 575,847 + -0.6 575,860 + +4.2 575,860 + -2.7 575,868 - CCNA_00560 0.10 -0.2 575,868 - CCNA_00560 0.10 -1.0 575,898 + CCNA_00560 0.16 +0.2 575,900 - CCNA_00560 0.17 +1.1 576,001 + CCNA_00560 0.36 +0.6 576,027 - CCNA_00560 0.41 -1.3 576,031 - CCNA_00560 0.42 +1.8 576,048 + CCNA_00560 0.45 +1.6 576,057 + CCNA_00560 0.47 -0.5 576,057 + CCNA_00560 0.47 -0.3 576,057 + CCNA_00560 0.47 -0.6 576,057 + CCNA_00560 0.47 -0.5 576,065 - CCNA_00560 0.49 -1.5 576,175 + CCNA_00560 0.70 -1.8 576,175 + CCNA_00560 0.70 +0.0 576,188 - CCNA_00560 0.73 +1.3 576,191 + CCNA_00560 0.73 +1.8 576,244 + CCNA_00560 0.84 +1.7 576,263 - CCNA_00560 0.87 +0.2 576,270 - CCNA_00560 0.89 +1.8 576,288 + +0.3 576,288 + -2.4 576,340 - +0.4 576,342 + +1.4 576,342 + -0.2 576,342 + +0.4 576,342 + -0.8 576,350 - -2.6 576,350 - +1.1 576,357 + -0.4 576,357 + +0.5 576,375 + CCNA_00561 0.15 -0.6 576,375 + CCNA_00561 0.15 -0.2 576,383 - CCNA_00561 0.17 -3.3 576,383 - CCNA_00561 0.17 -0.5 576,383 - CCNA_00561 0.17 +1.9 576,383 - CCNA_00561 0.17 -0.5 576,431 - CCNA_00561 0.31 +1.2 576,455 - CCNA_00561 0.38 -1.3 576,455 - CCNA_00561 0.38 +1.6 576,470 + CCNA_00561 0.42 -0.2 576,478 - CCNA_00561 0.45 -0.2 576,528 + CCNA_00561 0.59 +1.4 576,536 - CCNA_00561 0.61 +0.3 576,536 - +1.8 576,536 - CCNA_00561 0.61 +0.3 576,580 - CCNA_00561 0.74 -1.2 576,600 - CCNA_00561 0.80 +1.0 576,615 + CCNA_00561 0.84 +1.3 576,669 + +0.5 576,695 + -2.0 576,695 + -3.6 576,703 - -0.5 576,703 - -0.8 576,703 - -1.3 576,727 - +0.2
Or see this region's nucleotide sequence