Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00526 and CCNA_00527 are separated by 130 nucleotides CCNA_00527 and CCNA_00528 are separated by 180 nucleotides CCNA_00528 and CCNA_00529 are separated by 68 nucleotides CCNA_00529 and CCNA_00530 are separated by 349 nucleotides
CCNA_00526: CCNA_00526 - BMFP membrane fusogenic protein, at 539,769 to 540,026
_00526
CCNA_00527: CCNA_00527 - hypothetical protein, at 540,157 to 540,663
_00527
CCNA_00528: CCNA_00528 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) <small>(from data)</small>, at 540,844 to 541,626
_00528
CCNA_00529: CCNA_00529 - hypothetical protein, at 541,695 to 542,231
_00529
CCNA_00530: CCNA_00530 - LSU ribosomal protein L10P, at 542,581 to 543,099
_00530
Position (kb) 540
541
542 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 539.904 kb on - strand, within CCNA_00526 at 540.045 kb on - strand at 540.066 kb on - strand at 540.082 kb on + strand at 540.090 kb on - strand at 540.091 kb on + strand at 540.091 kb on + strand at 540.091 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.116 kb on + strand at 540.124 kb on - strand at 540.124 kb on - strand at 540.124 kb on - strand at 540.143 kb on + strand at 540.179 kb on + strand at 540.186 kb on + strand at 540.203 kb on + strand at 540.203 kb on + strand at 540.203 kb on + strand at 540.245 kb on + strand, within CCNA_00527 at 540.253 kb on - strand, within CCNA_00527 at 540.253 kb on - strand, within CCNA_00527 at 540.263 kb on - strand, within CCNA_00527 at 540.268 kb on + strand, within CCNA_00527 at 540.335 kb on - strand, within CCNA_00527 at 540.343 kb on + strand, within CCNA_00527 at 540.346 kb on + strand, within CCNA_00527 at 540.349 kb on - strand, within CCNA_00527 at 540.349 kb on - strand, within CCNA_00527 at 540.363 kb on + strand, within CCNA_00527 at 540.398 kb on + strand, within CCNA_00527 at 540.406 kb on + strand, within CCNA_00527 at 540.406 kb on - strand, within CCNA_00527 at 540.450 kb on + strand, within CCNA_00527 at 540.467 kb on + strand, within CCNA_00527 at 540.486 kb on + strand, within CCNA_00527 at 540.487 kb on + strand, within CCNA_00527 at 540.488 kb on + strand, within CCNA_00527 at 540.488 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.498 kb on + strand, within CCNA_00527 at 540.511 kb on + strand, within CCNA_00527 at 540.519 kb on - strand, within CCNA_00527 at 540.522 kb on + strand, within CCNA_00527 at 540.530 kb on - strand, within CCNA_00527 at 540.588 kb on - strand, within CCNA_00527 at 540.609 kb on - strand, within CCNA_00527 at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.664 kb on + strand at 540.664 kb on + strand at 540.664 kb on + strand at 540.664 kb on + strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.665 kb on - strand at 540.672 kb on - strand at 540.718 kb on + strand at 540.718 kb on + strand at 540.751 kb on + strand at 540.751 kb on + strand at 540.751 kb on + strand at 540.751 kb on + strand at 540.751 kb on + strand at 540.751 kb on + strand at 540.754 kb on - strand at 540.759 kb on - strand at 540.759 kb on - strand at 540.759 kb on - strand at 540.759 kb on - strand at 540.776 kb on + strand at 540.820 kb on + strand at 540.827 kb on + strand at 540.827 kb on + strand at 540.879 kb on - strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.900 kb on - strand at 540.967 kb on + strand, within CCNA_00528 at 540.992 kb on - strand at 540.992 kb on - strand, within CCNA_00528 at 541.004 kb on - strand, within CCNA_00528 at 541.047 kb on + strand, within CCNA_00528 at 541.047 kb on + strand, within CCNA_00528 at 541.083 kb on - strand, within CCNA_00528 at 541.083 kb on - strand, within CCNA_00528 at 541.115 kb on + strand, within CCNA_00528 at 541.123 kb on - strand, within CCNA_00528 at 541.123 kb on - strand, within CCNA_00528 at 541.154 kb on - strand at 541.214 kb on - strand, within CCNA_00528 at 541.225 kb on - strand, within CCNA_00528 at 541.240 kb on + strand, within CCNA_00528 at 541.253 kb on + strand, within CCNA_00528 at 541.298 kb on + strand, within CCNA_00528 at 541.303 kb on + strand, within CCNA_00528 at 541.303 kb on - strand, within CCNA_00528 at 541.327 kb on + strand, within CCNA_00528 at 541.347 kb on - strand, within CCNA_00528 at 541.351 kb on + strand, within CCNA_00528 at 541.351 kb on + strand, within CCNA_00528 at 541.379 kb on - strand, within CCNA_00528 at 541.390 kb on + strand, within CCNA_00528 at 541.390 kb on + strand, within CCNA_00528 at 541.390 kb on + strand, within CCNA_00528 at 541.390 kb on + strand, within CCNA_00528 at 541.390 kb on + strand, within CCNA_00528 at 541.397 kb on + strand, within CCNA_00528 at 541.398 kb on - strand, within CCNA_00528 at 541.398 kb on - strand, within CCNA_00528 at 541.398 kb on - strand, within CCNA_00528 at 541.403 kb on + strand, within CCNA_00528 at 541.403 kb on + strand, within CCNA_00528 at 541.405 kb on - strand, within CCNA_00528 at 541.405 kb on - strand, within CCNA_00528 at 541.405 kb on - strand at 541.411 kb on - strand, within CCNA_00528 at 541.416 kb on - strand, within CCNA_00528 at 541.462 kb on + strand, within CCNA_00528 at 541.462 kb on + strand, within CCNA_00528 at 541.480 kb on - strand, within CCNA_00528 at 541.480 kb on - strand, within CCNA_00528 at 541.481 kb on + strand, within CCNA_00528 at 541.489 kb on - strand, within CCNA_00528 at 541.508 kb on - strand, within CCNA_00528 at 541.540 kb on + strand, within CCNA_00528 at 541.540 kb on + strand, within CCNA_00528 at 541.540 kb on + strand, within CCNA_00528 at 541.540 kb on + strand, within CCNA_00528 at 541.548 kb on - strand at 541.557 kb on - strand at 541.578 kb on - strand at 541.582 kb on + strand at 541.582 kb on + strand at 541.583 kb on - strand at 541.594 kb on + strand at 541.652 kb on + strand at 541.652 kb on + strand at 541.652 kb on + strand at 541.652 kb on + strand at 541.657 kb on + strand at 541.657 kb on + strand at 541.657 kb on + strand at 541.657 kb on + strand at 541.665 kb on - strand at 541.673 kb on + strand at 541.674 kb on + strand at 541.682 kb on - strand at 541.707 kb on + strand at 541.707 kb on + strand at 541.707 kb on + strand at 541.710 kb on - strand at 541.715 kb on - strand at 541.731 kb on + strand at 541.749 kb on + strand, within CCNA_00529 at 541.749 kb on + strand, within CCNA_00529 at 541.754 kb on + strand, within CCNA_00529 at 541.754 kb on + strand, within CCNA_00529 at 541.754 kb on + strand, within CCNA_00529 at 541.754 kb on + strand, within CCNA_00529 at 541.754 kb on + strand, within CCNA_00529 at 541.757 kb on - strand, within CCNA_00529 at 541.759 kb on + strand, within CCNA_00529 at 541.762 kb on - strand, within CCNA_00529 at 541.762 kb on - strand, within CCNA_00529 at 541.767 kb on - strand, within CCNA_00529 at 541.783 kb on - strand, within CCNA_00529 at 541.807 kb on + strand, within CCNA_00529 at 541.834 kb on - strand, within CCNA_00529 at 541.856 kb on + strand, within CCNA_00529 at 541.877 kb on + strand, within CCNA_00529 at 541.914 kb on + strand, within CCNA_00529 at 541.914 kb on + strand, within CCNA_00529 at 541.914 kb on + strand, within CCNA_00529 at 541.928 kb on + strand, within CCNA_00529 at 541.928 kb on + strand, within CCNA_00529 at 541.957 kb on - strand, within CCNA_00529 at 541.985 kb on + strand, within CCNA_00529 at 542.001 kb on - strand, within CCNA_00529 at 542.012 kb on - strand, within CCNA_00529 at 542.015 kb on - strand, within CCNA_00529 at 542.020 kb on - strand, within CCNA_00529 at 542.020 kb on - strand, within CCNA_00529 at 542.051 kb on + strand, within CCNA_00529 at 542.065 kb on + strand, within CCNA_00529 at 542.073 kb on - strand, within CCNA_00529 at 542.079 kb on + strand, within CCNA_00529 at 542.121 kb on + strand, within CCNA_00529 at 542.126 kb on + strand, within CCNA_00529 at 542.129 kb on - strand, within CCNA_00529 at 542.129 kb on - strand, within CCNA_00529 at 542.148 kb on + strand, within CCNA_00529 at 542.156 kb on - strand, within CCNA_00529 at 542.156 kb on - strand, within CCNA_00529 at 542.174 kb on + strand, within CCNA_00529 at 542.192 kb on + strand at 542.204 kb on + strand at 542.212 kb on - strand at 542.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 539,904 - CCNA_00526 0.52 +0.7 540,045 - -1.4 540,066 - +1.0 540,082 + -0.2 540,090 - +2.1 540,091 + +1.1 540,091 + +0.5 540,091 + +2.0 540,116 + -0.5 540,116 + +0.3 540,116 + -0.2 540,116 + -2.3 540,124 - +1.8 540,124 - +2.3 540,124 - +0.6 540,143 + +0.2 540,179 + -0.2 540,186 + -2.8 540,203 + +1.2 540,203 + -1.0 540,203 + +0.8 540,245 + CCNA_00527 0.17 +1.0 540,253 - CCNA_00527 0.19 -0.5 540,253 - CCNA_00527 0.19 -0.1 540,263 - CCNA_00527 0.21 -1.8 540,268 + CCNA_00527 0.22 +0.6 540,335 - CCNA_00527 0.35 -1.3 540,343 + CCNA_00527 0.37 +0.9 540,346 + CCNA_00527 0.37 -0.6 540,349 - CCNA_00527 0.38 +1.1 540,349 - CCNA_00527 0.38 +0.8 540,363 + CCNA_00527 0.41 +0.4 540,398 + CCNA_00527 0.48 +0.5 540,406 + CCNA_00527 0.49 -2.7 540,406 - CCNA_00527 0.49 +1.2 540,450 + CCNA_00527 0.58 +0.4 540,467 + CCNA_00527 0.61 +0.5 540,486 + CCNA_00527 0.65 +1.4 540,487 + CCNA_00527 0.65 +0.0 540,488 + CCNA_00527 0.65 -0.8 540,488 + CCNA_00527 0.65 -0.9 540,498 + CCNA_00527 0.67 -0.2 540,498 + CCNA_00527 0.67 -0.7 540,498 + CCNA_00527 0.67 -2.4 540,498 + CCNA_00527 0.67 -0.5 540,498 + CCNA_00527 0.67 -0.0 540,511 + CCNA_00527 0.70 +1.0 540,519 - CCNA_00527 0.71 +0.1 540,522 + CCNA_00527 0.72 +1.2 540,530 - CCNA_00527 0.74 +3.7 540,588 - CCNA_00527 0.85 -0.6 540,609 - CCNA_00527 0.89 +0.8 540,657 + +1.4 540,657 + -0.1 540,657 + +0.3 540,657 + -1.1 540,657 + -0.6 540,657 + -0.2 540,657 + +0.8 540,657 + +1.6 540,657 + +2.3 540,657 + -2.4 540,657 + +0.5 540,657 + -2.9 540,657 + +1.6 540,657 + +0.1 540,657 + -0.3 540,657 + -0.6 540,657 + -0.0 540,657 + -0.1 540,664 + -2.7 540,664 + -0.5 540,664 + +1.0 540,664 + -2.8 540,665 - -0.7 540,665 - -1.6 540,665 - -1.3 540,665 - -0.5 540,665 - -1.4 540,665 - +0.0 540,665 - -1.0 540,672 - +1.4 540,718 + +0.2 540,718 + -0.5 540,751 + -1.0 540,751 + -0.6 540,751 + -2.4 540,751 + +0.4 540,751 + +0.8 540,751 + -1.6 540,754 - +0.8 540,759 - -1.6 540,759 - -2.2 540,759 - -1.1 540,759 - -1.6 540,776 + -1.3 540,820 + +1.2 540,827 + -1.0 540,827 + +0.3 540,879 - -1.6 540,880 + -2.0 540,880 + -0.5 540,900 - -2.7 540,967 + CCNA_00528 0.16 -1.3 540,992 - +0.5 540,992 - CCNA_00528 0.19 -2.0 541,004 - CCNA_00528 0.20 -4.3 541,047 + CCNA_00528 0.26 -2.8 541,047 + CCNA_00528 0.26 -2.2 541,083 - CCNA_00528 0.31 -0.2 541,083 - CCNA_00528 0.31 -4.6 541,115 + CCNA_00528 0.35 -1.9 541,123 - CCNA_00528 0.36 -1.6 541,123 - CCNA_00528 0.36 -2.6 541,154 - +0.8 541,214 - CCNA_00528 0.47 -2.8 541,225 - CCNA_00528 0.49 -3.1 541,240 + CCNA_00528 0.51 -2.7 541,253 + CCNA_00528 0.52 -2.9 541,298 + CCNA_00528 0.58 -1.9 541,303 + CCNA_00528 0.59 -2.7 541,303 - CCNA_00528 0.59 -0.8 541,327 + CCNA_00528 0.62 -1.8 541,347 - CCNA_00528 0.64 -3.1 541,351 + CCNA_00528 0.65 -1.1 541,351 + CCNA_00528 0.65 -0.1 541,379 - CCNA_00528 0.68 -1.3 541,390 + CCNA_00528 0.70 +0.5 541,390 + CCNA_00528 0.70 -2.7 541,390 + CCNA_00528 0.70 -4.8 541,390 + CCNA_00528 0.70 -3.3 541,390 + CCNA_00528 0.70 -2.6 541,397 + CCNA_00528 0.71 -2.4 541,398 - CCNA_00528 0.71 -4.4 541,398 - CCNA_00528 0.71 -3.8 541,398 - CCNA_00528 0.71 -2.6 541,403 + CCNA_00528 0.71 -3.4 541,403 + CCNA_00528 0.71 -4.2 541,405 - CCNA_00528 0.72 -1.4 541,405 - CCNA_00528 0.72 -2.4 541,405 - +0.2 541,411 - CCNA_00528 0.72 +1.2 541,416 - CCNA_00528 0.73 -2.5 541,462 + CCNA_00528 0.79 -3.4 541,462 + CCNA_00528 0.79 -2.3 541,480 - CCNA_00528 0.81 -4.2 541,480 - CCNA_00528 0.81 -4.5 541,481 + CCNA_00528 0.81 -2.2 541,489 - CCNA_00528 0.82 -5.8 541,508 - CCNA_00528 0.85 -2.4 541,540 + CCNA_00528 0.89 -1.9 541,540 + CCNA_00528 0.89 -2.3 541,540 + CCNA_00528 0.89 -0.3 541,540 + CCNA_00528 0.89 -3.9 541,548 - -4.1 541,557 - -2.9 541,578 - -2.9 541,582 + -3.2 541,582 + -2.8 541,583 - -0.9 541,594 + -1.9 541,652 + +1.5 541,652 + -0.9 541,652 + -0.5 541,652 + +0.8 541,657 + +0.2 541,657 + -3.2 541,657 + -1.2 541,657 + +0.4 541,665 - -0.7 541,673 + +0.4 541,674 + -0.8 541,682 - -1.5 541,707 + -0.5 541,707 + +0.5 541,707 + +0.4 541,710 - -1.9 541,715 - +1.3 541,731 + -0.9 541,749 + CCNA_00529 0.10 +0.8 541,749 + CCNA_00529 0.10 +0.4 541,754 + CCNA_00529 0.11 -0.1 541,754 + CCNA_00529 0.11 -0.8 541,754 + CCNA_00529 0.11 -0.3 541,754 + CCNA_00529 0.11 -1.8 541,754 + CCNA_00529 0.11 -0.6 541,757 - CCNA_00529 0.12 -0.8 541,759 + CCNA_00529 0.12 +0.9 541,762 - CCNA_00529 0.12 +1.1 541,762 - CCNA_00529 0.12 -3.2 541,767 - CCNA_00529 0.13 +1.7 541,783 - CCNA_00529 0.16 -1.6 541,807 + CCNA_00529 0.21 +1.0 541,834 - CCNA_00529 0.26 -1.5 541,856 + CCNA_00529 0.30 +1.5 541,877 + CCNA_00529 0.34 +0.6 541,914 + CCNA_00529 0.41 +0.7 541,914 + CCNA_00529 0.41 +0.8 541,914 + CCNA_00529 0.41 +0.3 541,928 + CCNA_00529 0.43 +0.4 541,928 + CCNA_00529 0.43 +0.4 541,957 - CCNA_00529 0.49 -2.3 541,985 + CCNA_00529 0.54 +1.8 542,001 - CCNA_00529 0.57 -0.8 542,012 - CCNA_00529 0.59 +0.8 542,015 - CCNA_00529 0.60 +1.3 542,020 - CCNA_00529 0.61 +1.7 542,020 - CCNA_00529 0.61 +0.7 542,051 + CCNA_00529 0.66 +0.2 542,065 + CCNA_00529 0.69 +1.0 542,073 - CCNA_00529 0.70 -0.3 542,079 + CCNA_00529 0.72 +1.7 542,121 + CCNA_00529 0.79 +0.9 542,126 + CCNA_00529 0.80 -2.6 542,129 - CCNA_00529 0.81 -2.2 542,129 - CCNA_00529 0.81 -0.8 542,148 + CCNA_00529 0.84 +1.1 542,156 - CCNA_00529 0.86 +0.6 542,156 - CCNA_00529 0.86 +1.2 542,174 + CCNA_00529 0.89 +0.9 542,192 + -1.9 542,204 + +0.8 542,212 - -0.3 542,212 - -0.9
Or see this region's nucleotide sequence