Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00490 and CCNA_00491 are separated by 147 nucleotides CCNA_00491 and CCNA_00492 are separated by 195 nucleotides
CCNA_00490: CCNA_00490 - hypothetical protein, at 507,838 to 508,722
_00490
CCNA_00491: CCNA_00491 - GTP cyclohydrolase I, at 508,870 to 509,508
_00491
CCNA_00492: CCNA_00492 - cysteinyl-tRNA synthetase, at 509,704 to 511,095
_00492
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 507.888 kb on + strand at 507.888 kb on + strand at 507.896 kb on - strand at 507.950 kb on + strand, within CCNA_00490 at 507.950 kb on + strand, within CCNA_00490 at 507.958 kb on - strand, within CCNA_00490 at 507.960 kb on + strand, within CCNA_00490 at 507.960 kb on + strand, within CCNA_00490 at 507.960 kb on + strand, within CCNA_00490 at 507.960 kb on + strand, within CCNA_00490 at 507.960 kb on + strand, within CCNA_00490 at 507.968 kb on - strand, within CCNA_00490 at 507.968 kb on - strand, within CCNA_00490 at 507.968 kb on - strand, within CCNA_00490 at 507.983 kb on + strand, within CCNA_00490 at 507.987 kb on + strand, within CCNA_00490 at 508.007 kb on + strand, within CCNA_00490 at 508.010 kb on - strand, within CCNA_00490 at 508.015 kb on - strand, within CCNA_00490 at 508.017 kb on + strand, within CCNA_00490 at 508.017 kb on + strand, within CCNA_00490 at 508.017 kb on + strand, within CCNA_00490 at 508.017 kb on + strand, within CCNA_00490 at 508.017 kb on + strand, within CCNA_00490 at 508.025 kb on - strand, within CCNA_00490 at 508.025 kb on - strand, within CCNA_00490 at 508.025 kb on - strand, within CCNA_00490 at 508.025 kb on - strand, within CCNA_00490 at 508.025 kb on - strand, within CCNA_00490 at 508.045 kb on + strand, within CCNA_00490 at 508.110 kb on + strand, within CCNA_00490 at 508.160 kb on + strand, within CCNA_00490 at 508.160 kb on + strand, within CCNA_00490 at 508.167 kb on - strand, within CCNA_00490 at 508.168 kb on - strand, within CCNA_00490 at 508.168 kb on - strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.170 kb on + strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.178 kb on - strand, within CCNA_00490 at 508.206 kb on + strand, within CCNA_00490 at 508.206 kb on + strand, within CCNA_00490 at 508.214 kb on - strand, within CCNA_00490 at 508.214 kb on - strand, within CCNA_00490 at 508.246 kb on + strand, within CCNA_00490 at 508.247 kb on + strand, within CCNA_00490 at 508.247 kb on - strand, within CCNA_00490 at 508.252 kb on + strand, within CCNA_00490 at 508.257 kb on + strand, within CCNA_00490 at 508.271 kb on + strand, within CCNA_00490 at 508.271 kb on + strand, within CCNA_00490 at 508.292 kb on - strand, within CCNA_00490 at 508.292 kb on - strand, within CCNA_00490 at 508.296 kb on + strand, within CCNA_00490 at 508.326 kb on + strand, within CCNA_00490 at 508.331 kb on + strand, within CCNA_00490 at 508.334 kb on - strand, within CCNA_00490 at 508.334 kb on - strand, within CCNA_00490 at 508.336 kb on + strand, within CCNA_00490 at 508.336 kb on + strand, within CCNA_00490 at 508.341 kb on + strand, within CCNA_00490 at 508.341 kb on + strand, within CCNA_00490 at 508.349 kb on - strand, within CCNA_00490 at 508.351 kb on + strand, within CCNA_00490 at 508.351 kb on + strand, within CCNA_00490 at 508.351 kb on + strand, within CCNA_00490 at 508.378 kb on - strand, within CCNA_00490 at 508.380 kb on + strand, within CCNA_00490 at 508.383 kb on + strand, within CCNA_00490 at 508.383 kb on + strand, within CCNA_00490 at 508.408 kb on - strand, within CCNA_00490 at 508.429 kb on - strand, within CCNA_00490 at 508.440 kb on + strand, within CCNA_00490 at 508.457 kb on + strand, within CCNA_00490 at 508.457 kb on + strand, within CCNA_00490 at 508.457 kb on + strand, within CCNA_00490 at 508.462 kb on + strand, within CCNA_00490 at 508.463 kb on + strand, within CCNA_00490 at 508.465 kb on - strand, within CCNA_00490 at 508.465 kb on - strand, within CCNA_00490 at 508.465 kb on - strand, within CCNA_00490 at 508.476 kb on + strand, within CCNA_00490 at 508.484 kb on - strand, within CCNA_00490 at 508.484 kb on - strand, within CCNA_00490 at 508.499 kb on - strand, within CCNA_00490 at 508.499 kb on - strand, within CCNA_00490 at 508.499 kb on - strand, within CCNA_00490 at 508.501 kb on + strand, within CCNA_00490 at 508.513 kb on + strand, within CCNA_00490 at 508.544 kb on + strand, within CCNA_00490 at 508.561 kb on - strand, within CCNA_00490 at 508.562 kb on - strand, within CCNA_00490 at 508.563 kb on - strand, within CCNA_00490 at 508.563 kb on - strand, within CCNA_00490 at 508.563 kb on - strand, within CCNA_00490 at 508.563 kb on - strand, within CCNA_00490 at 508.565 kb on + strand, within CCNA_00490 at 508.565 kb on + strand, within CCNA_00490 at 508.565 kb on + strand, within CCNA_00490 at 508.568 kb on - strand, within CCNA_00490 at 508.573 kb on - strand, within CCNA_00490 at 508.607 kb on - strand, within CCNA_00490 at 508.640 kb on + strand at 508.657 kb on - strand at 508.672 kb on + strand at 508.677 kb on + strand at 508.677 kb on + strand at 508.677 kb on + strand at 508.677 kb on + strand at 508.677 kb on + strand at 508.680 kb on - strand at 508.680 kb on - strand at 508.680 kb on - strand at 508.685 kb on - strand at 508.685 kb on - strand at 508.685 kb on - strand at 508.685 kb on - strand at 508.687 kb on - strand at 508.712 kb on - strand at 508.717 kb on + strand at 508.717 kb on + strand at 508.724 kb on - strand at 508.725 kb on - strand at 508.729 kb on + strand at 508.729 kb on + strand at 508.729 kb on + strand at 508.737 kb on - strand at 508.737 kb on - strand at 508.737 kb on - strand at 508.762 kb on - strand at 508.771 kb on + strand at 508.771 kb on + strand at 508.771 kb on + strand at 508.771 kb on + strand at 508.779 kb on - strand at 508.779 kb on - strand at 508.779 kb on - strand at 508.791 kb on - strand at 508.791 kb on - strand at 508.798 kb on - strand at 508.808 kb on + strand at 508.816 kb on - strand at 508.831 kb on - strand at 508.834 kb on + strand at 508.842 kb on - strand at 508.867 kb on - strand at 508.879 kb on + strand at 509.557 kb on + strand at 509.652 kb on - strand at 509.652 kb on - strand at 509.655 kb on - strand at 509.668 kb on + strand at 509.668 kb on + strand at 509.668 kb on + strand at 509.676 kb on + strand at 509.676 kb on + strand at 509.709 kb on - strand at 509.709 kb on - strand at 509.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 507,888 + +0.9 507,888 + +2.2 507,896 - +0.8 507,950 + CCNA_00490 0.13 -0.7 507,950 + CCNA_00490 0.13 +0.2 507,958 - CCNA_00490 0.14 -0.2 507,960 + CCNA_00490 0.14 -0.7 507,960 + CCNA_00490 0.14 +0.7 507,960 + CCNA_00490 0.14 -0.9 507,960 + CCNA_00490 0.14 -1.0 507,960 + CCNA_00490 0.14 +0.0 507,968 - CCNA_00490 0.15 +0.1 507,968 - CCNA_00490 0.15 -2.5 507,968 - CCNA_00490 0.15 -1.1 507,983 + CCNA_00490 0.16 -1.2 507,987 + CCNA_00490 0.17 +1.8 508,007 + CCNA_00490 0.19 +1.8 508,010 - CCNA_00490 0.19 +0.3 508,015 - CCNA_00490 0.20 +2.1 508,017 + CCNA_00490 0.20 +0.3 508,017 + CCNA_00490 0.20 +3.2 508,017 + CCNA_00490 0.20 -0.9 508,017 + CCNA_00490 0.20 -0.9 508,017 + CCNA_00490 0.20 -1.8 508,025 - CCNA_00490 0.21 -2.0 508,025 - CCNA_00490 0.21 +1.5 508,025 - CCNA_00490 0.21 +0.5 508,025 - CCNA_00490 0.21 -1.7 508,025 - CCNA_00490 0.21 -0.5 508,045 + CCNA_00490 0.23 +2.2 508,110 + CCNA_00490 0.31 -3.2 508,160 + CCNA_00490 0.36 -0.2 508,160 + CCNA_00490 0.36 -1.4 508,167 - CCNA_00490 0.37 -0.7 508,168 - CCNA_00490 0.37 -0.5 508,168 - CCNA_00490 0.37 +2.1 508,170 + CCNA_00490 0.38 -2.0 508,170 + CCNA_00490 0.38 +1.0 508,170 + CCNA_00490 0.38 +1.7 508,170 + CCNA_00490 0.38 +0.5 508,170 + CCNA_00490 0.38 +0.1 508,170 + CCNA_00490 0.38 +0.9 508,170 + CCNA_00490 0.38 -0.3 508,170 + CCNA_00490 0.38 -0.8 508,170 + CCNA_00490 0.38 +0.7 508,170 + CCNA_00490 0.38 -0.2 508,170 + CCNA_00490 0.38 -1.6 508,170 + CCNA_00490 0.38 -2.5 508,178 - CCNA_00490 0.38 +1.5 508,178 - CCNA_00490 0.38 -0.3 508,178 - CCNA_00490 0.38 +0.8 508,178 - CCNA_00490 0.38 -2.1 508,178 - CCNA_00490 0.38 +1.6 508,178 - CCNA_00490 0.38 -1.7 508,178 - CCNA_00490 0.38 -1.6 508,178 - CCNA_00490 0.38 -0.2 508,178 - CCNA_00490 0.38 -0.6 508,178 - CCNA_00490 0.38 -0.3 508,178 - CCNA_00490 0.38 -1.3 508,206 + CCNA_00490 0.42 +1.7 508,206 + CCNA_00490 0.42 -1.4 508,214 - CCNA_00490 0.42 +0.4 508,214 - CCNA_00490 0.42 +0.0 508,246 + CCNA_00490 0.46 -2.4 508,247 + CCNA_00490 0.46 +1.6 508,247 - CCNA_00490 0.46 -0.7 508,252 + CCNA_00490 0.47 +2.2 508,257 + CCNA_00490 0.47 -0.2 508,271 + CCNA_00490 0.49 +1.1 508,271 + CCNA_00490 0.49 +0.4 508,292 - CCNA_00490 0.51 -1.2 508,292 - CCNA_00490 0.51 +0.5 508,296 + CCNA_00490 0.52 -0.7 508,326 + CCNA_00490 0.55 +1.3 508,331 + CCNA_00490 0.56 +0.7 508,334 - CCNA_00490 0.56 -1.0 508,334 - CCNA_00490 0.56 -2.3 508,336 + CCNA_00490 0.56 -1.8 508,336 + CCNA_00490 0.56 -1.8 508,341 + CCNA_00490 0.57 +1.2 508,341 + CCNA_00490 0.57 +2.7 508,349 - CCNA_00490 0.58 -1.2 508,351 + CCNA_00490 0.58 +0.8 508,351 + CCNA_00490 0.58 +0.1 508,351 + CCNA_00490 0.58 +0.8 508,378 - CCNA_00490 0.61 +0.0 508,380 + CCNA_00490 0.61 -0.5 508,383 + CCNA_00490 0.62 +1.2 508,383 + CCNA_00490 0.62 +2.4 508,408 - CCNA_00490 0.64 -1.2 508,429 - CCNA_00490 0.67 -0.3 508,440 + CCNA_00490 0.68 +0.1 508,457 + CCNA_00490 0.70 -2.0 508,457 + CCNA_00490 0.70 +1.7 508,457 + CCNA_00490 0.70 +0.2 508,462 + CCNA_00490 0.71 +0.0 508,463 + CCNA_00490 0.71 +2.8 508,465 - CCNA_00490 0.71 -1.7 508,465 - CCNA_00490 0.71 +0.0 508,465 - CCNA_00490 0.71 -2.7 508,476 + CCNA_00490 0.72 -2.2 508,484 - CCNA_00490 0.73 -0.9 508,484 - CCNA_00490 0.73 -2.8 508,499 - CCNA_00490 0.75 +2.3 508,499 - CCNA_00490 0.75 -0.9 508,499 - CCNA_00490 0.75 +1.8 508,501 + CCNA_00490 0.75 +0.7 508,513 + CCNA_00490 0.76 +2.7 508,544 + CCNA_00490 0.80 -2.4 508,561 - CCNA_00490 0.82 -1.0 508,562 - CCNA_00490 0.82 -0.2 508,563 - CCNA_00490 0.82 -3.0 508,563 - CCNA_00490 0.82 -2.2 508,563 - CCNA_00490 0.82 -2.5 508,563 - CCNA_00490 0.82 -1.3 508,565 + CCNA_00490 0.82 -0.1 508,565 + CCNA_00490 0.82 +1.8 508,565 + CCNA_00490 0.82 +2.4 508,568 - CCNA_00490 0.82 +1.1 508,573 - CCNA_00490 0.83 +0.9 508,607 - CCNA_00490 0.87 +1.1 508,640 + +0.1 508,657 - -1.5 508,672 + +0.8 508,677 + -2.0 508,677 + +0.0 508,677 + -0.2 508,677 + +0.7 508,677 + -0.3 508,680 - +3.2 508,680 - -0.8 508,680 - +1.5 508,685 - -0.6 508,685 - +0.3 508,685 - +0.5 508,685 - -0.6 508,687 - -1.6 508,712 - -1.7 508,717 + +1.5 508,717 + -1.0 508,724 - +1.8 508,725 - -0.2 508,729 + +0.5 508,729 + +0.6 508,729 + -1.6 508,737 - -1.1 508,737 - +0.8 508,737 - +0.3 508,762 - +1.8 508,771 + -0.6 508,771 + -0.2 508,771 + +1.3 508,771 + -2.9 508,779 - +1.2 508,779 - +4.4 508,779 - -0.6 508,791 - +0.8 508,791 - -0.3 508,798 - +0.4 508,808 + -0.1 508,816 - -0.4 508,831 - +2.8 508,834 + -0.1 508,842 - +0.9 508,867 - +0.0 508,879 + -0.5 509,557 + +1.0 509,652 - -0.3 509,652 - +0.8 509,655 - -0.2 509,668 + -0.7 509,668 + +0.3 509,668 + -0.0 509,676 + -0.2 509,676 + +1.4 509,709 - -0.5 509,709 - +1.0 509,709 - -1.1
Or see this region's nucleotide sequence