Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00292 and CCNA_00293 overlap by 8 nucleotides CCNA_00293 and CCNA_00294 are separated by 59 nucleotides CCNA_00294 and CCNA_00295 are separated by 25 nucleotides
CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462
_00292
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634
_00294
CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352
_00295
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 306.471 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292 at 306.998 kb on + strand, within CCNA_00292 at 307.414 kb on - strand at 307.441 kb on - strand at 307.451 kb on - strand at 307.547 kb on + strand at 307.735 kb on + strand at 307.871 kb on + strand, within CCNA_00293 at 307.984 kb on + strand at 308.038 kb on + strand, within CCNA_00293 at 308.704 kb on - strand at 308.750 kb on + strand at 308.786 kb on - strand at 308.802 kb on - strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.806 kb on + strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.814 kb on - strand at 308.929 kb on + strand, within CCNA_00294 at 309.555 kb on + strand at 309.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 306,471 + CCNA_00292 0.31 +3.2 306,476 + CCNA_00292 0.31 -0.3 306,476 + CCNA_00292 0.31 +3.9 306,998 + CCNA_00292 0.68 +0.8 307,414 - +2.9 307,441 - +3.4 307,451 - +3.6 307,547 + +1.1 307,735 + +5.2 307,871 + CCNA_00293 0.32 -0.2 307,984 + +2.8 308,038 + CCNA_00293 0.45 +2.8 308,704 - +3.5 308,750 + +0.4 308,786 - +4.0 308,802 - +0.1 308,806 + +0.9 308,806 + +0.9 308,806 + -1.4 308,806 + +0.7 308,806 + -1.7 308,806 + -0.0 308,806 + +1.0 308,806 + +0.7 308,806 + +0.8 308,806 + +0.6 308,806 + +0.1 308,814 - +1.3 308,814 - +1.7 308,814 - -2.0 308,814 - -1.4 308,814 - +2.4 308,814 - -0.5 308,814 - -1.5 308,814 - -1.3 308,929 + CCNA_00294 0.14 +1.7 309,555 + +2.5 309,633 + -0.6
Or see this region's nucleotide sequence