Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09450

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09445 and AO353_09450 are separated by 28 nucleotidesAO353_09450 and AO353_09455 are separated by 32 nucleotides AO353_09445: AO353_09445 - type VI secretion protein, at 2,075,596 to 2,077,071 _09445 AO353_09450: AO353_09450 - type VI secretion protein, at 2,077,100 to 2,077,603 _09450 AO353_09455: AO353_09455 - type VI secretion protein ImpA, at 2,077,636 to 2,079,192 _09455 Position (kb) 2077 2078Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2076.260 kb on + strand, within AO353_09445at 2076.260 kb on + strand, within AO353_09445at 2076.260 kb on + strand, within AO353_09445at 2076.260 kb on + strand, within AO353_09445at 2076.260 kb on + strand, within AO353_09445at 2076.260 kb on + strand, within AO353_09445at 2076.261 kb on - strand, within AO353_09445at 2076.261 kb on - strand, within AO353_09445at 2076.261 kb on - strand, within AO353_09445at 2076.261 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.294 kb on - strand, within AO353_09445at 2076.370 kb on - strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.371 kb on + strand, within AO353_09445at 2076.372 kb on - strand, within AO353_09445at 2076.372 kb on - strand, within AO353_09445at 2076.372 kb on - strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.545 kb on + strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.546 kb on - strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.587 kb on + strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.588 kb on - strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.644 kb on + strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.645 kb on - strand, within AO353_09445at 2076.656 kb on + strand, within AO353_09445at 2076.656 kb on + strand, within AO353_09445at 2076.656 kb on + strand, within AO353_09445at 2076.656 kb on + strand, within AO353_09445at 2076.656 kb on + strand, within AO353_09445at 2076.657 kb on - strand, within AO353_09445at 2076.657 kb on - strand, within AO353_09445at 2076.657 kb on - strand, within AO353_09445at 2076.968 kb on + strandat 2076.968 kb on + strandat 2076.969 kb on - strandat 2076.969 kb on - strandat 2076.969 kb on - strandat 2077.025 kb on + strandat 2077.025 kb on + strandat 2077.025 kb on + strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.026 kb on - strandat 2077.071 kb on + strandat 2077.071 kb on + strandat 2077.071 kb on + strandat 2077.071 kb on + strandat 2077.071 kb on + strandat 2077.071 kb on + strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.072 kb on - strandat 2077.409 kb on + strand, within AO353_09450at 2077.410 kb on - strand, within AO353_09450at 2077.410 kb on - strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.485 kb on + strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.486 kb on - strand, within AO353_09450at 2077.503 kb on - strand, within AO353_09450at 2077.638 kb on - strandat 2077.679 kb on + strandat 2077.737 kb on + strandat 2077.737 kb on + strandat 2077.737 kb on + strandat 2077.737 kb on + strandat 2077.737 kb on + strandat 2077.738 kb on - strandat 2077.801 kb on + strand, within AO353_09455at 2077.801 kb on + strand, within AO353_09455at 2077.801 kb on + strand, within AO353_09455at 2077.802 kb on - strand, within AO353_09455at 2077.802 kb on - strand, within AO353_09455at 2077.802 kb on - strand, within AO353_09455at 2077.802 kb on - strand, within AO353_09455at 2077.844 kb on + strand, within AO353_09455at 2077.844 kb on + strand, within AO353_09455at 2077.845 kb on - strand, within AO353_09455at 2077.845 kb on - strand, within AO353_09455at 2077.845 kb on - strand, within AO353_09455at 2078.127 kb on - strand, within AO353_09455at 2078.174 kb on + strand, within AO353_09455at 2078.174 kb on + strand, within AO353_09455at 2078.174 kb on + strand, within AO353_09455

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,076,260 + AO353_09445 0.45 +0.6
2,076,260 + AO353_09445 0.45 -0.2
2,076,260 + AO353_09445 0.45 +0.0
2,076,260 + AO353_09445 0.45 -1.4
2,076,260 + AO353_09445 0.45 -0.6
2,076,260 + AO353_09445 0.45 +0.3
2,076,261 - AO353_09445 0.45 +0.2
2,076,261 - AO353_09445 0.45 +0.4
2,076,261 - AO353_09445 0.45 +0.1
2,076,261 - AO353_09445 0.45 -0.3
2,076,294 - AO353_09445 0.47 +2.1
2,076,294 - AO353_09445 0.47 +1.2
2,076,294 - AO353_09445 0.47 -0.5
2,076,294 - AO353_09445 0.47 +1.3
2,076,294 - AO353_09445 0.47 +0.6
2,076,294 - AO353_09445 0.47 -0.9
2,076,370 - AO353_09445 0.52 -1.6
2,076,371 + AO353_09445 0.53 -0.4
2,076,371 + AO353_09445 0.53 -1.1
2,076,371 + AO353_09445 0.53 -0.4
2,076,371 + AO353_09445 0.53 -0.1
2,076,371 + AO353_09445 0.53 -1.4
2,076,371 + AO353_09445 0.53 +0.8
2,076,371 + AO353_09445 0.53 -0.8
2,076,372 - AO353_09445 0.53 -0.2
2,076,372 - AO353_09445 0.53 +1.2
2,076,372 - AO353_09445 0.53 -1.3
2,076,545 + AO353_09445 0.64 -1.6
2,076,545 + AO353_09445 0.64 +1.0
2,076,545 + AO353_09445 0.64 -0.2
2,076,545 + AO353_09445 0.64 +0.2
2,076,545 + AO353_09445 0.64 -0.0
2,076,545 + AO353_09445 0.64 +1.2
2,076,545 + AO353_09445 0.64 -0.2
2,076,546 - AO353_09445 0.64 -0.4
2,076,546 - AO353_09445 0.64 -1.2
2,076,546 - AO353_09445 0.64 +0.3
2,076,546 - AO353_09445 0.64 -0.0
2,076,546 - AO353_09445 0.64 +1.0
2,076,546 - AO353_09445 0.64 -0.4
2,076,546 - AO353_09445 0.64 -0.4
2,076,587 + AO353_09445 0.67 +2.9
2,076,587 + AO353_09445 0.67 -1.4
2,076,587 + AO353_09445 0.67 +0.6
2,076,587 + AO353_09445 0.67 +0.8
2,076,587 + AO353_09445 0.67 +0.3
2,076,587 + AO353_09445 0.67 -0.4
2,076,587 + AO353_09445 0.67 -1.0
2,076,588 - AO353_09445 0.67 -0.2
2,076,588 - AO353_09445 0.67 -0.8
2,076,588 - AO353_09445 0.67 +1.4
2,076,588 - AO353_09445 0.67 -0.3
2,076,588 - AO353_09445 0.67 -0.2
2,076,588 - AO353_09445 0.67 +0.2
2,076,588 - AO353_09445 0.67 -0.1
2,076,644 + AO353_09445 0.71 -1.1
2,076,644 + AO353_09445 0.71 +1.8
2,076,644 + AO353_09445 0.71 -0.0
2,076,644 + AO353_09445 0.71 -0.5
2,076,644 + AO353_09445 0.71 +1.6
2,076,644 + AO353_09445 0.71 -1.7
2,076,644 + AO353_09445 0.71 -0.1
2,076,644 + AO353_09445 0.71 +0.8
2,076,644 + AO353_09445 0.71 -0.5
2,076,644 + AO353_09445 0.71 +1.3
2,076,644 + AO353_09445 0.71 +0.2
2,076,644 + AO353_09445 0.71 +0.2
2,076,644 + AO353_09445 0.71 +2.1
2,076,645 - AO353_09445 0.71 -1.7
2,076,645 - AO353_09445 0.71 +2.6
2,076,645 - AO353_09445 0.71 +0.7
2,076,645 - AO353_09445 0.71 +0.4
2,076,645 - AO353_09445 0.71 +1.0
2,076,645 - AO353_09445 0.71 +1.8
2,076,645 - AO353_09445 0.71 -0.7
2,076,645 - AO353_09445 0.71 -1.9
2,076,656 + AO353_09445 0.72 +0.9
2,076,656 + AO353_09445 0.72 +1.3
2,076,656 + AO353_09445 0.72 +0.5
2,076,656 + AO353_09445 0.72 -0.6
2,076,656 + AO353_09445 0.72 +1.3
2,076,657 - AO353_09445 0.72 +0.5
2,076,657 - AO353_09445 0.72 -0.7
2,076,657 - AO353_09445 0.72 -0.8
2,076,968 + -0.5
2,076,968 + -0.9
2,076,969 - -1.1
2,076,969 - +0.3
2,076,969 - +0.0
2,077,025 + -0.1
2,077,025 + -1.8
2,077,025 + -0.7
2,077,026 - +0.5
2,077,026 - +1.2
2,077,026 - +0.2
2,077,026 - -1.1
2,077,026 - +1.1
2,077,026 - +1.2
2,077,026 - -1.0
2,077,071 + -1.5
2,077,071 + -0.0
2,077,071 + -2.6
2,077,071 + +3.1
2,077,071 + -0.6
2,077,071 + -0.9
2,077,072 - -1.1
2,077,072 - -0.7
2,077,072 - +0.8
2,077,072 - -1.4
2,077,072 - +1.2
2,077,072 - +0.5
2,077,072 - +0.2
2,077,072 - +0.2
2,077,409 + AO353_09450 0.61 -0.7
2,077,410 - AO353_09450 0.62 +0.0
2,077,410 - AO353_09450 0.62 -2.0
2,077,485 + AO353_09450 0.76 -0.7
2,077,485 + AO353_09450 0.76 -1.8
2,077,485 + AO353_09450 0.76 -0.4
2,077,485 + AO353_09450 0.76 +0.3
2,077,485 + AO353_09450 0.76 -0.8
2,077,485 + AO353_09450 0.76 -0.0
2,077,486 - AO353_09450 0.77 -0.9
2,077,486 - AO353_09450 0.77 +0.4
2,077,486 - AO353_09450 0.77 -0.8
2,077,486 - AO353_09450 0.77 -1.3
2,077,486 - AO353_09450 0.77 -2.7
2,077,486 - AO353_09450 0.77 -0.3
2,077,486 - AO353_09450 0.77 +0.6
2,077,503 - AO353_09450 0.80 +0.2
2,077,638 - +0.6
2,077,679 + +0.0
2,077,737 + +1.7
2,077,737 + -0.4
2,077,737 + +1.1
2,077,737 + -0.8
2,077,737 + -0.7
2,077,738 - -0.2
2,077,801 + AO353_09455 0.11 +0.8
2,077,801 + AO353_09455 0.11 +0.4
2,077,801 + AO353_09455 0.11 +0.9
2,077,802 - AO353_09455 0.11 -0.4
2,077,802 - AO353_09455 0.11 +0.2
2,077,802 - AO353_09455 0.11 +0.3
2,077,802 - AO353_09455 0.11 +0.3
2,077,844 + AO353_09455 0.13 +1.3
2,077,844 + AO353_09455 0.13 +0.7
2,077,845 - AO353_09455 0.13 -0.3
2,077,845 - AO353_09455 0.13 -0.1
2,077,845 - AO353_09455 0.13 -0.1
2,078,127 - AO353_09455 0.32 -0.2
2,078,174 + AO353_09455 0.35 -0.8
2,078,174 + AO353_09455 0.35 -0.3
2,078,174 + AO353_09455 0.35 -1.6

Or see this region's nucleotide sequence