Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09445 and AO353_09450 are separated by 28 nucleotides AO353_09450 and AO353_09455 are separated by 32 nucleotides
AO353_09445: AO353_09445 - type VI secretion protein, at 2,075,596 to 2,077,071
_09445
AO353_09450: AO353_09450 - type VI secretion protein, at 2,077,100 to 2,077,603
_09450
AO353_09455: AO353_09455 - type VI secretion protein ImpA, at 2,077,636 to 2,079,192
_09455
Position (kb)
2077
2078 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2076.260 kb on + strand, within AO353_09445 at 2076.260 kb on + strand, within AO353_09445 at 2076.260 kb on + strand, within AO353_09445 at 2076.260 kb on + strand, within AO353_09445 at 2076.260 kb on + strand, within AO353_09445 at 2076.260 kb on + strand, within AO353_09445 at 2076.261 kb on - strand, within AO353_09445 at 2076.261 kb on - strand, within AO353_09445 at 2076.261 kb on - strand, within AO353_09445 at 2076.261 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.294 kb on - strand, within AO353_09445 at 2076.370 kb on - strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.371 kb on + strand, within AO353_09445 at 2076.372 kb on - strand, within AO353_09445 at 2076.372 kb on - strand, within AO353_09445 at 2076.372 kb on - strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.545 kb on + strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.546 kb on - strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.587 kb on + strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.588 kb on - strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.644 kb on + strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.645 kb on - strand, within AO353_09445 at 2076.656 kb on + strand, within AO353_09445 at 2076.656 kb on + strand, within AO353_09445 at 2076.656 kb on + strand, within AO353_09445 at 2076.656 kb on + strand, within AO353_09445 at 2076.656 kb on + strand, within AO353_09445 at 2076.657 kb on - strand, within AO353_09445 at 2076.657 kb on - strand, within AO353_09445 at 2076.657 kb on - strand, within AO353_09445 at 2076.968 kb on + strand at 2076.968 kb on + strand at 2076.969 kb on - strand at 2076.969 kb on - strand at 2076.969 kb on - strand at 2077.025 kb on + strand at 2077.025 kb on + strand at 2077.025 kb on + strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.026 kb on - strand at 2077.071 kb on + strand at 2077.071 kb on + strand at 2077.071 kb on + strand at 2077.071 kb on + strand at 2077.071 kb on + strand at 2077.071 kb on + strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.072 kb on - strand at 2077.409 kb on + strand, within AO353_09450 at 2077.410 kb on - strand, within AO353_09450 at 2077.410 kb on - strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.485 kb on + strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.486 kb on - strand, within AO353_09450 at 2077.503 kb on - strand, within AO353_09450 at 2077.638 kb on - strand at 2077.679 kb on + strand at 2077.737 kb on + strand at 2077.737 kb on + strand at 2077.737 kb on + strand at 2077.737 kb on + strand at 2077.737 kb on + strand at 2077.738 kb on - strand at 2077.801 kb on + strand, within AO353_09455 at 2077.801 kb on + strand, within AO353_09455 at 2077.801 kb on + strand, within AO353_09455 at 2077.802 kb on - strand, within AO353_09455 at 2077.802 kb on - strand, within AO353_09455 at 2077.802 kb on - strand, within AO353_09455 at 2077.802 kb on - strand, within AO353_09455 at 2077.844 kb on + strand, within AO353_09455 at 2077.844 kb on + strand, within AO353_09455 at 2077.845 kb on - strand, within AO353_09455 at 2077.845 kb on - strand, within AO353_09455 at 2077.845 kb on - strand, within AO353_09455 at 2078.127 kb on - strand, within AO353_09455 at 2078.174 kb on + strand, within AO353_09455 at 2078.174 kb on + strand, within AO353_09455 at 2078.174 kb on + strand, within AO353_09455
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,076,260 + AO353_09445 0.45 +0.6 2,076,260 + AO353_09445 0.45 -0.2 2,076,260 + AO353_09445 0.45 +0.0 2,076,260 + AO353_09445 0.45 -1.4 2,076,260 + AO353_09445 0.45 -0.6 2,076,260 + AO353_09445 0.45 +0.3 2,076,261 - AO353_09445 0.45 +0.2 2,076,261 - AO353_09445 0.45 +0.4 2,076,261 - AO353_09445 0.45 +0.1 2,076,261 - AO353_09445 0.45 -0.3 2,076,294 - AO353_09445 0.47 +2.1 2,076,294 - AO353_09445 0.47 +1.2 2,076,294 - AO353_09445 0.47 -0.5 2,076,294 - AO353_09445 0.47 +1.3 2,076,294 - AO353_09445 0.47 +0.6 2,076,294 - AO353_09445 0.47 -0.9 2,076,370 - AO353_09445 0.52 -1.6 2,076,371 + AO353_09445 0.53 -0.4 2,076,371 + AO353_09445 0.53 -1.1 2,076,371 + AO353_09445 0.53 -0.4 2,076,371 + AO353_09445 0.53 -0.1 2,076,371 + AO353_09445 0.53 -1.4 2,076,371 + AO353_09445 0.53 +0.8 2,076,371 + AO353_09445 0.53 -0.8 2,076,372 - AO353_09445 0.53 -0.2 2,076,372 - AO353_09445 0.53 +1.2 2,076,372 - AO353_09445 0.53 -1.3 2,076,545 + AO353_09445 0.64 -1.6 2,076,545 + AO353_09445 0.64 +1.0 2,076,545 + AO353_09445 0.64 -0.2 2,076,545 + AO353_09445 0.64 +0.2 2,076,545 + AO353_09445 0.64 -0.0 2,076,545 + AO353_09445 0.64 +1.2 2,076,545 + AO353_09445 0.64 -0.2 2,076,546 - AO353_09445 0.64 -0.4 2,076,546 - AO353_09445 0.64 -1.2 2,076,546 - AO353_09445 0.64 +0.3 2,076,546 - AO353_09445 0.64 -0.0 2,076,546 - AO353_09445 0.64 +1.0 2,076,546 - AO353_09445 0.64 -0.4 2,076,546 - AO353_09445 0.64 -0.4 2,076,587 + AO353_09445 0.67 +2.9 2,076,587 + AO353_09445 0.67 -1.4 2,076,587 + AO353_09445 0.67 +0.6 2,076,587 + AO353_09445 0.67 +0.8 2,076,587 + AO353_09445 0.67 +0.3 2,076,587 + AO353_09445 0.67 -0.4 2,076,587 + AO353_09445 0.67 -1.0 2,076,588 - AO353_09445 0.67 -0.2 2,076,588 - AO353_09445 0.67 -0.8 2,076,588 - AO353_09445 0.67 +1.4 2,076,588 - AO353_09445 0.67 -0.3 2,076,588 - AO353_09445 0.67 -0.2 2,076,588 - AO353_09445 0.67 +0.2 2,076,588 - AO353_09445 0.67 -0.1 2,076,644 + AO353_09445 0.71 -1.1 2,076,644 + AO353_09445 0.71 +1.8 2,076,644 + AO353_09445 0.71 -0.0 2,076,644 + AO353_09445 0.71 -0.5 2,076,644 + AO353_09445 0.71 +1.6 2,076,644 + AO353_09445 0.71 -1.7 2,076,644 + AO353_09445 0.71 -0.1 2,076,644 + AO353_09445 0.71 +0.8 2,076,644 + AO353_09445 0.71 -0.5 2,076,644 + AO353_09445 0.71 +1.3 2,076,644 + AO353_09445 0.71 +0.2 2,076,644 + AO353_09445 0.71 +0.2 2,076,644 + AO353_09445 0.71 +2.1 2,076,645 - AO353_09445 0.71 -1.7 2,076,645 - AO353_09445 0.71 +2.6 2,076,645 - AO353_09445 0.71 +0.7 2,076,645 - AO353_09445 0.71 +0.4 2,076,645 - AO353_09445 0.71 +1.0 2,076,645 - AO353_09445 0.71 +1.8 2,076,645 - AO353_09445 0.71 -0.7 2,076,645 - AO353_09445 0.71 -1.9 2,076,656 + AO353_09445 0.72 +0.9 2,076,656 + AO353_09445 0.72 +1.3 2,076,656 + AO353_09445 0.72 +0.5 2,076,656 + AO353_09445 0.72 -0.6 2,076,656 + AO353_09445 0.72 +1.3 2,076,657 - AO353_09445 0.72 +0.5 2,076,657 - AO353_09445 0.72 -0.7 2,076,657 - AO353_09445 0.72 -0.8 2,076,968 + -0.5 2,076,968 + -0.9 2,076,969 - -1.1 2,076,969 - +0.3 2,076,969 - +0.0 2,077,025 + -0.1 2,077,025 + -1.8 2,077,025 + -0.7 2,077,026 - +0.5 2,077,026 - +1.2 2,077,026 - +0.2 2,077,026 - -1.1 2,077,026 - +1.1 2,077,026 - +1.2 2,077,026 - -1.0 2,077,071 + -1.5 2,077,071 + -0.0 2,077,071 + -2.6 2,077,071 + +3.1 2,077,071 + -0.6 2,077,071 + -0.9 2,077,072 - -1.1 2,077,072 - -0.7 2,077,072 - +0.8 2,077,072 - -1.4 2,077,072 - +1.2 2,077,072 - +0.5 2,077,072 - +0.2 2,077,072 - +0.2 2,077,409 + AO353_09450 0.61 -0.7 2,077,410 - AO353_09450 0.62 +0.0 2,077,410 - AO353_09450 0.62 -2.0 2,077,485 + AO353_09450 0.76 -0.7 2,077,485 + AO353_09450 0.76 -1.8 2,077,485 + AO353_09450 0.76 -0.4 2,077,485 + AO353_09450 0.76 +0.3 2,077,485 + AO353_09450 0.76 -0.8 2,077,485 + AO353_09450 0.76 -0.0 2,077,486 - AO353_09450 0.77 -0.9 2,077,486 - AO353_09450 0.77 +0.4 2,077,486 - AO353_09450 0.77 -0.8 2,077,486 - AO353_09450 0.77 -1.3 2,077,486 - AO353_09450 0.77 -2.7 2,077,486 - AO353_09450 0.77 -0.3 2,077,486 - AO353_09450 0.77 +0.6 2,077,503 - AO353_09450 0.80 +0.2 2,077,638 - +0.6 2,077,679 + +0.0 2,077,737 + +1.7 2,077,737 + -0.4 2,077,737 + +1.1 2,077,737 + -0.8 2,077,737 + -0.7 2,077,738 - -0.2 2,077,801 + AO353_09455 0.11 +0.8 2,077,801 + AO353_09455 0.11 +0.4 2,077,801 + AO353_09455 0.11 +0.9 2,077,802 - AO353_09455 0.11 -0.4 2,077,802 - AO353_09455 0.11 +0.2 2,077,802 - AO353_09455 0.11 +0.3 2,077,802 - AO353_09455 0.11 +0.3 2,077,844 + AO353_09455 0.13 +1.3 2,077,844 + AO353_09455 0.13 +0.7 2,077,845 - AO353_09455 0.13 -0.3 2,077,845 - AO353_09455 0.13 -0.1 2,077,845 - AO353_09455 0.13 -0.1 2,078,127 - AO353_09455 0.32 -0.2 2,078,174 + AO353_09455 0.35 -0.8 2,078,174 + AO353_09455 0.35 -0.3 2,078,174 + AO353_09455 0.35 -1.6
Or see this region's nucleotide sequence