Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06380

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_06375 and AO353_06380 are separated by 259 nucleotidesAO353_06380 and AO353_06385 overlap by 8 nucleotidesAO353_06385 and AO353_06390 are separated by 5 nucleotides AO353_06375: AO353_06375 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 1,421,460 to 1,422,794 _06375 AO353_06380: AO353_06380 - ATP-binding protein, at 1,423,054 to 1,424,073 _06380 AO353_06385: AO353_06385 - rRNA maturation factor, at 1,424,066 to 1,424,560 _06385 AO353_06390: AO353_06390 - magnesium transporter, at 1,424,566 to 1,425,405 _06390 Position (kb) 1423 1424 1425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1422.159 kb on - strand, within AO353_06375at 1422.223 kb on + strand, within AO353_06375at 1422.223 kb on + strand, within AO353_06375at 1422.224 kb on - strand, within AO353_06375at 1422.315 kb on + strand, within AO353_06375at 1422.315 kb on + strand, within AO353_06375at 1422.315 kb on + strand, within AO353_06375at 1422.315 kb on + strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.316 kb on - strand, within AO353_06375at 1422.378 kb on - strand, within AO353_06375at 1422.460 kb on - strand, within AO353_06375at 1422.678 kb on - strandat 1422.688 kb on + strandat 1422.688 kb on + strandat 1422.689 kb on - strandat 1422.689 kb on - strandat 1422.766 kb on + strandat 1422.792 kb on + strandat 1422.793 kb on - strandat 1422.793 kb on - strandat 1422.793 kb on - strandat 1422.874 kb on + strandat 1422.875 kb on - strandat 1422.891 kb on + strandat 1422.979 kb on + strandat 1422.979 kb on + strandat 1422.979 kb on + strandat 1423.020 kb on + strandat 1423.020 kb on + strandat 1423.067 kb on + strandat 1423.420 kb on + strand, within AO353_06380at 1423.420 kb on + strand, within AO353_06380at 1423.420 kb on + strand, within AO353_06380at 1423.420 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.486 kb on + strand, within AO353_06380at 1423.550 kb on + strand, within AO353_06380at 1423.636 kb on + strand, within AO353_06380at 1423.636 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.720 kb on + strand, within AO353_06380at 1423.935 kb on + strand, within AO353_06380at 1423.935 kb on + strand, within AO353_06380at 1423.996 kb on + strandat 1424.539 kb on + strandat 1424.539 kb on + strandat 1424.558 kb on + strandat 1424.565 kb on + strandat 1424.753 kb on + strand, within AO353_06390at 1424.753 kb on + strand, within AO353_06390at 1424.753 kb on + strand, within AO353_06390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
1,422,159 - AO353_06375 0.52 +0.8
1,422,223 + AO353_06375 0.57 +1.1
1,422,223 + AO353_06375 0.57 +0.2
1,422,224 - AO353_06375 0.57 +1.7
1,422,315 + AO353_06375 0.64 -1.3
1,422,315 + AO353_06375 0.64 -1.1
1,422,315 + AO353_06375 0.64 +0.1
1,422,315 + AO353_06375 0.64 -0.7
1,422,316 - AO353_06375 0.64 -1.5
1,422,316 - AO353_06375 0.64 -0.1
1,422,316 - AO353_06375 0.64 +0.3
1,422,316 - AO353_06375 0.64 +0.9
1,422,316 - AO353_06375 0.64 -0.2
1,422,316 - AO353_06375 0.64 +0.5
1,422,316 - AO353_06375 0.64 -1.1
1,422,316 - AO353_06375 0.64 +0.2
1,422,316 - AO353_06375 0.64 -0.0
1,422,316 - AO353_06375 0.64 -0.5
1,422,316 - AO353_06375 0.64 +1.2
1,422,378 - AO353_06375 0.69 -0.5
1,422,460 - AO353_06375 0.75 -0.9
1,422,678 - +0.1
1,422,688 + +0.5
1,422,688 + +0.5
1,422,689 - +2.1
1,422,689 - +0.7
1,422,766 + -0.5
1,422,792 + -0.5
1,422,793 - +1.3
1,422,793 - +1.5
1,422,793 - -0.2
1,422,874 + -2.0
1,422,875 - -1.1
1,422,891 + +0.5
1,422,979 + -3.1
1,422,979 + -1.5
1,422,979 + -2.9
1,423,020 + +1.3
1,423,020 + -2.3
1,423,067 + -0.9
1,423,420 + AO353_06380 0.36 -1.0
1,423,420 + AO353_06380 0.36 +0.1
1,423,420 + AO353_06380 0.36 +0.2
1,423,420 + AO353_06380 0.36 -1.1
1,423,486 + AO353_06380 0.42 +1.8
1,423,486 + AO353_06380 0.42 -1.5
1,423,486 + AO353_06380 0.42 +0.3
1,423,486 + AO353_06380 0.42 +1.7
1,423,486 + AO353_06380 0.42 -0.9
1,423,486 + AO353_06380 0.42 +0.4
1,423,486 + AO353_06380 0.42 -0.5
1,423,486 + AO353_06380 0.42 +0.6
1,423,486 + AO353_06380 0.42 +0.6
1,423,550 + AO353_06380 0.49 -1.9
1,423,636 + AO353_06380 0.57 +0.3
1,423,636 + AO353_06380 0.57 -1.6
1,423,720 + AO353_06380 0.65 -2.1
1,423,720 + AO353_06380 0.65 -1.5
1,423,720 + AO353_06380 0.65 -0.5
1,423,720 + AO353_06380 0.65 -2.9
1,423,720 + AO353_06380 0.65 -1.8
1,423,720 + AO353_06380 0.65 -0.1
1,423,720 + AO353_06380 0.65 -1.6
1,423,935 + AO353_06380 0.86 -3.2
1,423,935 + AO353_06380 0.86 -0.0
1,423,996 + -0.9
1,424,539 + -0.3
1,424,539 + -1.7
1,424,558 + +0.2
1,424,565 + +0.2
1,424,753 + AO353_06390 0.22 +0.4
1,424,753 + AO353_06390 0.22 +0.5
1,424,753 + AO353_06390 0.22 +1.3

Or see this region's nucleotide sequence