Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00665

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00655 and AO353_00660 are separated by 79 nucleotidesAO353_00660 and AO353_00665 are separated by 78 nucleotidesAO353_00665 and AO353_00670 are separated by 120 nucleotides AO353_00655: AO353_00655 - coproporphyrinogen III oxidase, at 138,696 to 140,078 _00655 AO353_00660: AO353_00660 - transcriptional regulator, at 140,158 to 140,892 _00660 AO353_00665: AO353_00665 - adenine phosphoribosyltransferase, at 140,971 to 141,519 _00665 AO353_00670: AO353_00670 - acyl-CoA dehydrogenase, at 141,640 to 142,788 _00670 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2at 140.034 kb on + strandat 140.035 kb on - strandat 140.072 kb on - strandat 140.077 kb on - strandat 140.121 kb on + strandat 140.121 kb on + strandat 140.121 kb on + strandat 140.122 kb on - strandat 140.128 kb on + strandat 140.128 kb on + strandat 140.128 kb on + strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.129 kb on - strandat 140.152 kb on + strandat 140.153 kb on - strandat 140.749 kb on + strand, within AO353_00660at 140.749 kb on + strandat 140.749 kb on + strand, within AO353_00660at 140.749 kb on + strand, within AO353_00660at 140.749 kb on + strand, within AO353_00660at 140.749 kb on + strand, within AO353_00660at 140.749 kb on + strand, within AO353_00660at 140.750 kb on - strand, within AO353_00660at 140.750 kb on - strand, within AO353_00660at 140.750 kb on - strand, within AO353_00660at 140.750 kb on - strand, within AO353_00660at 140.932 kb on + strandat 140.932 kb on + strandat 140.933 kb on - strandat 140.933 kb on - strandat 140.933 kb on - strandat 140.934 kb on + strandat 140.934 kb on + strandat 140.934 kb on + strandat 140.934 kb on + strandat 140.934 kb on + strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.935 kb on - strandat 140.949 kb on - strandat 141.115 kb on + strand, within AO353_00665at 141.115 kb on + strand, within AO353_00665at 141.245 kb on + strand, within AO353_00665at 141.245 kb on + strand, within AO353_00665at 141.245 kb on + strand, within AO353_00665at 141.246 kb on - strand, within AO353_00665at 141.246 kb on - strand, within AO353_00665at 141.246 kb on - strand, within AO353_00665at 141.427 kb on - strand, within AO353_00665at 141.427 kb on - strand, within AO353_00665at 141.517 kb on + strandat 141.517 kb on + strandat 141.518 kb on - strandat 141.518 kb on - strandat 141.518 kb on - strandat 141.518 kb on - strandat 141.518 kb on - strandat 141.518 kb on - strandat 141.583 kb on + strandat 141.752 kb on + strandat 141.753 kb on - strandat 141.753 kb on - strandat 141.753 kb on - strandat 142.069 kb on - strand, within AO353_00670at 142.278 kb on + strand, within AO353_00670at 142.278 kb on + strand, within AO353_00670at 142.279 kb on - strand, within AO353_00670at 142.281 kb on - strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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140,034 + +1.0
140,035 - -1.0
140,072 - +0.1
140,077 - +0.8
140,121 + -1.0
140,121 + -2.2
140,121 + -0.4
140,122 - +0.8
140,128 + -0.1
140,128 + +0.0
140,128 + +0.9
140,129 - +1.4
140,129 - -1.1
140,129 - +0.7
140,129 - -1.5
140,129 - +0.0
140,129 - -0.2
140,129 - +1.4
140,129 - +0.4
140,129 - +0.1
140,129 - -1.4
140,129 - -0.4
140,129 - -1.4
140,152 + +0.8
140,153 - +0.2
140,749 + AO353_00660 0.80 +0.7
140,749 + +0.0
140,749 + AO353_00660 0.80 -1.5
140,749 + AO353_00660 0.80 +0.2
140,749 + AO353_00660 0.80 -0.1
140,749 + AO353_00660 0.80 +2.1
140,749 + AO353_00660 0.80 +0.2
140,750 - AO353_00660 0.81 +1.0
140,750 - AO353_00660 0.81 -1.6
140,750 - AO353_00660 0.81 -0.6
140,750 - AO353_00660 0.81 +0.8
140,932 + +0.4
140,932 + -1.4
140,933 - -1.9
140,933 - -0.7
140,933 - -1.5
140,934 + -1.0
140,934 + -0.5
140,934 + -0.2
140,934 + -0.4
140,934 + -1.4
140,935 - -0.3
140,935 - +0.2
140,935 - -1.0
140,935 - +0.4
140,935 - +0.4
140,935 - +0.2
140,935 - +0.1
140,949 - -0.6
141,115 + AO353_00665 0.26 -0.4
141,115 + AO353_00665 0.26 -1.5
141,245 + AO353_00665 0.50 -1.6
141,245 + AO353_00665 0.50 -0.2
141,245 + AO353_00665 0.50 -1.4
141,246 - AO353_00665 0.50 +0.0
141,246 - AO353_00665 0.50 -1.1
141,246 - AO353_00665 0.50 -0.3
141,427 - AO353_00665 0.83 -0.9
141,427 - AO353_00665 0.83 -0.1
141,517 + +0.6
141,517 + +0.0
141,518 - -0.1
141,518 - -1.1
141,518 - +0.2
141,518 - +1.8
141,518 - +0.6
141,518 - +1.1
141,583 + -0.1
141,752 + -1.6
141,753 - -0.6
141,753 - +0.4
141,753 - -1.9
142,069 - AO353_00670 0.37 -0.7
142,278 + AO353_00670 0.56 -0.4
142,278 + AO353_00670 0.56 -0.2
142,279 - AO353_00670 0.56 -0.4
142,281 - AO353_00670 0.56 +0.5
142,337 + AO353_00670 0.61 -0.8
142,337 + AO353_00670 0.61 +0.0
142,337 + AO353_00670 0.61 +0.2
142,338 - AO353_00670 0.61 -1.2
142,338 - AO353_00670 0.61 -0.6
142,338 - AO353_00670 0.61 -0.2

Or see this region's nucleotide sequence