Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19570 and ABZR86_RS19575 are separated by 114 nucleotides ABZR86_RS19575 and ABZR86_RS19580 are separated by 188 nucleotides ABZR86_RS19580 and ABZR86_RS19585 are separated by 156 nucleotides ABZR86_RS19585 and ABZR86_RS19590 are separated by 84 nucleotides
ABZR86_RS19570: ABZR86_RS19570 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 397,355 to 398,713
_RS19570
ABZR86_RS19575: ABZR86_RS19575 - OsmC family protein, at 398,828 to 399,241
_RS19575
ABZR86_RS19580: ABZR86_RS19580 - N-acetylmuramoyl-L-alanine amidase, at 399,430 to 400,182
_RS19580
ABZR86_RS19585: ABZR86_RS19585 - GNAT family N-acetyltransferase, at 400,339 to 400,794
_RS19585
ABZR86_RS19590: ABZR86_RS19590 - GGDEF domain-containing protein, at 400,879 to 402,054
_RS19590
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1 at 398.729 kb on + strand at 398.729 kb on + strand at 398.730 kb on - strand at 398.730 kb on - strand at 398.730 kb on - strand at 398.814 kb on + strand at 398.815 kb on - strand at 398.815 kb on - strand at 398.873 kb on + strand, within ABZR86_RS19575 at 398.873 kb on + strand, within ABZR86_RS19575 at 398.969 kb on + strand, within ABZR86_RS19575 at 398.969 kb on + strand, within ABZR86_RS19575 at 398.969 kb on + strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 398.970 kb on - strand, within ABZR86_RS19575 at 399.014 kb on + strand, within ABZR86_RS19575 at 399.014 kb on + strand, within ABZR86_RS19575 at 399.014 kb on + strand, within ABZR86_RS19575 at 399.014 kb on + strand, within ABZR86_RS19575 at 399.015 kb on - strand, within ABZR86_RS19575 at 399.015 kb on - strand, within ABZR86_RS19575 at 399.015 kb on - strand, within ABZR86_RS19575 at 399.015 kb on - strand, within ABZR86_RS19575 at 399.015 kb on - strand, within ABZR86_RS19575 at 399.094 kb on + strand, within ABZR86_RS19575 at 399.094 kb on + strand, within ABZR86_RS19575 at 399.094 kb on + strand, within ABZR86_RS19575 at 399.095 kb on - strand, within ABZR86_RS19575 at 399.239 kb on + strand at 399.418 kb on + strand at 399.418 kb on + strand at 399.419 kb on - strand at 399.431 kb on + strand at 399.431 kb on + strand at 399.470 kb on + strand at 399.470 kb on + strand at 399.471 kb on - strand at 399.471 kb on - strand at 399.929 kb on + strand, within ABZR86_RS19580 at 399.929 kb on + strand, within ABZR86_RS19580 at 399.930 kb on - strand, within ABZR86_RS19580 at 399.930 kb on - strand, within ABZR86_RS19580 at 399.957 kb on - strand, within ABZR86_RS19580 at 399.957 kb on - strand, within ABZR86_RS19580 at 400.621 kb on - strand, within ABZR86_RS19585 at 400.621 kb on - strand, within ABZR86_RS19585 at 400.792 kb on + strand at 400.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 398,729 + -0.0 398,729 + -0.8 398,730 - +0.0 398,730 - +0.2 398,730 - +0.7 398,814 + +0.3 398,815 - +0.1 398,815 - -0.1 398,873 + ABZR86_RS19575 0.11 +0.3 398,873 + ABZR86_RS19575 0.11 -0.3 398,969 + ABZR86_RS19575 0.34 -0.5 398,969 + ABZR86_RS19575 0.34 -0.5 398,969 + ABZR86_RS19575 0.34 -0.1 398,970 - ABZR86_RS19575 0.34 -0.2 398,970 - ABZR86_RS19575 0.34 +0.7 398,970 - ABZR86_RS19575 0.34 +0.2 398,970 - ABZR86_RS19575 0.34 +0.8 398,970 - ABZR86_RS19575 0.34 -0.2 398,970 - ABZR86_RS19575 0.34 +0.9 399,014 + ABZR86_RS19575 0.45 +0.4 399,014 + ABZR86_RS19575 0.45 +0.2 399,014 + ABZR86_RS19575 0.45 +0.2 399,014 + ABZR86_RS19575 0.45 +0.3 399,015 - ABZR86_RS19575 0.45 +0.1 399,015 - ABZR86_RS19575 0.45 +1.4 399,015 - ABZR86_RS19575 0.45 -0.0 399,015 - ABZR86_RS19575 0.45 -0.4 399,015 - ABZR86_RS19575 0.45 -0.4 399,094 + ABZR86_RS19575 0.64 -0.7 399,094 + ABZR86_RS19575 0.64 +0.2 399,094 + ABZR86_RS19575 0.64 +0.0 399,095 - ABZR86_RS19575 0.64 -1.1 399,239 + +0.4 399,418 + +0.1 399,418 + -0.1 399,419 - +0.2 399,431 + +1.0 399,431 + +0.7 399,470 + +0.5 399,470 + +1.6 399,471 - -0.3 399,471 - -0.1 399,929 + ABZR86_RS19580 0.66 +0.6 399,929 + ABZR86_RS19580 0.66 +0.3 399,930 - ABZR86_RS19580 0.66 -1.4 399,930 - ABZR86_RS19580 0.66 -0.1 399,957 - ABZR86_RS19580 0.70 +0.2 399,957 - ABZR86_RS19580 0.70 -0.1 400,621 - ABZR86_RS19585 0.62 -0.6 400,621 - ABZR86_RS19585 0.62 -1.9 400,792 + +0.1 400,793 - -0.3
Or see this region's nucleotide sequence