Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16820

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16810 and ABZR86_RS16815 are separated by 4 nucleotidesABZR86_RS16815 and ABZR86_RS16820 are separated by 142 nucleotidesABZR86_RS16820 and ABZR86_RS16825 are separated by 98 nucleotidesABZR86_RS16825 and ABZR86_RS16830 are separated by 4 nucleotides ABZR86_RS16810: ABZR86_RS16810 - methylglyoxal synthase, at 3,797,749 to 3,798,630 _RS16810 ABZR86_RS16815: ABZR86_RS16815 - NRDE family protein, at 3,798,635 to 3,799,402 _RS16815 ABZR86_RS16820: ABZR86_RS16820 - YchJ family metal-binding protein, at 3,799,545 to 3,799,946 _RS16820 ABZR86_RS16825: ABZR86_RS16825 - DUF938 domain-containing protein, at 3,800,045 to 3,800,635 _RS16825 ABZR86_RS16830: ABZR86_RS16830 - hypothetical protein, at 3,800,640 to 3,800,837 _RS16830 Position (kb) 3799 3800Strain fitness (log2 ratio) -1 0 1 2 3at 3798.893 kb on + strand, within ABZR86_RS16815at 3798.893 kb on + strand, within ABZR86_RS16815at 3798.894 kb on - strand, within ABZR86_RS16815at 3798.916 kb on + strand, within ABZR86_RS16815at 3798.917 kb on - strand, within ABZR86_RS16815at 3798.957 kb on - strand, within ABZR86_RS16815at 3799.001 kb on + strand, within ABZR86_RS16815at 3799.001 kb on + strand, within ABZR86_RS16815at 3799.001 kb on + strand, within ABZR86_RS16815at 3799.002 kb on - strand, within ABZR86_RS16815at 3799.002 kb on - strand, within ABZR86_RS16815at 3799.052 kb on + strand, within ABZR86_RS16815at 3799.052 kb on + strand, within ABZR86_RS16815at 3799.078 kb on + strand, within ABZR86_RS16815at 3799.079 kb on - strand, within ABZR86_RS16815at 3799.079 kb on - strand, within ABZR86_RS16815at 3799.278 kb on - strand, within ABZR86_RS16815at 3799.278 kb on - strand, within ABZR86_RS16815at 3799.400 kb on + strandat 3799.400 kb on + strandat 3799.406 kb on + strandat 3799.573 kb on + strandat 3799.573 kb on + strandat 3799.573 kb on + strandat 3799.574 kb on - strandat 3799.576 kb on + strandat 3799.576 kb on + strandat 3799.792 kb on + strand, within ABZR86_RS16820at 3799.793 kb on - strand, within ABZR86_RS16820at 3799.793 kb on - strand, within ABZR86_RS16820at 3799.813 kb on + strand, within ABZR86_RS16820at 3799.814 kb on - strand, within ABZR86_RS16820at 3799.814 kb on - strand, within ABZR86_RS16820at 3799.814 kb on - strand, within ABZR86_RS16820at 3799.823 kb on - strand, within ABZR86_RS16820at 3799.894 kb on + strand, within ABZR86_RS16820at 3799.895 kb on - strand, within ABZR86_RS16820at 3800.217 kb on + strand, within ABZR86_RS16825at 3800.229 kb on + strand, within ABZR86_RS16825at 3800.244 kb on + strand, within ABZR86_RS16825at 3800.244 kb on + strand, within ABZR86_RS16825at 3800.244 kb on + strand, within ABZR86_RS16825at 3800.244 kb on + strand, within ABZR86_RS16825at 3800.245 kb on - strand, within ABZR86_RS16825at 3800.245 kb on - strand, within ABZR86_RS16825at 3800.408 kb on - strand, within ABZR86_RS16825at 3800.915 kb on + strandat 3800.916 kb on - strandat 3800.916 kb on - strandat 3800.925 kb on + strandat 3800.926 kb on - strandat 3800.937 kb on + strandat 3800.937 kb on + strandat 3800.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,798,893 + ABZR86_RS16815 0.34 -0.5
3,798,893 + ABZR86_RS16815 0.34 +0.3
3,798,894 - ABZR86_RS16815 0.34 +0.8
3,798,916 + ABZR86_RS16815 0.37 -0.0
3,798,917 - ABZR86_RS16815 0.37 -0.3
3,798,957 - ABZR86_RS16815 0.42 +0.3
3,799,001 + ABZR86_RS16815 0.48 -0.0
3,799,001 + ABZR86_RS16815 0.48 +0.5
3,799,001 + ABZR86_RS16815 0.48 +3.0
3,799,002 - ABZR86_RS16815 0.48 +0.6
3,799,002 - ABZR86_RS16815 0.48 -0.2
3,799,052 + ABZR86_RS16815 0.54 -0.9
3,799,052 + ABZR86_RS16815 0.54 +0.0
3,799,078 + ABZR86_RS16815 0.58 +0.0
3,799,079 - ABZR86_RS16815 0.58 -0.1
3,799,079 - ABZR86_RS16815 0.58 +0.1
3,799,278 - ABZR86_RS16815 0.84 -0.1
3,799,278 - ABZR86_RS16815 0.84 -0.4
3,799,400 + -0.5
3,799,400 + +0.6
3,799,406 + +0.9
3,799,573 + +0.5
3,799,573 + +0.1
3,799,573 + +0.4
3,799,574 - -1.7
3,799,576 + +0.7
3,799,576 + +0.2
3,799,792 + ABZR86_RS16820 0.61 +1.2
3,799,793 - ABZR86_RS16820 0.62 -0.2
3,799,793 - ABZR86_RS16820 0.62 +0.0
3,799,813 + ABZR86_RS16820 0.67 -0.1
3,799,814 - ABZR86_RS16820 0.67 +0.7
3,799,814 - ABZR86_RS16820 0.67 -1.0
3,799,814 - ABZR86_RS16820 0.67 +0.2
3,799,823 - ABZR86_RS16820 0.69 -0.4
3,799,894 + ABZR86_RS16820 0.87 -1.0
3,799,895 - ABZR86_RS16820 0.87 +1.9
3,800,217 + ABZR86_RS16825 0.29 +0.3
3,800,229 + ABZR86_RS16825 0.31 +0.1
3,800,244 + ABZR86_RS16825 0.34 -0.2
3,800,244 + ABZR86_RS16825 0.34 +0.0
3,800,244 + ABZR86_RS16825 0.34 +0.1
3,800,244 + ABZR86_RS16825 0.34 -0.8
3,800,245 - ABZR86_RS16825 0.34 +0.7
3,800,245 - ABZR86_RS16825 0.34 +0.1
3,800,408 - ABZR86_RS16825 0.61 +0.5
3,800,915 + -1.6
3,800,916 - +0.5
3,800,916 - +0.8
3,800,925 + -1.1
3,800,926 - +0.1
3,800,937 + -0.0
3,800,937 + +0.9
3,800,938 - -0.1

Or see this region's nucleotide sequence