Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15470

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15460 and ABZR86_RS15465 are separated by 123 nucleotidesABZR86_RS15465 and ABZR86_RS15470 are separated by 137 nucleotidesABZR86_RS15470 and ABZR86_RS15475 are separated by 141 nucleotidesABZR86_RS15475 and ABZR86_RS15480 are separated by 52 nucleotides ABZR86_RS15460: ABZR86_RS15460 - type I glutamate--ammonia ligase, at 3,479,352 to 3,480,761 _RS15460 ABZR86_RS15465: ABZR86_RS15465 - glutamine amidotransferase, at 3,480,885 to 3,481,580 _RS15465 ABZR86_RS15470: ABZR86_RS15470 - hypothetical protein, at 3,481,718 to 3,482,341 _RS15470 ABZR86_RS15475: ABZR86_RS15475 - hypothetical protein, at 3,482,483 to 3,482,842 _RS15475 ABZR86_RS15480: ABZR86_RS15480 - hypothetical protein, at 3,482,895 to 3,483,788 _RS15480 Position (kb) 3481 3482 3483Strain fitness (log2 ratio) -2 -1 0 1at 3480.748 kb on - strandat 3480.748 kb on - strandat 3480.750 kb on + strandat 3480.849 kb on - strandat 3480.849 kb on - strandat 3480.849 kb on - strandat 3481.578 kb on + strandat 3481.615 kb on + strandat 3481.615 kb on + strandat 3481.664 kb on + strandat 3481.679 kb on - strandat 3481.711 kb on + strandat 3481.711 kb on + strandat 3481.712 kb on - strandat 3481.791 kb on + strand, within ABZR86_RS15470at 3481.792 kb on - strand, within ABZR86_RS15470at 3481.792 kb on - strand, within ABZR86_RS15470at 3481.793 kb on + strand, within ABZR86_RS15470at 3481.793 kb on + strand, within ABZR86_RS15470at 3481.793 kb on + strand, within ABZR86_RS15470at 3481.793 kb on + strand, within ABZR86_RS15470at 3481.793 kb on + strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.794 kb on - strand, within ABZR86_RS15470at 3481.795 kb on + strand, within ABZR86_RS15470at 3481.796 kb on - strand, within ABZR86_RS15470at 3481.850 kb on + strand, within ABZR86_RS15470at 3481.850 kb on + strand, within ABZR86_RS15470at 3481.850 kb on + strand, within ABZR86_RS15470at 3481.854 kb on + strand, within ABZR86_RS15470at 3481.855 kb on - strand, within ABZR86_RS15470at 3481.855 kb on - strand, within ABZR86_RS15470at 3481.855 kb on - strand, within ABZR86_RS15470at 3481.877 kb on + strand, within ABZR86_RS15470at 3481.877 kb on + strand, within ABZR86_RS15470at 3481.877 kb on + strand, within ABZR86_RS15470at 3481.880 kb on + strand, within ABZR86_RS15470at 3481.880 kb on + strand, within ABZR86_RS15470at 3481.880 kb on + strand, within ABZR86_RS15470at 3481.881 kb on - strand, within ABZR86_RS15470at 3481.881 kb on - strand, within ABZR86_RS15470at 3481.881 kb on - strand, within ABZR86_RS15470at 3481.959 kb on + strand, within ABZR86_RS15470at 3481.959 kb on + strand, within ABZR86_RS15470at 3481.959 kb on + strand, within ABZR86_RS15470at 3481.982 kb on + strand, within ABZR86_RS15470at 3482.068 kb on + strand, within ABZR86_RS15470at 3482.069 kb on - strand, within ABZR86_RS15470at 3482.069 kb on - strand, within ABZR86_RS15470at 3482.079 kb on - strand, within ABZR86_RS15470at 3482.079 kb on - strand, within ABZR86_RS15470at 3482.125 kb on + strand, within ABZR86_RS15470at 3482.125 kb on + strand, within ABZR86_RS15470at 3482.126 kb on - strand, within ABZR86_RS15470at 3482.126 kb on - strand, within ABZR86_RS15470at 3482.126 kb on - strand, within ABZR86_RS15470at 3482.222 kb on + strand, within ABZR86_RS15470at 3482.223 kb on - strand, within ABZR86_RS15470at 3482.272 kb on - strand, within ABZR86_RS15470at 3482.272 kb on - strand, within ABZR86_RS15470at 3482.272 kb on - strand, within ABZR86_RS15470at 3482.315 kb on + strandat 3482.316 kb on - strandat 3482.316 kb on - strandat 3482.316 kb on - strandat 3482.327 kb on + strandat 3482.371 kb on + strandat 3482.372 kb on - strandat 3482.499 kb on + strandat 3482.499 kb on + strandat 3482.499 kb on + strandat 3482.500 kb on - strandat 3482.512 kb on + strandat 3482.512 kb on + strandat 3482.512 kb on + strandat 3482.513 kb on - strandat 3482.513 kb on - strandat 3482.513 kb on - strandat 3482.549 kb on + strand, within ABZR86_RS15475at 3482.549 kb on + strand, within ABZR86_RS15475at 3482.549 kb on + strand, within ABZR86_RS15475at 3482.549 kb on + strand, within ABZR86_RS15475at 3482.550 kb on - strand, within ABZR86_RS15475at 3482.636 kb on + strand, within ABZR86_RS15475at 3482.637 kb on - strand, within ABZR86_RS15475at 3482.648 kb on + strand, within ABZR86_RS15475at 3482.682 kb on + strand, within ABZR86_RS15475at 3482.683 kb on - strand, within ABZR86_RS15475at 3482.683 kb on - strand, within ABZR86_RS15475at 3482.697 kb on - strand, within ABZR86_RS15475at 3482.736 kb on - strand, within ABZR86_RS15475at 3482.741 kb on + strand, within ABZR86_RS15475at 3482.741 kb on + strand, within ABZR86_RS15475at 3482.741 kb on + strand, within ABZR86_RS15475at 3482.742 kb on - strand, within ABZR86_RS15475at 3482.742 kb on - strand, within ABZR86_RS15475at 3482.742 kb on - strand, within ABZR86_RS15475at 3482.742 kb on - strand, within ABZR86_RS15475at 3482.744 kb on - strand, within ABZR86_RS15475at 3482.777 kb on - strand, within ABZR86_RS15475at 3482.778 kb on + strand, within ABZR86_RS15475at 3482.813 kb on + strandat 3482.814 kb on - strandat 3482.814 kb on - strandat 3482.814 kb on - strandat 3482.825 kb on + strandat 3482.840 kb on + strandat 3483.013 kb on - strand, within ABZR86_RS15480at 3483.085 kb on + strand, within ABZR86_RS15480at 3483.097 kb on + strand, within ABZR86_RS15480at 3483.097 kb on + strand, within ABZR86_RS15480at 3483.098 kb on - strand, within ABZR86_RS15480at 3483.098 kb on - strand, within ABZR86_RS15480at 3483.127 kb on + strand, within ABZR86_RS15480at 3483.144 kb on + strand, within ABZR86_RS15480at 3483.204 kb on + strand, within ABZR86_RS15480at 3483.204 kb on + strand, within ABZR86_RS15480at 3483.205 kb on - strand, within ABZR86_RS15480at 3483.205 kb on - strand, within ABZR86_RS15480at 3483.205 kb on - strand, within ABZR86_RS15480at 3483.205 kb on - strand, within ABZR86_RS15480at 3483.207 kb on - strand, within ABZR86_RS15480at 3483.207 kb on - strand, within ABZR86_RS15480at 3483.211 kb on - strand, within ABZR86_RS15480at 3483.238 kb on - strand, within ABZR86_RS15480at 3483.244 kb on + strand, within ABZR86_RS15480at 3483.245 kb on - strand, within ABZR86_RS15480at 3483.285 kb on - strand, within ABZR86_RS15480at 3483.285 kb on - strand, within ABZR86_RS15480

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,480,748 - -1.5
3,480,748 - -0.3
3,480,750 + -1.0
3,480,849 - +0.2
3,480,849 - -0.1
3,480,849 - -0.1
3,481,578 + +0.5
3,481,615 + -0.5
3,481,615 + -0.6
3,481,664 + +0.1
3,481,679 - +1.3
3,481,711 + -1.8
3,481,711 + -1.7
3,481,712 - -0.8
3,481,791 + ABZR86_RS15470 0.12 +0.4
3,481,792 - ABZR86_RS15470 0.12 +0.1
3,481,792 - ABZR86_RS15470 0.12 +0.3
3,481,793 + ABZR86_RS15470 0.12 +0.1
3,481,793 + ABZR86_RS15470 0.12 -0.4
3,481,793 + ABZR86_RS15470 0.12 +0.2
3,481,793 + ABZR86_RS15470 0.12 -0.2
3,481,793 + ABZR86_RS15470 0.12 +0.4
3,481,794 - ABZR86_RS15470 0.12 -0.4
3,481,794 - ABZR86_RS15470 0.12 +0.8
3,481,794 - ABZR86_RS15470 0.12 +0.5
3,481,794 - ABZR86_RS15470 0.12 +0.4
3,481,794 - ABZR86_RS15470 0.12 +0.5
3,481,794 - ABZR86_RS15470 0.12 +0.3
3,481,794 - ABZR86_RS15470 0.12 -0.5
3,481,795 + ABZR86_RS15470 0.12 -0.4
3,481,796 - ABZR86_RS15470 0.12 -0.1
3,481,850 + ABZR86_RS15470 0.21 +0.7
3,481,850 + ABZR86_RS15470 0.21 +0.7
3,481,850 + ABZR86_RS15470 0.21 -0.1
3,481,854 + ABZR86_RS15470 0.22 +0.4
3,481,855 - ABZR86_RS15470 0.22 +1.0
3,481,855 - ABZR86_RS15470 0.22 -0.1
3,481,855 - ABZR86_RS15470 0.22 +0.0
3,481,877 + ABZR86_RS15470 0.25 +0.5
3,481,877 + ABZR86_RS15470 0.25 +0.6
3,481,877 + ABZR86_RS15470 0.25 +0.6
3,481,880 + ABZR86_RS15470 0.26 +0.1
3,481,880 + ABZR86_RS15470 0.26 +0.9
3,481,880 + ABZR86_RS15470 0.26 +0.3
3,481,881 - ABZR86_RS15470 0.26 -0.1
3,481,881 - ABZR86_RS15470 0.26 -1.5
3,481,881 - ABZR86_RS15470 0.26 +0.1
3,481,959 + ABZR86_RS15470 0.39 -0.1
3,481,959 + ABZR86_RS15470 0.39 +0.6
3,481,959 + ABZR86_RS15470 0.39 -0.9
3,481,982 + ABZR86_RS15470 0.42 +0.2
3,482,068 + ABZR86_RS15470 0.56 -0.5
3,482,069 - ABZR86_RS15470 0.56 -0.1
3,482,069 - ABZR86_RS15470 0.56 +0.2
3,482,079 - ABZR86_RS15470 0.58 -1.3
3,482,079 - ABZR86_RS15470 0.58 -0.3
3,482,125 + ABZR86_RS15470 0.65 -0.6
3,482,125 + ABZR86_RS15470 0.65 +0.5
3,482,126 - ABZR86_RS15470 0.65 +1.7
3,482,126 - ABZR86_RS15470 0.65 +0.2
3,482,126 - ABZR86_RS15470 0.65 +0.3
3,482,222 + ABZR86_RS15470 0.81 +0.8
3,482,223 - ABZR86_RS15470 0.81 -1.8
3,482,272 - ABZR86_RS15470 0.89 -0.8
3,482,272 - ABZR86_RS15470 0.89 -0.5
3,482,272 - ABZR86_RS15470 0.89 +0.7
3,482,315 + +0.5
3,482,316 - -0.9
3,482,316 - -0.6
3,482,316 - -0.4
3,482,327 + -0.2
3,482,371 + +0.5
3,482,372 - -0.3
3,482,499 + +0.3
3,482,499 + +0.6
3,482,499 + -0.3
3,482,500 - +0.8
3,482,512 + -0.1
3,482,512 + +0.3
3,482,512 + -0.8
3,482,513 - +0.0
3,482,513 - -0.2
3,482,513 - -0.9
3,482,549 + ABZR86_RS15475 0.18 +0.3
3,482,549 + ABZR86_RS15475 0.18 -0.4
3,482,549 + ABZR86_RS15475 0.18 +0.1
3,482,549 + ABZR86_RS15475 0.18 -0.9
3,482,550 - ABZR86_RS15475 0.19 -0.1
3,482,636 + ABZR86_RS15475 0.42 +0.5
3,482,637 - ABZR86_RS15475 0.43 -0.3
3,482,648 + ABZR86_RS15475 0.46 +1.1
3,482,682 + ABZR86_RS15475 0.55 -0.3
3,482,683 - ABZR86_RS15475 0.56 +0.0
3,482,683 - ABZR86_RS15475 0.56 +0.4
3,482,697 - ABZR86_RS15475 0.59 -0.5
3,482,736 - ABZR86_RS15475 0.70 +0.3
3,482,741 + ABZR86_RS15475 0.72 +0.4
3,482,741 + ABZR86_RS15475 0.72 -0.3
3,482,741 + ABZR86_RS15475 0.72 -0.2
3,482,742 - ABZR86_RS15475 0.72 -0.0
3,482,742 - ABZR86_RS15475 0.72 -0.2
3,482,742 - ABZR86_RS15475 0.72 -0.0
3,482,742 - ABZR86_RS15475 0.72 -1.5
3,482,744 - ABZR86_RS15475 0.72 +0.8
3,482,777 - ABZR86_RS15475 0.82 -0.1
3,482,778 + ABZR86_RS15475 0.82 -1.8
3,482,813 + -0.4
3,482,814 - -0.2
3,482,814 - +0.3
3,482,814 - -0.5
3,482,825 + -0.3
3,482,840 + -0.6
3,483,013 - ABZR86_RS15480 0.13 -0.1
3,483,085 + ABZR86_RS15480 0.21 +0.3
3,483,097 + ABZR86_RS15480 0.23 -0.0
3,483,097 + ABZR86_RS15480 0.23 -0.1
3,483,098 - ABZR86_RS15480 0.23 +0.3
3,483,098 - ABZR86_RS15480 0.23 -0.7
3,483,127 + ABZR86_RS15480 0.26 -0.5
3,483,144 + ABZR86_RS15480 0.28 -0.5
3,483,204 + ABZR86_RS15480 0.35 +1.6
3,483,204 + ABZR86_RS15480 0.35 -0.2
3,483,205 - ABZR86_RS15480 0.35 +0.1
3,483,205 - ABZR86_RS15480 0.35 -1.0
3,483,205 - ABZR86_RS15480 0.35 -0.7
3,483,205 - ABZR86_RS15480 0.35 -0.4
3,483,207 - ABZR86_RS15480 0.35 -0.4
3,483,207 - ABZR86_RS15480 0.35 -0.4
3,483,211 - ABZR86_RS15480 0.35 +0.5
3,483,238 - ABZR86_RS15480 0.38 +0.1
3,483,244 + ABZR86_RS15480 0.39 +0.7
3,483,245 - ABZR86_RS15480 0.39 -0.6
3,483,285 - ABZR86_RS15480 0.44 +0.4
3,483,285 - ABZR86_RS15480 0.44 -0.0

Or see this region's nucleotide sequence