Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1524

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1522 and BT1523 are separated by 35 nucleotidesBT1523 and BT1524 are separated by 39 nucleotidesBT1524 and BT1525 are separated by 14 nucleotidesBT1525 and BT1526 are separated by 149 nucleotides BT1522: BT1522 - putative aureobasidin A resistance protein (NCBI ptt file), at 1,877,238 to 1,878,155 BT1522 BT1523: BT1523 - CDP-diacylglycerol-inositol 3-phosphatidyltransferase (NCBI ptt file), at 1,878,191 to 1,878,859 BT1523 BT1524: BT1524 - hypothetical protein (NCBI ptt file), at 1,878,899 to 1,879,363 BT1524 BT1525: BT1525 - phosphatidylglycerophosphatase A (NCBI ptt file), at 1,879,378 to 1,879,857 BT1525 BT1526: BT1526 - myo-inositol-1-phosphate synthase (NCBI ptt file), at 1,880,007 to 1,881,296 BT1526 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1at 1878.193 kb on - strandat 1878.773 kb on - strand, within BT1523at 1878.803 kb on + strandat 1878.859 kb on + strandat 1878.931 kb on + strandat 1879.049 kb on + strand, within BT1524at 1879.127 kb on + strand, within BT1524at 1879.240 kb on - strand, within BT1524at 1879.423 kb on + strandat 1879.435 kb on + strand, within BT1525at 1879.758 kb on + strand, within BT1525at 1880.013 kb on + strandat 1880.018 kb on - strandat 1880.211 kb on - strand, within BT1526at 1880.248 kb on - strand, within BT1526

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,878,193 - +0.7
1,878,773 - BT1523 0.87 -1.6
1,878,803 + -2.6
1,878,859 + -3.3
1,878,931 + -2.2
1,879,049 + BT1524 0.32 -2.6
1,879,127 + BT1524 0.49 -2.6
1,879,240 - BT1524 0.73 -0.6
1,879,423 + -2.6
1,879,435 + BT1525 0.12 -3.0
1,879,758 + BT1525 0.79 -3.4
1,880,013 + -2.7
1,880,018 - -2.4
1,880,211 - BT1526 0.16 -1.0
1,880,248 - BT1526 0.19 -0.3

Or see this region's nucleotide sequence