Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0351 and BT0352 are separated by 80 nucleotides BT0352 and BT0353 are separated by 36 nucleotides BT0353 and BT0354 are separated by 5 nucleotides BT0354 and BT0355 are separated by 21 nucleotides
BT0351: BT0351 - L-arabinose isomerase (NCBI ptt file), at 423,634 to 425,163
BT0351
BT0352: BT0352 - conserved hypothetical protein (NCBI ptt file), at 425,244 to 425,606
BT0352
BT0353: BT0353 - putative sugar epimerase/aldolase (NCBI ptt file), at 425,643 to 426,326
BT0353
BT0354: BT0354 - conserved hypothetical protein (NCBI ptt file), at 426,332 to 427,009
BT0354
BT0355: BT0355 - L-arabinose/L-arabinobiose symporter <small>(from data)</small>, at 427,031 to 428,725
BT0355
Position (kb) 425
426
427 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 424.686 kb on + strand, within BT0351 at 424.755 kb on + strand, within BT0351 at 424.756 kb on - strand, within BT0351 at 424.989 kb on + strand, within BT0351 at 424.990 kb on - strand, within BT0351 at 425.013 kb on - strand at 425.022 kb on + strand at 425.068 kb on - strand at 425.125 kb on + strand at 425.142 kb on - strand at 425.169 kb on - strand at 425.271 kb on - strand at 425.338 kb on + strand, within BT0352 at 425.368 kb on + strand, within BT0352 at 425.397 kb on + strand, within BT0352 at 425.580 kb on + strand at 425.784 kb on + strand, within BT0353 at 425.785 kb on - strand, within BT0353 at 425.849 kb on + strand, within BT0353 at 425.881 kb on - strand, within BT0353 at 426.031 kb on + strand, within BT0353 at 426.035 kb on + strand, within BT0353 at 426.084 kb on + strand, within BT0353 at 426.085 kb on - strand, within BT0353 at 426.101 kb on + strand, within BT0353 at 426.102 kb on - strand, within BT0353 at 426.177 kb on - strand, within BT0353 at 426.254 kb on + strand, within BT0353 at 426.326 kb on + strand at 426.693 kb on + strand, within BT0354 at 426.717 kb on + strand, within BT0354 at 427.047 kb on + strand at 427.151 kb on + strand at 427.220 kb on - strand, within BT0355 at 427.267 kb on - strand, within BT0355
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 424,686 + BT0351 0.69 -2.2 424,755 + BT0351 0.73 -4.7 424,756 - BT0351 0.73 +0.1 424,989 + BT0351 0.89 -3.0 424,990 - BT0351 0.89 -3.5 425,013 - -1.9 425,022 + -3.6 425,068 - -2.6 425,125 + -3.5 425,142 - -2.1 425,169 - -2.6 425,271 - -3.4 425,338 + BT0352 0.26 -2.5 425,368 + BT0352 0.34 -2.6 425,397 + BT0352 0.42 -3.0 425,580 + -1.0 425,784 + BT0353 0.21 -1.5 425,785 - BT0353 0.21 -1.9 425,849 + BT0353 0.30 -3.4 425,881 - BT0353 0.35 -4.9 426,031 + BT0353 0.57 -4.0 426,035 + BT0353 0.57 -2.7 426,084 + BT0353 0.64 -3.0 426,085 - BT0353 0.65 -3.0 426,101 + BT0353 0.67 -4.6 426,102 - BT0353 0.67 -3.0 426,177 - BT0353 0.78 -2.1 426,254 + BT0353 0.89 -0.8 426,326 + -3.0 426,693 + BT0354 0.53 -2.9 426,717 + BT0354 0.57 -2.9 427,047 + -3.4 427,151 + -3.3 427,220 - BT0355 0.11 -2.4 427,267 - BT0355 0.14 -2.7
Or see this region's nucleotide sequence