Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0180 and BT0181 are separated by 12 nucleotides BT0181 and BT0182 are separated by 193 nucleotides
BT0180: BT0180 - 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file), at 187,553 to 190,300
BT0180
BT0181: BT0181 - putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file), at 190,313 to 190,912
BT0181
BT0182: BT0182 - osmo-regulated proline transporter (Na+/proline symporter) (NCBI ptt file), at 191,106 to 192,656
BT0182
Position (kb) 190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.543 kb on - strand, within BT0180 at 189.611 kb on - strand, within BT0180 at 189.618 kb on + strand, within BT0180 at 189.739 kb on + strand, within BT0180 at 189.739 kb on + strand, within BT0180 at 189.739 kb on + strand, within BT0180 at 189.740 kb on - strand, within BT0180 at 189.741 kb on + strand, within BT0180 at 189.881 kb on - strand, within BT0180 at 189.882 kb on + strand, within BT0180 at 190.075 kb on + strand at 190.075 kb on + strand at 190.076 kb on - strand at 190.099 kb on - strand at 190.100 kb on + strand at 190.454 kb on - strand, within BT0181 at 190.454 kb on - strand, within BT0181 at 190.630 kb on + strand, within BT0181 at 190.640 kb on - strand, within BT0181 at 190.676 kb on + strand, within BT0181 at 190.677 kb on - strand, within BT0181 at 190.796 kb on - strand, within BT0181 at 190.938 kb on - strand at 191.020 kb on + strand at 191.037 kb on - strand at 191.080 kb on - strand at 191.111 kb on + strand at 191.142 kb on + strand at 191.181 kb on - strand at 191.206 kb on - strand at 191.262 kb on - strand, within BT0182 at 191.268 kb on - strand, within BT0182 at 191.283 kb on - strand, within BT0182 at 191.284 kb on + strand, within BT0182 at 191.284 kb on + strand, within BT0182 at 191.349 kb on - strand, within BT0182 at 191.441 kb on - strand, within BT0182 at 191.471 kb on - strand, within BT0182 at 191.494 kb on + strand, within BT0182 at 191.495 kb on - strand, within BT0182 at 191.498 kb on + strand, within BT0182 at 191.582 kb on - strand, within BT0182 at 191.593 kb on + strand, within BT0182 at 191.594 kb on - strand, within BT0182 at 191.598 kb on - strand, within BT0182 at 191.616 kb on + strand, within BT0182 at 191.617 kb on - strand, within BT0182 at 191.649 kb on + strand, within BT0182 at 191.651 kb on + strand, within BT0182 at 191.673 kb on - strand, within BT0182 at 191.673 kb on - strand, within BT0182 at 191.762 kb on + strand, within BT0182 at 191.762 kb on + strand, within BT0182 at 191.762 kb on + strand, within BT0182 at 191.763 kb on - strand, within BT0182 at 191.763 kb on - strand, within BT0182 at 191.765 kb on - strand, within BT0182 at 191.858 kb on + strand, within BT0182
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 189,543 - BT0180 0.72 +0.4 189,611 - BT0180 0.75 -0.4 189,618 + BT0180 0.75 +0.4 189,739 + BT0180 0.80 +0.0 189,739 + BT0180 0.80 -2.1 189,739 + BT0180 0.80 -0.6 189,740 - BT0180 0.80 -0.1 189,741 + BT0180 0.80 +0.1 189,881 - BT0180 0.85 +2.1 189,882 + BT0180 0.85 -2.3 190,075 + -1.3 190,075 + -1.1 190,076 - -0.4 190,099 - -2.3 190,100 + -0.6 190,454 - BT0181 0.23 -0.1 190,454 - BT0181 0.23 -0.9 190,630 + BT0181 0.53 -0.6 190,640 - BT0181 0.55 -1.2 190,676 + BT0181 0.60 +0.8 190,677 - BT0181 0.61 -0.7 190,796 - BT0181 0.81 -0.9 190,938 - -1.2 191,020 + -3.5 191,037 - +1.0 191,080 - +0.5 191,111 + +0.4 191,142 + -0.6 191,181 - -0.4 191,206 - -2.6 191,262 - BT0182 0.10 +0.5 191,268 - BT0182 0.10 +0.0 191,283 - BT0182 0.11 -0.5 191,284 + BT0182 0.11 +0.5 191,284 + BT0182 0.11 +0.5 191,349 - BT0182 0.16 -0.2 191,441 - BT0182 0.22 -2.7 191,471 - BT0182 0.24 -0.1 191,494 + BT0182 0.25 -3.0 191,495 - BT0182 0.25 +0.6 191,498 + BT0182 0.25 +0.7 191,582 - BT0182 0.31 -0.1 191,593 + BT0182 0.31 -0.8 191,594 - BT0182 0.31 +1.0 191,598 - BT0182 0.32 -0.3 191,616 + BT0182 0.33 -0.6 191,617 - BT0182 0.33 -0.9 191,649 + BT0182 0.35 -0.4 191,651 + BT0182 0.35 +0.5 191,673 - BT0182 0.37 -1.3 191,673 - BT0182 0.37 +1.0 191,762 + BT0182 0.42 -0.3 191,762 + BT0182 0.42 +0.9 191,762 + BT0182 0.42 +1.1 191,763 - BT0182 0.42 -0.9 191,763 - BT0182 0.42 +0.4 191,765 - BT0182 0.42 +0.9 191,858 + BT0182 0.48 -0.2
Or see this region's nucleotide sequence