Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02699

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02698 and CCNA_02699 are separated by 114 nucleotidesCCNA_02699 and CCNA_02700 overlap by 14 nucleotides CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460 _02698 CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861 _02699 CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864 _02700 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2851.652 kb on - strand, within CCNA_02698at 2851.654 kb on - strand, within CCNA_02698at 2851.656 kb on - strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.678 kb on + strand, within CCNA_02698at 2851.686 kb on + strand, within CCNA_02698at 2851.688 kb on + strand, within CCNA_02698at 2851.719 kb on + strand, within CCNA_02698at 2851.730 kb on + strand, within CCNA_02698at 2851.736 kb on + strand, within CCNA_02698at 2851.738 kb on - strand, within CCNA_02698at 2851.749 kb on - strand, within CCNA_02698at 2851.750 kb on + strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.758 kb on - strand, within CCNA_02698at 2851.779 kb on + strand, within CCNA_02698at 2851.779 kb on + strand, within CCNA_02698at 2851.779 kb on + strand, within CCNA_02698at 2851.779 kb on + strand, within CCNA_02698at 2851.858 kb on - strand, within CCNA_02698at 2851.865 kb on - strandat 2851.873 kb on + strand, within CCNA_02698at 2851.873 kb on + strand, within CCNA_02698at 2851.881 kb on - strand, within CCNA_02698at 2851.882 kb on + strand, within CCNA_02698at 2851.890 kb on - strand, within CCNA_02698at 2851.905 kb on - strand, within CCNA_02698at 2851.907 kb on + strand, within CCNA_02698at 2851.916 kb on + strand, within CCNA_02698at 2851.924 kb on + strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.926 kb on + strand, within CCNA_02698at 2851.934 kb on - strand, within CCNA_02698at 2851.983 kb on + strand, within CCNA_02698at 2851.991 kb on - strand, within CCNA_02698at 2852.001 kb on + strand, within CCNA_02698at 2852.051 kb on + strand, within CCNA_02698at 2852.072 kb on + strand, within CCNA_02698at 2852.080 kb on - strand, within CCNA_02698at 2852.111 kb on + strand, within CCNA_02698at 2852.184 kb on + strand, within CCNA_02698at 2852.192 kb on - strand, within CCNA_02698at 2852.194 kb on + strand, within CCNA_02698at 2852.244 kb on - strand, within CCNA_02698at 2852.272 kb on + strand, within CCNA_02698at 2852.311 kb on + strand, within CCNA_02698at 2852.349 kb on + strand, within CCNA_02698at 2852.349 kb on + strand, within CCNA_02698at 2852.349 kb on + strand, within CCNA_02698at 2852.508 kb on - strandat 2852.509 kb on + strandat 2853.011 kb on + strand, within CCNA_02699at 2853.340 kb on + strand, within CCNA_02699at 2853.590 kb on - strand, within CCNA_02699at 2853.953 kb on + strand, within CCNA_02700at 2853.953 kb on - strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.989 kb on + strand, within CCNA_02700at 2854.052 kb on - strand, within CCNA_02700at 2854.113 kb on + strand, within CCNA_02700at 2854.113 kb on + strand, within CCNA_02700at 2854.114 kb on - strand, within CCNA_02700at 2854.118 kb on + strand, within CCNA_02700at 2854.121 kb on - strand, within CCNA_02700at 2854.121 kb on - strand, within CCNA_02700at 2854.136 kb on + strand, within CCNA_02700at 2854.137 kb on + strand, within CCNA_02700at 2854.141 kb on + strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.149 kb on - strand, within CCNA_02700at 2854.149 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.162 kb on + strand, within CCNA_02700at 2854.228 kb on - strand, within CCNA_02700at 2854.275 kb on - strand, within CCNA_02700at 2854.420 kb on + strand, within CCNA_02700at 2854.442 kb on - strand, within CCNA_02700at 2854.453 kb on + strand, within CCNA_02700at 2854.453 kb on + strand, within CCNA_02700at 2854.474 kb on + strand, within CCNA_02700at 2854.505 kb on + strand, within CCNA_02700at 2854.515 kb on - strand, within CCNA_02700at 2854.532 kb on - strand, within CCNA_02700at 2854.541 kb on - strand, within CCNA_02700at 2854.581 kb on - strand, within CCNA_02700at 2854.596 kb on + strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.608 kb on + strand, within CCNA_02700at 2854.626 kb on + strand, within CCNA_02700at 2854.639 kb on - strand, within CCNA_02700at 2854.679 kb on - strand, within CCNA_02700at 2854.755 kb on + strand, within CCNA_02700at 2854.758 kb on - strand, within CCNA_02700at 2854.799 kb on + strandat 2854.842 kb on + strandat 2854.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,851,652 - CCNA_02698 0.17 -0.8
2,851,654 - CCNA_02698 0.17 +1.7
2,851,656 - CCNA_02698 0.17 -1.0
2,851,678 + CCNA_02698 0.19 +1.2
2,851,678 + CCNA_02698 0.19 +0.7
2,851,678 + CCNA_02698 0.19 +1.2
2,851,686 + CCNA_02698 0.20 +1.6
2,851,688 + CCNA_02698 0.20 +1.4
2,851,719 + CCNA_02698 0.24 +1.2
2,851,730 + CCNA_02698 0.25 +1.2
2,851,736 + CCNA_02698 0.25 +1.4
2,851,738 - CCNA_02698 0.26 -1.0
2,851,749 - CCNA_02698 0.27 +0.2
2,851,750 + CCNA_02698 0.27 +0.3
2,851,758 - CCNA_02698 0.28 -1.5
2,851,758 - CCNA_02698 0.28 +1.4
2,851,779 + CCNA_02698 0.30 +1.9
2,851,779 + CCNA_02698 0.30 -0.7
2,851,779 + CCNA_02698 0.30 +1.5
2,851,779 + CCNA_02698 0.30 +0.9
2,851,858 - CCNA_02698 0.38 -0.1
2,851,865 - +1.0
2,851,873 + CCNA_02698 0.40 +0.6
2,851,873 + CCNA_02698 0.40 +1.5
2,851,881 - CCNA_02698 0.40 +1.1
2,851,882 + CCNA_02698 0.40 +1.0
2,851,890 - CCNA_02698 0.41 -1.8
2,851,905 - CCNA_02698 0.43 +1.4
2,851,907 + CCNA_02698 0.43 +2.0
2,851,916 + CCNA_02698 0.44 +1.7
2,851,924 + CCNA_02698 0.45 +1.2
2,851,926 + CCNA_02698 0.45 +1.6
2,851,926 + CCNA_02698 0.45 -1.0
2,851,934 - CCNA_02698 0.46 +0.5
2,851,983 + CCNA_02698 0.51 +1.2
2,851,991 - CCNA_02698 0.52 -1.2
2,852,001 + CCNA_02698 0.53 +1.6
2,852,051 + CCNA_02698 0.58 +0.9
2,852,072 + CCNA_02698 0.60 +1.1
2,852,080 - CCNA_02698 0.61 +1.2
2,852,111 + CCNA_02698 0.64 +1.4
2,852,184 + CCNA_02698 0.72 +2.5
2,852,192 - CCNA_02698 0.72 -0.4
2,852,194 + CCNA_02698 0.73 +1.9
2,852,244 - CCNA_02698 0.78 -1.5
2,852,272 + CCNA_02698 0.81 +1.6
2,852,311 + CCNA_02698 0.85 +2.0
2,852,349 + CCNA_02698 0.88 +1.4
2,852,349 + CCNA_02698 0.88 +1.9
2,852,349 + CCNA_02698 0.88 +1.8
2,852,508 - +1.6
2,852,509 + +1.1
2,853,011 + CCNA_02699 0.34 +2.0
2,853,340 + CCNA_02699 0.59 +2.0
2,853,590 - CCNA_02699 0.79 +1.0
2,853,953 + CCNA_02700 0.10 +0.9
2,853,953 - CCNA_02700 0.10 +1.5
2,853,980 + CCNA_02700 0.13 -0.6
2,853,980 + CCNA_02700 0.13 +0.7
2,853,988 - CCNA_02700 0.14 +0.6
2,853,988 - CCNA_02700 0.14 -0.0
2,853,988 - CCNA_02700 0.14 +1.3
2,853,988 - CCNA_02700 0.14 +1.3
2,853,988 - CCNA_02700 0.14 -0.3
2,853,988 - CCNA_02700 0.14 +0.5
2,853,988 - CCNA_02700 0.14 +0.3
2,853,988 - CCNA_02700 0.14 +1.1
2,853,988 - CCNA_02700 0.14 +2.4
2,853,989 + CCNA_02700 0.14 +1.3
2,854,052 - CCNA_02700 0.20 +0.3
2,854,113 + CCNA_02700 0.26 -1.1
2,854,113 + CCNA_02700 0.26 -0.1
2,854,114 - CCNA_02700 0.26 -0.0
2,854,118 + CCNA_02700 0.27 +0.1
2,854,121 - CCNA_02700 0.27 +0.8
2,854,121 - CCNA_02700 0.27 +0.5
2,854,136 + CCNA_02700 0.28 +0.8
2,854,137 + CCNA_02700 0.28 -0.7
2,854,141 + CCNA_02700 0.29 -0.8
2,854,144 - CCNA_02700 0.29 -0.1
2,854,144 - CCNA_02700 0.29 +0.6
2,854,147 + CCNA_02700 0.29 +1.0
2,854,147 + CCNA_02700 0.29 -0.4
2,854,147 + CCNA_02700 0.29 +0.6
2,854,147 + CCNA_02700 0.29 +0.7
2,854,147 + CCNA_02700 0.29 -1.8
2,854,149 - CCNA_02700 0.30 -0.0
2,854,149 - CCNA_02700 0.30 +0.2
2,854,155 - CCNA_02700 0.30 +0.7
2,854,155 - CCNA_02700 0.30 +0.7
2,854,155 - CCNA_02700 0.30 -0.4
2,854,155 - CCNA_02700 0.30 +0.8
2,854,162 + CCNA_02700 0.31 -1.1
2,854,228 - CCNA_02700 0.37 +0.8
2,854,275 - CCNA_02700 0.42 +1.4
2,854,420 + CCNA_02700 0.56 +1.0
2,854,442 - CCNA_02700 0.58 +1.4
2,854,453 + CCNA_02700 0.59 -1.0
2,854,453 + CCNA_02700 0.59 -0.1
2,854,474 + CCNA_02700 0.62 +1.0
2,854,505 + CCNA_02700 0.65 -1.2
2,854,515 - CCNA_02700 0.66 +0.0
2,854,532 - CCNA_02700 0.67 +0.9
2,854,541 - CCNA_02700 0.68 +0.8
2,854,581 - CCNA_02700 0.72 +0.9
2,854,596 + CCNA_02700 0.74 +0.8
2,854,604 - CCNA_02700 0.74 +0.3
2,854,604 - CCNA_02700 0.74 +1.1
2,854,604 - CCNA_02700 0.74 +0.7
2,854,604 - CCNA_02700 0.74 +0.7
2,854,604 - CCNA_02700 0.74 +0.9
2,854,608 + CCNA_02700 0.75 +1.5
2,854,626 + CCNA_02700 0.76 -0.2
2,854,639 - CCNA_02700 0.78 +0.9
2,854,679 - CCNA_02700 0.82 +0.8
2,854,755 + CCNA_02700 0.89 +2.8
2,854,758 - CCNA_02700 0.89 +1.8
2,854,799 + +0.9
2,854,842 + +1.8
2,854,850 - +0.9

Or see this region's nucleotide sequence