Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02698 and CCNA_02699 are separated by 114 nucleotides CCNA_02699 and CCNA_02700 overlap by 14 nucleotides
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861
_02699
CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864
_02700
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2851.652 kb on - strand, within CCNA_02698 at 2851.654 kb on - strand, within CCNA_02698 at 2851.656 kb on - strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.686 kb on + strand, within CCNA_02698 at 2851.688 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.730 kb on + strand, within CCNA_02698 at 2851.736 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.749 kb on - strand, within CCNA_02698 at 2851.750 kb on + strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.779 kb on + strand, within CCNA_02698 at 2851.858 kb on - strand, within CCNA_02698 at 2851.865 kb on - strand at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.882 kb on + strand, within CCNA_02698 at 2851.890 kb on - strand, within CCNA_02698 at 2851.905 kb on - strand, within CCNA_02698 at 2851.907 kb on + strand, within CCNA_02698 at 2851.916 kb on + strand, within CCNA_02698 at 2851.924 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.991 kb on - strand, within CCNA_02698 at 2852.001 kb on + strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.072 kb on + strand, within CCNA_02698 at 2852.080 kb on - strand, within CCNA_02698 at 2852.111 kb on + strand, within CCNA_02698 at 2852.184 kb on + strand, within CCNA_02698 at 2852.192 kb on - strand, within CCNA_02698 at 2852.194 kb on + strand, within CCNA_02698 at 2852.244 kb on - strand, within CCNA_02698 at 2852.272 kb on + strand, within CCNA_02698 at 2852.311 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698 at 2852.349 kb on + strand, within CCNA_02698 at 2852.508 kb on - strand at 2852.509 kb on + strand at 2853.011 kb on + strand, within CCNA_02699 at 2853.340 kb on + strand, within CCNA_02699 at 2853.590 kb on - strand, within CCNA_02699 at 2853.953 kb on + strand, within CCNA_02700 at 2853.953 kb on - strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.989 kb on + strand, within CCNA_02700 at 2854.052 kb on - strand, within CCNA_02700 at 2854.113 kb on + strand, within CCNA_02700 at 2854.113 kb on + strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.118 kb on + strand, within CCNA_02700 at 2854.121 kb on - strand, within CCNA_02700 at 2854.121 kb on - strand, within CCNA_02700 at 2854.136 kb on + strand, within CCNA_02700 at 2854.137 kb on + strand, within CCNA_02700 at 2854.141 kb on + strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.149 kb on - strand, within CCNA_02700 at 2854.149 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.162 kb on + strand, within CCNA_02700 at 2854.228 kb on - strand, within CCNA_02700 at 2854.275 kb on - strand, within CCNA_02700 at 2854.420 kb on + strand, within CCNA_02700 at 2854.442 kb on - strand, within CCNA_02700 at 2854.453 kb on + strand, within CCNA_02700 at 2854.453 kb on + strand, within CCNA_02700 at 2854.474 kb on + strand, within CCNA_02700 at 2854.505 kb on + strand, within CCNA_02700 at 2854.515 kb on - strand, within CCNA_02700 at 2854.532 kb on - strand, within CCNA_02700 at 2854.541 kb on - strand, within CCNA_02700 at 2854.581 kb on - strand, within CCNA_02700 at 2854.596 kb on + strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.608 kb on + strand, within CCNA_02700 at 2854.626 kb on + strand, within CCNA_02700 at 2854.639 kb on - strand, within CCNA_02700 at 2854.679 kb on - strand, within CCNA_02700 at 2854.755 kb on + strand, within CCNA_02700 at 2854.758 kb on - strand, within CCNA_02700 at 2854.799 kb on + strand at 2854.842 kb on + strand at 2854.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,851,652 - CCNA_02698 0.17 -0.8 2,851,654 - CCNA_02698 0.17 +1.7 2,851,656 - CCNA_02698 0.17 -1.0 2,851,678 + CCNA_02698 0.19 +1.2 2,851,678 + CCNA_02698 0.19 +0.7 2,851,678 + CCNA_02698 0.19 +1.2 2,851,686 + CCNA_02698 0.20 +1.6 2,851,688 + CCNA_02698 0.20 +1.4 2,851,719 + CCNA_02698 0.24 +1.2 2,851,730 + CCNA_02698 0.25 +1.2 2,851,736 + CCNA_02698 0.25 +1.4 2,851,738 - CCNA_02698 0.26 -1.0 2,851,749 - CCNA_02698 0.27 +0.2 2,851,750 + CCNA_02698 0.27 +0.3 2,851,758 - CCNA_02698 0.28 -1.5 2,851,758 - CCNA_02698 0.28 +1.4 2,851,779 + CCNA_02698 0.30 +1.9 2,851,779 + CCNA_02698 0.30 -0.7 2,851,779 + CCNA_02698 0.30 +1.5 2,851,779 + CCNA_02698 0.30 +0.9 2,851,858 - CCNA_02698 0.38 -0.1 2,851,865 - +1.0 2,851,873 + CCNA_02698 0.40 +0.6 2,851,873 + CCNA_02698 0.40 +1.5 2,851,881 - CCNA_02698 0.40 +1.1 2,851,882 + CCNA_02698 0.40 +1.0 2,851,890 - CCNA_02698 0.41 -1.8 2,851,905 - CCNA_02698 0.43 +1.4 2,851,907 + CCNA_02698 0.43 +2.0 2,851,916 + CCNA_02698 0.44 +1.7 2,851,924 + CCNA_02698 0.45 +1.2 2,851,926 + CCNA_02698 0.45 +1.6 2,851,926 + CCNA_02698 0.45 -1.0 2,851,934 - CCNA_02698 0.46 +0.5 2,851,983 + CCNA_02698 0.51 +1.2 2,851,991 - CCNA_02698 0.52 -1.2 2,852,001 + CCNA_02698 0.53 +1.6 2,852,051 + CCNA_02698 0.58 +0.9 2,852,072 + CCNA_02698 0.60 +1.1 2,852,080 - CCNA_02698 0.61 +1.2 2,852,111 + CCNA_02698 0.64 +1.4 2,852,184 + CCNA_02698 0.72 +2.5 2,852,192 - CCNA_02698 0.72 -0.4 2,852,194 + CCNA_02698 0.73 +1.9 2,852,244 - CCNA_02698 0.78 -1.5 2,852,272 + CCNA_02698 0.81 +1.6 2,852,311 + CCNA_02698 0.85 +2.0 2,852,349 + CCNA_02698 0.88 +1.4 2,852,349 + CCNA_02698 0.88 +1.9 2,852,349 + CCNA_02698 0.88 +1.8 2,852,508 - +1.6 2,852,509 + +1.1 2,853,011 + CCNA_02699 0.34 +2.0 2,853,340 + CCNA_02699 0.59 +2.0 2,853,590 - CCNA_02699 0.79 +1.0 2,853,953 + CCNA_02700 0.10 +0.9 2,853,953 - CCNA_02700 0.10 +1.5 2,853,980 + CCNA_02700 0.13 -0.6 2,853,980 + CCNA_02700 0.13 +0.7 2,853,988 - CCNA_02700 0.14 +0.6 2,853,988 - CCNA_02700 0.14 -0.0 2,853,988 - CCNA_02700 0.14 +1.3 2,853,988 - CCNA_02700 0.14 +1.3 2,853,988 - CCNA_02700 0.14 -0.3 2,853,988 - CCNA_02700 0.14 +0.5 2,853,988 - CCNA_02700 0.14 +0.3 2,853,988 - CCNA_02700 0.14 +1.1 2,853,988 - CCNA_02700 0.14 +2.4 2,853,989 + CCNA_02700 0.14 +1.3 2,854,052 - CCNA_02700 0.20 +0.3 2,854,113 + CCNA_02700 0.26 -1.1 2,854,113 + CCNA_02700 0.26 -0.1 2,854,114 - CCNA_02700 0.26 -0.0 2,854,118 + CCNA_02700 0.27 +0.1 2,854,121 - CCNA_02700 0.27 +0.8 2,854,121 - CCNA_02700 0.27 +0.5 2,854,136 + CCNA_02700 0.28 +0.8 2,854,137 + CCNA_02700 0.28 -0.7 2,854,141 + CCNA_02700 0.29 -0.8 2,854,144 - CCNA_02700 0.29 -0.1 2,854,144 - CCNA_02700 0.29 +0.6 2,854,147 + CCNA_02700 0.29 +1.0 2,854,147 + CCNA_02700 0.29 -0.4 2,854,147 + CCNA_02700 0.29 +0.6 2,854,147 + CCNA_02700 0.29 +0.7 2,854,147 + CCNA_02700 0.29 -1.8 2,854,149 - CCNA_02700 0.30 -0.0 2,854,149 - CCNA_02700 0.30 +0.2 2,854,155 - CCNA_02700 0.30 +0.7 2,854,155 - CCNA_02700 0.30 +0.7 2,854,155 - CCNA_02700 0.30 -0.4 2,854,155 - CCNA_02700 0.30 +0.8 2,854,162 + CCNA_02700 0.31 -1.1 2,854,228 - CCNA_02700 0.37 +0.8 2,854,275 - CCNA_02700 0.42 +1.4 2,854,420 + CCNA_02700 0.56 +1.0 2,854,442 - CCNA_02700 0.58 +1.4 2,854,453 + CCNA_02700 0.59 -1.0 2,854,453 + CCNA_02700 0.59 -0.1 2,854,474 + CCNA_02700 0.62 +1.0 2,854,505 + CCNA_02700 0.65 -1.2 2,854,515 - CCNA_02700 0.66 +0.0 2,854,532 - CCNA_02700 0.67 +0.9 2,854,541 - CCNA_02700 0.68 +0.8 2,854,581 - CCNA_02700 0.72 +0.9 2,854,596 + CCNA_02700 0.74 +0.8 2,854,604 - CCNA_02700 0.74 +0.3 2,854,604 - CCNA_02700 0.74 +1.1 2,854,604 - CCNA_02700 0.74 +0.7 2,854,604 - CCNA_02700 0.74 +0.7 2,854,604 - CCNA_02700 0.74 +0.9 2,854,608 + CCNA_02700 0.75 +1.5 2,854,626 + CCNA_02700 0.76 -0.2 2,854,639 - CCNA_02700 0.78 +0.9 2,854,679 - CCNA_02700 0.82 +0.8 2,854,755 + CCNA_02700 0.89 +2.8 2,854,758 - CCNA_02700 0.89 +1.8 2,854,799 + +0.9 2,854,842 + +1.8 2,854,850 - +0.9
Or see this region's nucleotide sequence