Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00080

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00078 and CCNA_00079 are separated by 87 nucleotidesCCNA_00079 and CCNA_00080 are separated by 193 nucleotidesCCNA_00080 and CCNA_00081 are separated by 34 nucleotidesCCNA_00081 and CCNA_00082 are separated by 249 nucleotides CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326 _00078 CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893 _00079 CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728 _00080 CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972 _00081 CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880 _00082 Position (kb) 84 85Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 83.112 kb on + strand, within CCNA_00078at 83.118 kb on - strand, within CCNA_00078at 83.121 kb on + strand, within CCNA_00078at 83.127 kb on - strand, within CCNA_00078at 83.181 kb on + strandat 83.189 kb on - strandat 83.189 kb on - strandat 83.189 kb on - strandat 83.208 kb on - strandat 83.218 kb on - strandat 83.271 kb on - strandat 83.287 kb on + strandat 83.287 kb on + strandat 83.287 kb on + strandat 83.287 kb on + strandat 83.295 kb on - strandat 83.295 kb on - strandat 83.295 kb on - strandat 83.296 kb on - strandat 83.333 kb on + strandat 83.341 kb on - strandat 83.341 kb on - strandat 83.389 kb on - strandat 83.469 kb on - strand, within CCNA_00079at 83.494 kb on - strand, within CCNA_00079at 83.494 kb on - strand, within CCNA_00079at 83.502 kb on - strand, within CCNA_00079at 83.579 kb on + strand, within CCNA_00079at 83.587 kb on - strand, within CCNA_00079at 83.597 kb on + strand, within CCNA_00079at 83.612 kb on - strand, within CCNA_00079at 83.630 kb on + strand, within CCNA_00079at 83.638 kb on - strand, within CCNA_00079at 83.762 kb on + strand, within CCNA_00079at 83.770 kb on - strand, within CCNA_00079at 83.770 kb on - strand, within CCNA_00079at 83.783 kb on + strand, within CCNA_00079at 83.791 kb on - strand, within CCNA_00079at 83.805 kb on + strand, within CCNA_00079at 83.837 kb on - strand, within CCNA_00079at 83.882 kb on - strandat 83.903 kb on + strandat 83.949 kb on - strandat 83.960 kb on + strandat 83.968 kb on - strandat 83.968 kb on - strandat 84.015 kb on - strandat 84.022 kb on - strandat 84.046 kb on + strandat 84.046 kb on + strandat 84.549 kb on - strand, within CCNA_00080at 84.551 kb on + strand, within CCNA_00080at 84.594 kb on + strand, within CCNA_00080at 84.645 kb on + strand, within CCNA_00080at 84.645 kb on + strand, within CCNA_00080at 84.653 kb on - strand, within CCNA_00080at 84.745 kb on + strandat 84.753 kb on - strandat 84.758 kb on - strandat 84.759 kb on + strandat 84.761 kb on + strandat 84.761 kb on + strandat 84.769 kb on - strandat 84.769 kb on - strandat 84.769 kb on - strandat 84.830 kb on + strand, within CCNA_00081at 84.830 kb on + strand, within CCNA_00081at 84.838 kb on - strand, within CCNA_00081at 84.838 kb on - strand, within CCNA_00081at 84.840 kb on + strand, within CCNA_00081at 84.843 kb on - strand, within CCNA_00081at 84.863 kb on + strand, within CCNA_00081at 84.873 kb on + strand, within CCNA_00081at 84.878 kb on + strand, within CCNA_00081at 84.878 kb on + strand, within CCNA_00081at 84.878 kb on + strand, within CCNA_00081at 84.878 kb on + strand, within CCNA_00081at 84.884 kb on + strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.901 kb on + strand, within CCNA_00081at 84.909 kb on - strand, within CCNA_00081at 84.951 kb on + strand, within CCNA_00081at 84.951 kb on + strand, within CCNA_00081at 84.957 kb on + strandat 84.974 kb on + strandat 84.990 kb on - strandat 84.996 kb on - strandat 85.008 kb on - strandat 85.015 kb on + strandat 85.017 kb on - strandat 85.017 kb on - strandat 85.022 kb on - strandat 85.024 kb on + strandat 85.040 kb on + strandat 85.048 kb on - strandat 85.070 kb on - strandat 85.083 kb on + strandat 85.091 kb on - strandat 85.125 kb on + strandat 85.127 kb on + strandat 85.133 kb on - strandat 85.133 kb on - strandat 85.133 kb on - strandat 85.133 kb on - strandat 85.135 kb on - strandat 85.153 kb on - strandat 85.166 kb on + strandat 85.196 kb on - strandat 85.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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83,112 + CCNA_00078 0.88 -1.7
83,118 - CCNA_00078 0.88 +0.4
83,121 + CCNA_00078 0.89 +0.4
83,127 - CCNA_00078 0.89 +1.1
83,181 + -1.0
83,189 - -1.2
83,189 - -0.3
83,189 - +0.4
83,208 - +1.3
83,218 - +0.8
83,271 - +0.4
83,287 + -0.0
83,287 + -0.4
83,287 + +0.1
83,287 + -1.3
83,295 - +1.2
83,295 - +0.8
83,295 - +0.7
83,296 - +1.0
83,333 + -0.4
83,341 - +1.3
83,341 - +1.2
83,389 - -0.0
83,469 - CCNA_00079 0.11 +2.9
83,494 - CCNA_00079 0.17 +0.6
83,494 - CCNA_00079 0.17 +1.0
83,502 - CCNA_00079 0.18 +0.2
83,579 + CCNA_00079 0.34 -1.4
83,587 - CCNA_00079 0.36 +1.2
83,597 + CCNA_00079 0.38 -0.7
83,612 - CCNA_00079 0.41 +1.1
83,630 + CCNA_00079 0.45 -0.7
83,638 - CCNA_00079 0.47 -0.1
83,762 + CCNA_00079 0.72 -4.0
83,770 - CCNA_00079 0.74 +0.6
83,770 - CCNA_00079 0.74 +1.2
83,783 + CCNA_00079 0.77 -1.7
83,791 - CCNA_00079 0.79 +1.0
83,805 + CCNA_00079 0.81 +0.3
83,837 - CCNA_00079 0.88 +0.7
83,882 - +1.1
83,903 + -1.3
83,949 - -0.3
83,960 + -1.8
83,968 - +0.8
83,968 - -0.8
84,015 - -0.7
84,022 - -3.0
84,046 + -1.8
84,046 + -1.8
84,549 - CCNA_00080 0.72 -0.5
84,551 + CCNA_00080 0.72 -1.5
84,594 + CCNA_00080 0.79 -1.2
84,645 + CCNA_00080 0.87 +0.3
84,645 + CCNA_00080 0.87 -1.2
84,653 - CCNA_00080 0.88 -0.7
84,745 + -1.5
84,753 - +0.5
84,758 - +1.3
84,759 + +0.7
84,761 + +1.3
84,761 + +1.7
84,769 - -0.0
84,769 - +0.6
84,769 - +0.7
84,830 + CCNA_00081 0.32 +0.2
84,830 + CCNA_00081 0.32 -0.6
84,838 - CCNA_00081 0.36 +0.8
84,838 - CCNA_00081 0.36 +0.2
84,840 + CCNA_00081 0.37 -1.0
84,843 - CCNA_00081 0.38 +0.5
84,863 + CCNA_00081 0.48 +0.5
84,873 + CCNA_00081 0.52 +0.2
84,878 + CCNA_00081 0.55 +0.6
84,878 + CCNA_00081 0.55 -0.3
84,878 + CCNA_00081 0.55 +0.1
84,878 + CCNA_00081 0.55 -2.3
84,884 + CCNA_00081 0.58 -0.9
84,886 - CCNA_00081 0.59 +0.2
84,886 - CCNA_00081 0.59 +1.1
84,901 + CCNA_00081 0.66 -1.3
84,909 - CCNA_00081 0.70 +0.0
84,951 + CCNA_00081 0.90 -2.2
84,951 + CCNA_00081 0.90 -0.9
84,957 + -1.0
84,974 + +1.0
84,990 - +0.2
84,996 - +0.8
85,008 - +1.1
85,015 + -0.6
85,017 - +1.7
85,017 - +0.2
85,022 - +0.4
85,024 + -1.3
85,040 + -1.5
85,048 - -0.7
85,070 - +0.7
85,083 + -0.4
85,091 - +0.1
85,125 + -1.3
85,127 + -1.6
85,133 - +0.5
85,133 - +1.0
85,133 - +0.3
85,133 - +0.4
85,135 - +0.5
85,153 - +1.4
85,166 + +0.9
85,196 - +1.9
85,223 - +1.2

Or see this region's nucleotide sequence