Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24045 and CA265_RS24050 are separated by 583 nucleotides CA265_RS24050 and CA265_RS24055 are separated by 371 nucleotides
CA265_RS24045: CA265_RS24045 - SIMPL domain-containing protein, at 5,858,470 to 5,859,156
_RS24045
CA265_RS24050: CA265_RS24050 - DNA-binding protein, at 5,859,740 to 5,860,192
_RS24050
CA265_RS24055: CA265_RS24055 - GNAT family N-acetyltransferase, at 5,860,564 to 5,861,103
_RS24055
Position (kb) 5859
5860
5861 Strain fitness (log2 ratio) -1
0
1
2 at 5858.741 kb on + strand, within CA265_RS24045 at 5858.757 kb on + strand, within CA265_RS24045 at 5858.806 kb on - strand, within CA265_RS24045 at 5858.824 kb on + strand, within CA265_RS24045 at 5858.880 kb on - strand, within CA265_RS24045 at 5858.880 kb on - strand, within CA265_RS24045 at 5858.938 kb on + strand, within CA265_RS24045 at 5858.948 kb on + strand, within CA265_RS24045 at 5858.949 kb on - strand, within CA265_RS24045 at 5858.970 kb on + strand, within CA265_RS24045 at 5859.024 kb on - strand, within CA265_RS24045 at 5859.024 kb on - strand, within CA265_RS24045 at 5859.113 kb on - strand at 5859.162 kb on - strand at 5859.255 kb on + strand at 5859.467 kb on + strand at 5859.468 kb on - strand at 5859.624 kb on + strand at 5859.644 kb on + strand at 5859.646 kb on + strand at 5859.648 kb on + strand at 5859.649 kb on - strand at 5859.708 kb on + strand at 5859.742 kb on - strand at 5859.752 kb on + strand at 5859.789 kb on - strand, within CA265_RS24050 at 5859.817 kb on + strand, within CA265_RS24050 at 5859.854 kb on - strand, within CA265_RS24050 at 5860.053 kb on + strand, within CA265_RS24050 at 5860.054 kb on - strand, within CA265_RS24050 at 5860.054 kb on - strand, within CA265_RS24050 at 5860.063 kb on + strand, within CA265_RS24050 at 5860.063 kb on + strand at 5860.166 kb on - strand at 5860.171 kb on - strand at 5860.201 kb on + strand at 5860.239 kb on + strand at 5860.239 kb on + strand at 5860.241 kb on + strand at 5860.255 kb on + strand at 5860.308 kb on + strand at 5860.309 kb on - strand at 5860.309 kb on - strand at 5860.310 kb on + strand at 5860.313 kb on + strand at 5860.345 kb on + strand at 5860.355 kb on + strand at 5860.420 kb on + strand at 5860.428 kb on - strand at 5860.501 kb on + strand at 5860.543 kb on - strand at 5860.588 kb on - strand at 5860.673 kb on - strand, within CA265_RS24055 at 5860.721 kb on - strand, within CA265_RS24055 at 5860.721 kb on - strand, within CA265_RS24055 at 5860.721 kb on - strand, within CA265_RS24055 at 5860.752 kb on - strand, within CA265_RS24055 at 5860.762 kb on + strand, within CA265_RS24055 at 5860.812 kb on + strand, within CA265_RS24055 at 5860.818 kb on + strand, within CA265_RS24055 at 5860.908 kb on + strand, within CA265_RS24055 at 5860.909 kb on - strand, within CA265_RS24055 at 5860.966 kb on - strand, within CA265_RS24055 at 5861.082 kb on + strand at 5861.083 kb on - strand at 5861.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 5,858,741 + CA265_RS24045 0.39 +0.9 5,858,757 + CA265_RS24045 0.42 -0.4 5,858,806 - CA265_RS24045 0.49 -0.0 5,858,824 + CA265_RS24045 0.52 +0.0 5,858,880 - CA265_RS24045 0.60 -0.1 5,858,880 - CA265_RS24045 0.60 -1.2 5,858,938 + CA265_RS24045 0.68 +0.5 5,858,948 + CA265_RS24045 0.70 +0.2 5,858,949 - CA265_RS24045 0.70 -0.7 5,858,970 + CA265_RS24045 0.73 -0.6 5,859,024 - CA265_RS24045 0.81 +0.4 5,859,024 - CA265_RS24045 0.81 -1.7 5,859,113 - -1.0 5,859,162 - +0.2 5,859,255 + +0.5 5,859,467 + -0.2 5,859,468 - -0.7 5,859,624 + -0.1 5,859,644 + +0.4 5,859,646 + -0.2 5,859,648 + -0.5 5,859,649 - +0.9 5,859,708 + +0.3 5,859,742 - +0.3 5,859,752 + +0.2 5,859,789 - CA265_RS24050 0.11 -0.0 5,859,817 + CA265_RS24050 0.17 +0.7 5,859,854 - CA265_RS24050 0.25 +1.1 5,860,053 + CA265_RS24050 0.69 -0.1 5,860,054 - CA265_RS24050 0.69 -0.1 5,860,054 - CA265_RS24050 0.69 +0.5 5,860,063 + CA265_RS24050 0.71 +0.0 5,860,063 + +2.7 5,860,166 - -0.1 5,860,171 - +0.9 5,860,201 + +1.5 5,860,239 + -1.2 5,860,239 + +0.7 5,860,241 + -0.7 5,860,255 + -0.3 5,860,308 + -0.5 5,860,309 - -0.4 5,860,309 - +0.3 5,860,310 + -0.3 5,860,313 + +0.4 5,860,345 + +0.3 5,860,355 + +0.2 5,860,420 + -0.9 5,860,428 - +1.2 5,860,501 + -0.4 5,860,543 - +1.0 5,860,588 - -0.9 5,860,673 - CA265_RS24055 0.20 +1.6 5,860,721 - CA265_RS24055 0.29 -0.4 5,860,721 - CA265_RS24055 0.29 +0.6 5,860,721 - CA265_RS24055 0.29 +0.7 5,860,752 - CA265_RS24055 0.35 +0.0 5,860,762 + CA265_RS24055 0.37 -1.7 5,860,812 + CA265_RS24055 0.46 -1.4 5,860,818 + CA265_RS24055 0.47 -0.3 5,860,908 + CA265_RS24055 0.64 +0.0 5,860,909 - CA265_RS24055 0.64 -0.0 5,860,966 - CA265_RS24055 0.74 +0.4 5,861,082 + +0.2 5,861,083 - -0.3 5,861,160 - -0.3
Or see this region's nucleotide sequence