Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20785 and CA265_RS20790 are separated by 6 nucleotides CA265_RS20790 and CA265_RS20795 are separated by 37 nucleotides CA265_RS20795 and CA265_RS20800 are separated by 15 nucleotides CA265_RS20800 and CA265_RS20805 are separated by 18 nucleotides
CA265_RS20785: CA265_RS20785 - hypothetical protein, at 5,132,874 to 5,133,194
_RS20785
CA265_RS20790: CA265_RS20790 - hypothetical protein, at 5,133,201 to 5,134,058
_RS20790
CA265_RS20795: CA265_RS20795 - hypothetical protein, at 5,134,096 to 5,134,950
_RS20795
CA265_RS20800: CA265_RS20800 - hypothetical protein, at 5,134,966 to 5,135,166
_RS20800
CA265_RS20805: CA265_RS20805 - methyltransferase, at 5,135,185 to 5,136,048
_RS20805
Position (kb) 5134
5135 Strain fitness (log2 ratio) -1
0
1 at 5133.169 kb on + strand at 5133.248 kb on - strand at 5133.260 kb on + strand at 5133.330 kb on + strand, within CA265_RS20790 at 5133.331 kb on - strand, within CA265_RS20790 at 5133.428 kb on + strand, within CA265_RS20790 at 5133.442 kb on - strand, within CA265_RS20790 at 5133.511 kb on - strand, within CA265_RS20790 at 5133.511 kb on - strand, within CA265_RS20790 at 5133.531 kb on + strand, within CA265_RS20790 at 5133.531 kb on + strand, within CA265_RS20790 at 5133.532 kb on - strand, within CA265_RS20790 at 5133.628 kb on + strand, within CA265_RS20790 at 5133.634 kb on + strand, within CA265_RS20790 at 5133.765 kb on - strand, within CA265_RS20790 at 5133.801 kb on - strand, within CA265_RS20790 at 5133.801 kb on - strand, within CA265_RS20790 at 5133.836 kb on - strand, within CA265_RS20790 at 5133.836 kb on - strand, within CA265_RS20790 at 5133.839 kb on + strand, within CA265_RS20790 at 5133.904 kb on - strand, within CA265_RS20790 at 5133.933 kb on - strand, within CA265_RS20790 at 5134.016 kb on + strand at 5134.117 kb on + strand at 5134.138 kb on + strand at 5134.139 kb on - strand at 5134.272 kb on + strand, within CA265_RS20795 at 5134.273 kb on - strand, within CA265_RS20795 at 5134.322 kb on - strand, within CA265_RS20795 at 5134.330 kb on - strand, within CA265_RS20795 at 5134.339 kb on - strand, within CA265_RS20795 at 5134.346 kb on - strand, within CA265_RS20795 at 5134.525 kb on - strand, within CA265_RS20795 at 5134.530 kb on - strand, within CA265_RS20795 at 5134.530 kb on - strand, within CA265_RS20795 at 5134.574 kb on - strand, within CA265_RS20795 at 5134.659 kb on + strand, within CA265_RS20795 at 5134.660 kb on - strand, within CA265_RS20795 at 5134.660 kb on - strand, within CA265_RS20795 at 5134.763 kb on + strand, within CA265_RS20795 at 5134.764 kb on - strand, within CA265_RS20795 at 5134.764 kb on - strand, within CA265_RS20795 at 5134.918 kb on - strand at 5134.939 kb on - strand at 5135.017 kb on - strand, within CA265_RS20800 at 5135.101 kb on - strand, within CA265_RS20800 at 5135.101 kb on - strand, within CA265_RS20800 at 5135.172 kb on - strand at 5135.355 kb on + strand, within CA265_RS20805 at 5135.355 kb on + strand, within CA265_RS20805 at 5135.381 kb on - strand, within CA265_RS20805 at 5135.473 kb on + strand, within CA265_RS20805 at 5135.474 kb on - strand, within CA265_RS20805 at 5135.476 kb on - strand, within CA265_RS20805 at 5135.593 kb on - strand, within CA265_RS20805 at 5135.743 kb on + strand, within CA265_RS20805 at 5135.744 kb on - strand, within CA265_RS20805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 5,133,169 + +0.9 5,133,248 - +0.4 5,133,260 + +0.3 5,133,330 + CA265_RS20790 0.15 +0.2 5,133,331 - CA265_RS20790 0.15 -0.4 5,133,428 + CA265_RS20790 0.26 -0.8 5,133,442 - CA265_RS20790 0.28 +0.4 5,133,511 - CA265_RS20790 0.36 -0.9 5,133,511 - CA265_RS20790 0.36 -0.7 5,133,531 + CA265_RS20790 0.38 +0.4 5,133,531 + CA265_RS20790 0.38 -0.0 5,133,532 - CA265_RS20790 0.39 +1.0 5,133,628 + CA265_RS20790 0.50 -1.6 5,133,634 + CA265_RS20790 0.50 +1.0 5,133,765 - CA265_RS20790 0.66 -1.7 5,133,801 - CA265_RS20790 0.70 +0.3 5,133,801 - CA265_RS20790 0.70 +1.6 5,133,836 - CA265_RS20790 0.74 +0.9 5,133,836 - CA265_RS20790 0.74 +0.6 5,133,839 + CA265_RS20790 0.74 -1.6 5,133,904 - CA265_RS20790 0.82 -1.1 5,133,933 - CA265_RS20790 0.85 +0.2 5,134,016 + -1.6 5,134,117 + -0.1 5,134,138 + +0.3 5,134,139 - +0.1 5,134,272 + CA265_RS20795 0.21 +0.2 5,134,273 - CA265_RS20795 0.21 +0.1 5,134,322 - CA265_RS20795 0.26 +0.3 5,134,330 - CA265_RS20795 0.27 +0.6 5,134,339 - CA265_RS20795 0.28 +1.1 5,134,346 - CA265_RS20795 0.29 -0.3 5,134,525 - CA265_RS20795 0.50 +0.3 5,134,530 - CA265_RS20795 0.51 +0.8 5,134,530 - CA265_RS20795 0.51 +0.8 5,134,574 - CA265_RS20795 0.56 +0.0 5,134,659 + CA265_RS20795 0.66 -0.9 5,134,660 - CA265_RS20795 0.66 -0.2 5,134,660 - CA265_RS20795 0.66 +0.9 5,134,763 + CA265_RS20795 0.78 -0.3 5,134,764 - CA265_RS20795 0.78 +0.5 5,134,764 - CA265_RS20795 0.78 -0.3 5,134,918 - +0.5 5,134,939 - +0.2 5,135,017 - CA265_RS20800 0.25 +0.3 5,135,101 - CA265_RS20800 0.67 -0.4 5,135,101 - CA265_RS20800 0.67 -0.1 5,135,172 - +0.2 5,135,355 + CA265_RS20805 0.20 +0.7 5,135,355 + CA265_RS20805 0.20 -1.3 5,135,381 - CA265_RS20805 0.23 -0.2 5,135,473 + CA265_RS20805 0.33 -1.0 5,135,474 - CA265_RS20805 0.33 -0.5 5,135,476 - CA265_RS20805 0.34 +0.1 5,135,593 - CA265_RS20805 0.47 +0.2 5,135,743 + CA265_RS20805 0.65 -0.4 5,135,744 - CA265_RS20805 0.65 +0.8
Or see this region's nucleotide sequence