Experiment: R2A with benzoic 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18900 and CA265_RS18905 are separated by 390 nucleotides CA265_RS18905 and CA265_RS18910 are separated by 3 nucleotides CA265_RS18910 and CA265_RS18915 are separated by 18 nucleotides CA265_RS18915 and CA265_RS18920 are separated by 129 nucleotides
CA265_RS18900: CA265_RS18900 - DNA-binding protein, at 4,698,661 to 4,699,185
_RS18900
CA265_RS18905: CA265_RS18905 - 50S ribosomal protein L13, at 4,699,576 to 4,700,019
_RS18905
CA265_RS18910: CA265_RS18910 - 30S ribosomal protein S9, at 4,700,023 to 4,700,409
_RS18910
CA265_RS18915: CA265_RS18915 - 30S ribosomal protein S2, at 4,700,428 to 4,701,261
_RS18915
CA265_RS18920: CA265_RS18920 - translation elongation factor Ts, at 4,701,391 to 4,702,236
_RS18920
Position (kb)
4700
4701 Strain fitness (log2 ratio)
-1
0
1
2 at 4699.032 kb on + strand, within CA265_RS18900 at 4699.114 kb on + strand, within CA265_RS18900 at 4699.115 kb on - strand, within CA265_RS18900 at 4699.166 kb on - strand at 4699.166 kb on - strand at 4699.166 kb on - strand at 4699.168 kb on - strand at 4699.168 kb on - strand at 4699.207 kb on - strand at 4699.207 kb on - strand at 4699.223 kb on - strand at 4699.223 kb on - strand at 4699.244 kb on - strand at 4699.341 kb on - strand at 4699.355 kb on - strand at 4699.355 kb on - strand at 4701.320 kb on + strand at 4701.348 kb on + strand at 4701.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml remove 4,699,032 + CA265_RS18900 0.71 +0.0 4,699,114 + CA265_RS18900 0.86 -0.7 4,699,115 - CA265_RS18900 0.86 -0.4 4,699,166 - +0.3 4,699,166 - -0.3 4,699,166 - -0.0 4,699,168 - +2.2 4,699,168 - +0.2 4,699,207 - -0.7 4,699,207 - -0.3 4,699,223 - -0.1 4,699,223 - +0.3 4,699,244 - +0.3 4,699,341 - -0.0 4,699,355 - -0.1 4,699,355 - +0.9 4,701,320 + +0.7 4,701,348 + +0.0 4,701,357 + -0.0
Or see this region's nucleotide sequence