Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18910

Experiment: R2A with benzoic 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS18900 and CA265_RS18905 are separated by 390 nucleotidesCA265_RS18905 and CA265_RS18910 are separated by 3 nucleotidesCA265_RS18910 and CA265_RS18915 are separated by 18 nucleotidesCA265_RS18915 and CA265_RS18920 are separated by 129 nucleotides CA265_RS18900: CA265_RS18900 - DNA-binding protein, at 4,698,661 to 4,699,185 _RS18900 CA265_RS18905: CA265_RS18905 - 50S ribosomal protein L13, at 4,699,576 to 4,700,019 _RS18905 CA265_RS18910: CA265_RS18910 - 30S ribosomal protein S9, at 4,700,023 to 4,700,409 _RS18910 CA265_RS18915: CA265_RS18915 - 30S ribosomal protein S2, at 4,700,428 to 4,701,261 _RS18915 CA265_RS18920: CA265_RS18920 - translation elongation factor Ts, at 4,701,391 to 4,702,236 _RS18920 Position (kb) 4700 4701Strain fitness (log2 ratio) -1 0 1 2at 4699.032 kb on + strand, within CA265_RS18900at 4699.114 kb on + strand, within CA265_RS18900at 4699.115 kb on - strand, within CA265_RS18900at 4699.166 kb on - strandat 4699.166 kb on - strandat 4699.166 kb on - strandat 4699.168 kb on - strandat 4699.168 kb on - strandat 4699.207 kb on - strandat 4699.207 kb on - strandat 4699.223 kb on - strandat 4699.223 kb on - strandat 4699.244 kb on - strandat 4699.341 kb on - strandat 4699.355 kb on - strandat 4699.355 kb on - strandat 4701.320 kb on + strandat 4701.348 kb on + strandat 4701.357 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with benzoic 0.1 mg/ml
remove
4,699,032 + CA265_RS18900 0.71 +0.0
4,699,114 + CA265_RS18900 0.86 -0.7
4,699,115 - CA265_RS18900 0.86 -0.4
4,699,166 - +0.3
4,699,166 - -0.3
4,699,166 - -0.0
4,699,168 - +2.2
4,699,168 - +0.2
4,699,207 - -0.7
4,699,207 - -0.3
4,699,223 - -0.1
4,699,223 - +0.3
4,699,244 - +0.3
4,699,341 - -0.0
4,699,355 - -0.1
4,699,355 - +0.9
4,701,320 + +0.7
4,701,348 + +0.0
4,701,357 + -0.0

Or see this region's nucleotide sequence