Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26750 and AO353_26755 are separated by 280 nucleotides AO353_26755 and AO353_26760 are separated by 390 nucleotides AO353_26760 and AO353_26765 are separated by 287 nucleotides
AO353_26750: AO353_26750 - serine 3-dehydrogenase, at 5,857,533 to 5,858,966
_26750
AO353_26755: AO353_26755 - hypothetical protein, at 5,859,247 to 5,859,600
_26755
AO353_26760: AO353_26760 - hypothetical protein, at 5,859,991 to 5,860,281
_26760
AO353_26765: AO353_26765 - magnesium-translocating P-type ATPase, at 5,860,569 to 5,863,283
_26765
Position (kb)
5859
5860 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5858.311 kb on + strand, within AO353_26750 at 5858.311 kb on + strand, within AO353_26750 at 5858.311 kb on + strand, within AO353_26750 at 5858.347 kb on + strand, within AO353_26750 at 5858.348 kb on - strand, within AO353_26750 at 5858.348 kb on - strand, within AO353_26750 at 5858.362 kb on + strand, within AO353_26750 at 5858.362 kb on + strand, within AO353_26750 at 5858.363 kb on - strand, within AO353_26750 at 5858.363 kb on - strand, within AO353_26750 at 5858.389 kb on + strand, within AO353_26750 at 5858.389 kb on + strand, within AO353_26750 at 5858.389 kb on + strand, within AO353_26750 at 5858.389 kb on + strand, within AO353_26750 at 5858.390 kb on - strand, within AO353_26750 at 5858.390 kb on - strand, within AO353_26750 at 5858.390 kb on - strand, within AO353_26750 at 5858.453 kb on - strand, within AO353_26750 at 5858.504 kb on - strand, within AO353_26750 at 5858.521 kb on + strand, within AO353_26750 at 5858.521 kb on + strand, within AO353_26750 at 5858.521 kb on + strand, within AO353_26750 at 5858.522 kb on - strand, within AO353_26750 at 5858.522 kb on - strand, within AO353_26750 at 5858.522 kb on - strand, within AO353_26750 at 5858.522 kb on - strand, within AO353_26750 at 5858.522 kb on - strand, within AO353_26750 at 5858.526 kb on - strand, within AO353_26750 at 5858.542 kb on + strand, within AO353_26750 at 5858.542 kb on + strand, within AO353_26750 at 5858.575 kb on + strand, within AO353_26750 at 5858.575 kb on + strand, within AO353_26750 at 5858.575 kb on + strand, within AO353_26750 at 5858.575 kb on + strand, within AO353_26750 at 5858.575 kb on + strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.576 kb on - strand, within AO353_26750 at 5858.580 kb on - strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.722 kb on + strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.723 kb on - strand, within AO353_26750 at 5858.881 kb on + strand at 5858.881 kb on + strand at 5858.881 kb on + strand at 5858.881 kb on + strand at 5858.882 kb on - strand at 5858.882 kb on - strand at 5858.882 kb on - strand at 5858.882 kb on - strand at 5858.882 kb on - strand at 5858.911 kb on + strand at 5858.912 kb on - strand at 5858.912 kb on - strand at 5858.971 kb on + strand at 5858.971 kb on + strand at 5858.971 kb on + strand at 5858.971 kb on + strand at 5858.971 kb on + strand at 5858.971 kb on + strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.972 kb on - strand at 5858.988 kb on + strand at 5858.989 kb on - strand at 5859.033 kb on + strand at 5859.033 kb on + strand at 5859.033 kb on + strand at 5859.033 kb on + strand at 5859.034 kb on - strand at 5859.034 kb on - strand at 5859.105 kb on - strand at 5859.105 kb on - strand at 5859.105 kb on - strand at 5859.158 kb on + strand at 5859.159 kb on - strand at 5859.209 kb on + strand at 5859.428 kb on - strand, within AO353_26755 at 5859.479 kb on - strand, within AO353_26755 at 5859.507 kb on + strand, within AO353_26755 at 5859.507 kb on + strand, within AO353_26755 at 5859.507 kb on + strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.508 kb on - strand, within AO353_26755 at 5859.564 kb on + strand, within AO353_26755 at 5859.565 kb on - strand at 5859.565 kb on - strand at 5859.598 kb on + strand at 5859.598 kb on + strand at 5859.661 kb on - strand at 5859.661 kb on - strand at 5859.661 kb on - strand at 5859.686 kb on + strand at 5859.686 kb on + strand at 5859.686 kb on + strand at 5859.686 kb on + strand at 5859.715 kb on + strand at 5859.723 kb on + strand at 5859.724 kb on - strand at 5859.724 kb on - strand at 5859.745 kb on + strand at 5859.746 kb on - strand at 5859.773 kb on + strand at 5859.773 kb on + strand at 5859.774 kb on - strand at 5859.774 kb on - strand at 5859.774 kb on - strand at 5859.836 kb on + strand at 5859.836 kb on + strand at 5859.836 kb on + strand at 5859.837 kb on - strand at 5859.837 kb on - strand at 5859.882 kb on + strand at 5859.882 kb on + strand at 5859.950 kb on + strand at 5859.991 kb on - strand at 5860.005 kb on + strand at 5860.005 kb on + strand at 5860.010 kb on + strand at 5860.010 kb on + strand at 5860.011 kb on - strand at 5860.011 kb on - strand at 5860.023 kb on - strand, within AO353_26760 at 5860.049 kb on + strand, within AO353_26760 at 5860.242 kb on - strand, within AO353_26760 at 5860.290 kb on + strand at 5860.290 kb on + strand at 5860.304 kb on + strand at 5860.304 kb on + strand at 5860.304 kb on + strand at 5860.304 kb on + strand at 5860.305 kb on - strand at 5860.305 kb on - strand at 5860.305 kb on - strand at 5860.401 kb on - strand at 5860.463 kb on + strand at 5860.463 kb on + strand at 5860.497 kb on + strand at 5860.497 kb on + strand at 5860.513 kb on + strand at 5860.514 kb on - strand at 5860.517 kb on + strand at 5860.517 kb on + strand at 5860.517 kb on + strand at 5860.518 kb on - strand at 5860.579 kb on + strand at 5860.579 kb on + strand at 5860.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 5,858,311 + AO353_26750 0.54 -1.5 5,858,311 + AO353_26750 0.54 -0.5 5,858,311 + AO353_26750 0.54 +0.9 5,858,347 + AO353_26750 0.57 +0.6 5,858,348 - AO353_26750 0.57 -1.2 5,858,348 - AO353_26750 0.57 -0.7 5,858,362 + AO353_26750 0.58 +0.7 5,858,362 + AO353_26750 0.58 +1.2 5,858,363 - AO353_26750 0.58 -1.5 5,858,363 - AO353_26750 0.58 +1.2 5,858,389 + AO353_26750 0.60 -0.7 5,858,389 + AO353_26750 0.60 -1.5 5,858,389 + AO353_26750 0.60 -2.2 5,858,389 + AO353_26750 0.60 -0.8 5,858,390 - AO353_26750 0.60 -0.0 5,858,390 - AO353_26750 0.60 +1.0 5,858,390 - AO353_26750 0.60 -1.8 5,858,453 - AO353_26750 0.64 +0.5 5,858,504 - AO353_26750 0.68 +0.6 5,858,521 + AO353_26750 0.69 -1.4 5,858,521 + AO353_26750 0.69 -1.4 5,858,521 + AO353_26750 0.69 -0.2 5,858,522 - AO353_26750 0.69 -0.7 5,858,522 - AO353_26750 0.69 +0.5 5,858,522 - AO353_26750 0.69 -0.6 5,858,522 - AO353_26750 0.69 +1.0 5,858,522 - AO353_26750 0.69 -0.4 5,858,526 - AO353_26750 0.69 +0.3 5,858,542 + AO353_26750 0.70 -1.0 5,858,542 + AO353_26750 0.70 -0.2 5,858,575 + AO353_26750 0.73 -0.9 5,858,575 + AO353_26750 0.73 +0.1 5,858,575 + AO353_26750 0.73 +0.4 5,858,575 + AO353_26750 0.73 -0.7 5,858,575 + AO353_26750 0.73 -0.7 5,858,576 - AO353_26750 0.73 +0.7 5,858,576 - AO353_26750 0.73 -0.4 5,858,576 - AO353_26750 0.73 +0.2 5,858,576 - AO353_26750 0.73 +1.3 5,858,576 - AO353_26750 0.73 -0.7 5,858,576 - AO353_26750 0.73 -0.8 5,858,576 - AO353_26750 0.73 +1.8 5,858,580 - AO353_26750 0.73 -1.3 5,858,722 + AO353_26750 0.83 -0.3 5,858,722 + -0.7 5,858,722 + AO353_26750 0.83 -1.5 5,858,722 + AO353_26750 0.83 +0.2 5,858,722 + AO353_26750 0.83 -0.0 5,858,722 + AO353_26750 0.83 +0.0 5,858,722 + AO353_26750 0.83 +0.6 5,858,722 + AO353_26750 0.83 -1.3 5,858,723 - AO353_26750 0.83 -0.9 5,858,723 - AO353_26750 0.83 -1.7 5,858,723 - AO353_26750 0.83 -1.8 5,858,723 - AO353_26750 0.83 +1.4 5,858,723 - AO353_26750 0.83 +0.3 5,858,723 - AO353_26750 0.83 -1.3 5,858,723 - AO353_26750 0.83 -0.4 5,858,723 - +0.6 5,858,723 - AO353_26750 0.83 +1.5 5,858,723 - AO353_26750 0.83 +2.2 5,858,723 - AO353_26750 0.83 -0.1 5,858,723 - AO353_26750 0.83 +1.7 5,858,881 + +0.5 5,858,881 + -1.8 5,858,881 + -0.4 5,858,881 + -0.3 5,858,882 - -1.8 5,858,882 - +0.0 5,858,882 - +0.2 5,858,882 - -1.8 5,858,882 - -0.1 5,858,911 + -0.4 5,858,912 - +1.2 5,858,912 - +0.6 5,858,971 + -0.1 5,858,971 + +0.5 5,858,971 + +0.6 5,858,971 + -0.5 5,858,971 + -0.4 5,858,971 + -0.8 5,858,972 - +1.7 5,858,972 - -1.7 5,858,972 - -0.5 5,858,972 - -1.2 5,858,972 - -0.8 5,858,972 - -1.2 5,858,972 - -0.8 5,858,972 - -1.7 5,858,972 - -1.2 5,858,988 + +1.3 5,858,989 - -0.2 5,859,033 + +0.7 5,859,033 + -0.9 5,859,033 + -0.2 5,859,033 + +0.3 5,859,034 - -0.8 5,859,034 - +0.2 5,859,105 - -1.4 5,859,105 - -0.3 5,859,105 - -0.8 5,859,158 + -0.8 5,859,159 - -1.5 5,859,209 + -1.9 5,859,428 - AO353_26755 0.51 -2.0 5,859,479 - AO353_26755 0.66 -0.7 5,859,507 + AO353_26755 0.73 -0.5 5,859,507 + AO353_26755 0.73 +0.8 5,859,507 + AO353_26755 0.73 -1.2 5,859,508 - AO353_26755 0.74 +0.6 5,859,508 - AO353_26755 0.74 -0.9 5,859,508 - AO353_26755 0.74 +1.0 5,859,508 - AO353_26755 0.74 -0.4 5,859,508 - AO353_26755 0.74 +0.4 5,859,508 - AO353_26755 0.74 +0.1 5,859,564 + AO353_26755 0.90 -1.0 5,859,565 - +0.6 5,859,565 - -0.0 5,859,598 + +1.1 5,859,598 + +0.4 5,859,661 - -0.4 5,859,661 - -0.3 5,859,661 - -1.2 5,859,686 + -1.3 5,859,686 + -0.5 5,859,686 + -1.3 5,859,686 + -0.0 5,859,715 + -0.1 5,859,723 + +1.0 5,859,724 - -0.0 5,859,724 - +0.0 5,859,745 + -0.3 5,859,746 - -1.0 5,859,773 + -1.5 5,859,773 + -1.8 5,859,774 - -0.9 5,859,774 - -1.1 5,859,774 - -0.1 5,859,836 + -0.4 5,859,836 + +0.5 5,859,836 + +0.2 5,859,837 - -2.6 5,859,837 - -0.4 5,859,882 + +1.2 5,859,882 + -2.0 5,859,950 + -0.4 5,859,991 - -1.7 5,860,005 + -1.4 5,860,005 + -0.7 5,860,010 + -0.3 5,860,010 + -1.5 5,860,011 - -2.4 5,860,011 - -1.3 5,860,023 - AO353_26760 0.11 +0.7 5,860,049 + AO353_26760 0.20 +0.6 5,860,242 - AO353_26760 0.86 -0.2 5,860,290 + -0.7 5,860,290 + +0.1 5,860,304 + +1.5 5,860,304 + -0.3 5,860,304 + +0.8 5,860,304 + +1.2 5,860,305 - -0.5 5,860,305 - -2.4 5,860,305 - +0.2 5,860,401 - -0.0 5,860,463 + +1.8 5,860,463 + +2.2 5,860,497 + +2.6 5,860,497 + -0.2 5,860,513 + -0.2 5,860,514 - -0.3 5,860,517 + -0.2 5,860,517 + +0.9 5,860,517 + -0.8 5,860,518 - +0.1 5,860,579 + +0.2 5,860,579 + -0.3 5,860,579 + -2.2
Or see this region's nucleotide sequence