Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22065

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22060 and AO353_22065 are separated by 737 nucleotidesAO353_22065 and AO353_22070 are separated by 75 nucleotidesAO353_22070 and AO353_22075 are separated by 86 nucleotides AO353_22060: AO353_22060 - lipid carrier protein, at 4,830,636 to 4,831,103 _22060 AO353_22065: AO353_22065 - zinc-binding protein, at 4,831,841 to 4,832,245 _22065 AO353_22070: AO353_22070 - DnrE protein, at 4,832,321 to 4,832,998 _22070 AO353_22075: AO353_22075 - hypothetical protein, at 4,833,085 to 4,833,732 _22075 Position (kb) 4831 4832 4833Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4831.116 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.135 kb on - strandat 4831.135 kb on - strandat 4831.161 kb on - strandat 4831.184 kb on + strandat 4831.229 kb on - strandat 4831.229 kb on - strandat 4831.242 kb on + strandat 4831.420 kb on + strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strandat 4831.705 kb on - strandat 4831.750 kb on - strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.775 kb on + strandat 4831.776 kb on - strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.779 kb on + strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.780 kb on - strandat 4831.832 kb on - strandat 4831.832 kb on - strandat 4831.886 kb on - strand, within AO353_22065at 4831.975 kb on - strand, within AO353_22065at 4832.217 kb on + strandat 4832.218 kb on - strandat 4832.294 kb on + strandat 4832.471 kb on + strand, within AO353_22070at 4832.471 kb on + strand, within AO353_22070at 4832.472 kb on - strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.564 kb on + strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.565 kb on - strand, within AO353_22070at 4832.713 kb on - strand, within AO353_22070at 4832.808 kb on + strand, within AO353_22070at 4832.973 kb on - strandat 4832.981 kb on - strandat 4833.003 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.021 kb on + strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.022 kb on - strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.024 kb on + strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.025 kb on - strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.047 kb on + strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.048 kb on - strandat 4833.064 kb on - strandat 4833.064 kb on - strandat 4833.153 kb on + strand, within AO353_22075at 4833.153 kb on + strand, within AO353_22075

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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4,831,116 - +1.2
4,831,131 - -0.5
4,831,131 - +0.5
4,831,131 - -0.7
4,831,131 - -1.1
4,831,131 - +1.7
4,831,131 - +0.1
4,831,131 - +0.3
4,831,131 - -0.3
4,831,135 - +0.7
4,831,135 - +0.8
4,831,161 - +0.4
4,831,184 + -0.5
4,831,229 - +1.2
4,831,229 - -0.6
4,831,242 + -0.7
4,831,420 + -1.9
4,831,421 - +1.4
4,831,421 - -0.3
4,831,421 - -1.0
4,831,478 - -0.0
4,831,478 - -1.2
4,831,478 - -1.1
4,831,705 - -1.2
4,831,750 - -0.2
4,831,775 + -0.8
4,831,775 + -0.8
4,831,775 + +0.9
4,831,775 + +0.8
4,831,775 + -0.4
4,831,776 - +0.7
4,831,779 + +0.1
4,831,779 + -0.9
4,831,779 + -0.8
4,831,779 + +0.2
4,831,779 + -0.6
4,831,779 + -0.5
4,831,779 + -0.0
4,831,780 - -1.3
4,831,780 - -1.8
4,831,780 - -0.9
4,831,780 - -0.9
4,831,780 - -0.5
4,831,780 - -1.4
4,831,780 - -1.1
4,831,780 - +0.2
4,831,832 - -0.3
4,831,832 - +0.1
4,831,886 - AO353_22065 0.11 -0.7
4,831,975 - AO353_22065 0.33 -0.2
4,832,217 + -0.7
4,832,218 - +0.2
4,832,294 + +0.7
4,832,471 + AO353_22070 0.22 +0.5
4,832,471 + AO353_22070 0.22 +1.1
4,832,472 - AO353_22070 0.22 +0.8
4,832,564 + AO353_22070 0.36 +0.4
4,832,564 + AO353_22070 0.36 +1.0
4,832,564 + AO353_22070 0.36 -0.3
4,832,564 + AO353_22070 0.36 -0.7
4,832,564 + AO353_22070 0.36 -0.3
4,832,564 + AO353_22070 0.36 -1.2
4,832,564 + AO353_22070 0.36 +0.9
4,832,564 + AO353_22070 0.36 +0.4
4,832,564 + AO353_22070 0.36 -0.0
4,832,564 + AO353_22070 0.36 +0.1
4,832,565 - AO353_22070 0.36 -1.1
4,832,565 - AO353_22070 0.36 +0.8
4,832,565 - AO353_22070 0.36 +0.1
4,832,565 - AO353_22070 0.36 +0.4
4,832,565 - AO353_22070 0.36 +0.4
4,832,565 - AO353_22070 0.36 +0.6
4,832,713 - AO353_22070 0.58 -0.5
4,832,808 + AO353_22070 0.72 +0.1
4,832,973 - -0.0
4,832,981 - +0.7
4,833,003 + -0.5
4,833,021 + +0.2
4,833,021 + +0.5
4,833,021 + +0.2
4,833,021 + +0.5
4,833,021 + -0.3
4,833,021 + -1.1
4,833,021 + -0.2
4,833,022 - +0.8
4,833,022 - -0.6
4,833,022 - -0.4
4,833,022 - -1.4
4,833,024 + +1.2
4,833,024 + +0.7
4,833,024 + -0.1
4,833,024 + -1.1
4,833,024 + -1.5
4,833,025 - -1.3
4,833,025 - +0.1
4,833,025 - -1.2
4,833,025 - -0.3
4,833,047 + +0.4
4,833,047 + -0.8
4,833,047 + +0.0
4,833,047 + -1.8
4,833,047 + -0.9
4,833,047 + -1.3
4,833,047 + +0.5
4,833,048 - +0.0
4,833,048 - +0.1
4,833,048 - -0.9
4,833,048 - -0.6
4,833,048 - +2.8
4,833,048 - -0.3
4,833,048 - -1.2
4,833,048 - -1.2
4,833,048 - +1.0
4,833,048 - +0.8
4,833,048 - -1.1
4,833,048 - -0.8
4,833,064 - -0.3
4,833,064 - +0.5
4,833,153 + AO353_22075 0.10 -1.5
4,833,153 + AO353_22075 0.10 +0.1

Or see this region's nucleotide sequence