Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07955 and AO353_07960 are separated by 273 nucleotides AO353_07960 and AO353_07965 are separated by 18 nucleotides
AO353_07955: AO353_07955 - transketolase, at 1,753,201 to 1,755,198
_07955
AO353_07960: AO353_07960 - ArsR family transcriptional regulator, at 1,755,472 to 1,756,467
_07960
AO353_07965: AO353_07965 - S-adenosylmethionine synthetase, at 1,756,486 to 1,757,676
_07965
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1755.297 kb on + strand at 1755.297 kb on + strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.361 kb on + strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.411 kb on - strand at 1755.426 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.458 kb on - strand at 1755.471 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1756.056 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.271 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.275 kb on + strand, within AO353_07960 at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.390 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.394 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.400 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand at 1756.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 1,755,297 + +0.9 1,755,297 + -1.5 1,755,298 - +0.3 1,755,298 - +0.1 1,755,298 - -1.9 1,755,298 - +0.3 1,755,298 - -0.1 1,755,361 + -0.5 1,755,362 - +0.2 1,755,362 - -1.9 1,755,362 - -0.8 1,755,369 + -2.2 1,755,369 + -1.8 1,755,369 + +0.5 1,755,369 + +0.8 1,755,369 + +1.4 1,755,369 + -0.9 1,755,370 - +0.2 1,755,370 - -1.8 1,755,370 - -0.9 1,755,375 + -1.9 1,755,375 + -1.5 1,755,375 + -0.2 1,755,376 - +1.0 1,755,376 - +0.7 1,755,376 - +0.9 1,755,410 + -1.9 1,755,410 + -1.1 1,755,410 + -0.1 1,755,411 - +0.5 1,755,426 + +0.9 1,755,457 + +0.9 1,755,457 + -0.7 1,755,457 + +1.1 1,755,457 + +0.9 1,755,457 + -0.6 1,755,457 + +0.1 1,755,457 + -0.5 1,755,458 - -0.1 1,755,471 + +0.8 1,755,479 + +1.2 1,755,479 + -0.3 1,755,479 + -1.6 1,756,056 + AO353_07960 0.59 -0.6 1,756,148 + AO353_07960 0.68 -0.5 1,756,148 + AO353_07960 0.68 +2.7 1,756,172 + AO353_07960 0.70 -0.2 1,756,172 + AO353_07960 0.70 +1.0 1,756,172 + AO353_07960 0.70 -1.0 1,756,172 + AO353_07960 0.70 -1.3 1,756,271 + AO353_07960 0.80 -0.4 1,756,271 + AO353_07960 0.80 -0.6 1,756,271 + AO353_07960 0.80 +0.6 1,756,271 + AO353_07960 0.80 -1.0 1,756,271 + AO353_07960 0.80 +0.0 1,756,271 + AO353_07960 0.80 -0.4 1,756,271 + AO353_07960 0.80 -0.2 1,756,271 + AO353_07960 0.80 +0.2 1,756,271 + AO353_07960 0.80 -0.1 1,756,271 + AO353_07960 0.80 -0.5 1,756,271 + AO353_07960 0.80 -0.9 1,756,271 + AO353_07960 0.80 -1.5 1,756,271 + AO353_07960 0.80 +1.2 1,756,271 + AO353_07960 0.80 +0.1 1,756,271 + AO353_07960 0.80 -1.7 1,756,271 + AO353_07960 0.80 -0.6 1,756,271 + AO353_07960 0.80 -0.2 1,756,271 + AO353_07960 0.80 -1.2 1,756,275 + AO353_07960 0.81 -1.2 1,756,275 + AO353_07960 0.81 -0.9 1,756,275 + AO353_07960 0.81 +0.1 1,756,275 + AO353_07960 0.81 -1.8 1,756,275 + AO353_07960 0.81 +0.1 1,756,275 + AO353_07960 0.81 +0.1 1,756,390 + +0.2 1,756,390 + -0.1 1,756,390 + -0.3 1,756,390 + +0.3 1,756,390 + -0.5 1,756,390 + -0.3 1,756,394 + -0.4 1,756,394 + -1.8 1,756,394 + -2.2 1,756,394 + -0.9 1,756,394 + +0.6 1,756,394 + -1.6 1,756,394 + -0.5 1,756,394 + -0.4 1,756,400 + +0.9 1,756,400 + -1.3 1,756,400 + +0.7 1,756,400 + -1.0 1,756,400 + -1.2 1,756,400 + -2.4 1,756,400 + +2.1 1,756,400 + -1.6 1,756,400 + +0.4 1,756,404 + -0.2 1,756,404 + -1.2 1,756,404 + -0.7 1,756,404 + +0.8 1,756,404 + -2.7 1,756,404 + -0.1
Or see this region's nucleotide sequence