Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25230
Experiment: R2A with Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Aluminum chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
6,141,290 | + | -1.0 | |||
6,142,032 | + | -1.5 | |||
6,142,038 | - | +0.3 | |||
6,142,153 | + | -0.5 | |||
6,142,156 | - | +0.8 | |||
6,142,309 | + | +1.0 | |||
6,142,417 | + | CA265_RS25235 | 0.14 | +1.1 | |
6,142,430 | + | CA265_RS25235 | 0.15 | +0.1 | |
6,142,462 | + | CA265_RS25235 | 0.17 | +0.3 | |
6,142,519 | + | CA265_RS25235 | 0.21 | +1.0 | |
6,142,520 | - | CA265_RS25235 | 0.21 | +2.2 | |
6,142,586 | - | CA265_RS25235 | 0.25 | +2.2 | |
6,142,599 | - | CA265_RS25235 | 0.26 | +2.0 | |
6,142,670 | - | CA265_RS25235 | 0.31 | +1.5 | |
6,142,745 | + | CA265_RS25235 | 0.36 | +0.8 | |
6,142,748 | + | CA265_RS25235 | 0.36 | +0.8 | |
6,142,873 | - | CA265_RS25235 | 0.44 | +1.2 | |
6,142,944 | - | CA265_RS25235 | 0.49 | +1.2 | |
6,142,946 | - | CA265_RS25235 | 0.49 | +1.2 | |
6,143,016 | - | CA265_RS25235 | 0.53 | +1.3 | |
6,143,016 | - | CA265_RS25235 | 0.53 | +1.9 | |
6,143,031 | - | CA265_RS25235 | 0.54 | +1.0 |
Or see this region's nucleotide sequence