Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00500

Experiment: R2A with Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00495 and CA265_RS00500 are separated by 9 nucleotidesCA265_RS00500 and CA265_RS00505 are separated by 108 nucleotides CA265_RS00495: CA265_RS00495 - CusA/CzcA family heavy metal efflux RND transporter, at 106,283 to 110,659 _RS00495 CA265_RS00500: CA265_RS00500 - efflux transporter periplasmic adaptor subunit, at 110,669 to 111,841 _RS00500 CA265_RS00505: CA265_RS00505 - xylose isomerase, at 111,950 to 112,795 _RS00505 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1at 109.727 kb on - strand, within CA265_RS00495at 109.792 kb on + strand, within CA265_RS00495at 109.945 kb on - strand, within CA265_RS00495at 109.983 kb on + strand, within CA265_RS00495at 109.985 kb on + strand, within CA265_RS00495at 109.988 kb on - strand, within CA265_RS00495at 110.081 kb on - strand, within CA265_RS00495at 110.115 kb on - strand, within CA265_RS00495at 110.344 kb on + strandat 110.345 kb on - strandat 110.554 kb on + strandat 110.664 kb on - strandat 110.682 kb on - strandat 110.812 kb on + strand, within CA265_RS00500at 110.813 kb on - strand, within CA265_RS00500at 110.875 kb on - strand, within CA265_RS00500at 110.910 kb on + strand, within CA265_RS00500at 110.911 kb on - strand, within CA265_RS00500at 110.940 kb on + strand, within CA265_RS00500at 110.954 kb on - strand, within CA265_RS00500at 110.954 kb on - strand, within CA265_RS00500at 111.047 kb on - strand, within CA265_RS00500at 111.257 kb on + strand, within CA265_RS00500at 111.258 kb on - strand, within CA265_RS00500at 111.300 kb on + strand, within CA265_RS00500at 111.301 kb on - strand, within CA265_RS00500at 111.370 kb on + strand, within CA265_RS00500at 111.375 kb on + strand, within CA265_RS00500at 111.533 kb on - strand, within CA265_RS00500at 111.554 kb on + strand, within CA265_RS00500at 111.591 kb on + strand, within CA265_RS00500at 111.592 kb on - strand, within CA265_RS00500at 111.731 kb on - strandat 111.802 kb on + strandat 111.803 kb on - strandat 111.840 kb on - strandat 111.870 kb on + strandat 111.882 kb on + strandat 111.906 kb on + strandat 111.921 kb on - strandat 112.150 kb on - strand, within CA265_RS00505at 112.155 kb on - strand, within CA265_RS00505at 112.187 kb on - strand, within CA265_RS00505at 112.193 kb on - strand, within CA265_RS00505at 112.207 kb on + strand, within CA265_RS00505at 112.238 kb on - strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.269 kb on - strand, within CA265_RS00505at 112.279 kb on + strand, within CA265_RS00505at 112.280 kb on - strand, within CA265_RS00505at 112.367 kb on + strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.438 kb on - strand, within CA265_RS00505at 112.463 kb on - strand, within CA265_RS00505at 112.517 kb on - strand, within CA265_RS00505at 112.596 kb on + strand, within CA265_RS00505at 112.619 kb on - strand, within CA265_RS00505at 112.747 kb on - strandat 112.747 kb on - strandat 112.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Aluminum chloride 1 mM
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109,727 - CA265_RS00495 0.79 +1.5
109,792 + CA265_RS00495 0.80 -1.4
109,945 - CA265_RS00495 0.84 -0.2
109,983 + CA265_RS00495 0.85 -0.7
109,985 + CA265_RS00495 0.85 -0.2
109,988 - CA265_RS00495 0.85 -0.4
110,081 - CA265_RS00495 0.87 +0.1
110,115 - CA265_RS00495 0.88 -0.3
110,344 + -1.0
110,345 - +0.2
110,554 + +0.4
110,664 - -0.6
110,682 - -0.2
110,812 + CA265_RS00500 0.12 +1.2
110,813 - CA265_RS00500 0.12 -0.1
110,875 - CA265_RS00500 0.18 -0.9
110,910 + CA265_RS00500 0.21 +0.6
110,911 - CA265_RS00500 0.21 +0.0
110,940 + CA265_RS00500 0.23 +0.1
110,954 - CA265_RS00500 0.24 -0.3
110,954 - CA265_RS00500 0.24 -0.0
111,047 - CA265_RS00500 0.32 +1.0
111,257 + CA265_RS00500 0.50 +0.4
111,258 - CA265_RS00500 0.50 +0.8
111,300 + CA265_RS00500 0.54 +1.0
111,301 - CA265_RS00500 0.54 +0.0
111,370 + CA265_RS00500 0.60 -0.8
111,375 + CA265_RS00500 0.60 -0.0
111,533 - CA265_RS00500 0.74 +0.5
111,554 + CA265_RS00500 0.75 -0.7
111,591 + CA265_RS00500 0.79 -0.3
111,592 - CA265_RS00500 0.79 -0.3
111,731 - -0.1
111,802 + -0.8
111,803 - -0.3
111,840 - -0.1
111,870 + +0.5
111,882 + +0.3
111,906 + +0.1
111,921 - -0.1
112,150 - CA265_RS00505 0.24 -0.5
112,155 - CA265_RS00505 0.24 +0.3
112,187 - CA265_RS00505 0.28 -0.1
112,193 - CA265_RS00505 0.29 +0.4
112,207 + CA265_RS00505 0.30 -0.3
112,238 - CA265_RS00505 0.34 +0.9
112,268 + CA265_RS00505 0.38 -0.0
112,268 + CA265_RS00505 0.38 +0.4
112,269 - CA265_RS00505 0.38 -0.0
112,279 + CA265_RS00505 0.39 -2.1
112,280 - CA265_RS00505 0.39 -0.6
112,367 + CA265_RS00505 0.49 +0.0
112,368 - CA265_RS00505 0.49 -0.4
112,368 - CA265_RS00505 0.49 +0.9
112,438 - CA265_RS00505 0.58 -0.0
112,463 - CA265_RS00505 0.61 -0.2
112,517 - CA265_RS00505 0.67 -0.2
112,596 + CA265_RS00505 0.76 +1.4
112,619 - CA265_RS00505 0.79 -0.2
112,747 - -0.8
112,747 - +0.9
112,747 - -0.4

Or see this region's nucleotide sequence