Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2333

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2331 and Ac3H11_2332 are separated by 92 nucleotidesAc3H11_2332 and Ac3H11_2333 are separated by 116 nucleotidesAc3H11_2333 and Ac3H11_2334 are separated by 179 nucleotides Ac3H11_2331 - Peroxide stress regulator; Ferric uptake regulation protein; Fe2+/Zn2+ uptake regulation proteins, at 586,497 to 586,874 _2331 Ac3H11_2332 - hypothetical protein, at 586,967 to 587,311 _2332 Ac3H11_2333 - hypothetical protein, at 587,428 to 588,696 _2333 Ac3H11_2334 - Sel1-like repeat, at 588,876 to 590,873 _2334 Position (kb) 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.530 kb on + strandat 586.531 kb on - strandat 586.531 kb on - strandat 586.531 kb on - strandat 586.531 kb on - strandat 586.531 kb on - strandat 586.698 kb on + strand, within Ac3H11_2331at 586.698 kb on + strand, within Ac3H11_2331at 586.699 kb on - strand, within Ac3H11_2331at 586.839 kb on + strandat 586.840 kb on - strandat 587.361 kb on + strandat 587.361 kb on + strandat 587.362 kb on - strandat 587.387 kb on + strandat 587.409 kb on + strandat 587.409 kb on + strandat 587.409 kb on + strandat 587.512 kb on - strandat 587.512 kb on - strandat 587.512 kb on - strandat 587.599 kb on + strand, within Ac3H11_2333at 587.599 kb on + strand, within Ac3H11_2333at 587.599 kb on + strand, within Ac3H11_2333at 587.599 kb on + strand, within Ac3H11_2333at 587.599 kb on + strand, within Ac3H11_2333at 587.599 kb on + strand, within Ac3H11_2333at 587.600 kb on - strand, within Ac3H11_2333at 587.600 kb on - strand, within Ac3H11_2333at 587.600 kb on - strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.662 kb on + strand, within Ac3H11_2333at 587.663 kb on - strand, within Ac3H11_2333at 587.663 kb on - strand, within Ac3H11_2333at 587.663 kb on - strand, within Ac3H11_2333at 587.663 kb on - strand, within Ac3H11_2333at 587.663 kb on - strand, within Ac3H11_2333at 587.684 kb on - strand, within Ac3H11_2333at 587.773 kb on + strand, within Ac3H11_2333at 587.773 kb on + strand, within Ac3H11_2333at 587.773 kb on + strand, within Ac3H11_2333at 587.774 kb on - strand, within Ac3H11_2333at 587.774 kb on - strand, within Ac3H11_2333at 587.856 kb on + strand, within Ac3H11_2333at 587.856 kb on + strand, within Ac3H11_2333at 587.856 kb on + strand, within Ac3H11_2333at 587.857 kb on - strand, within Ac3H11_2333at 588.011 kb on - strand, within Ac3H11_2333at 588.052 kb on + strand, within Ac3H11_2333at 588.053 kb on - strand, within Ac3H11_2333at 588.053 kb on - strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.073 kb on + strand, within Ac3H11_2333at 588.074 kb on - strand, within Ac3H11_2333at 588.074 kb on - strand, within Ac3H11_2333at 588.074 kb on - strand, within Ac3H11_2333at 588.074 kb on - strand, within Ac3H11_2333at 588.177 kb on - strand, within Ac3H11_2333at 588.316 kb on + strand, within Ac3H11_2333at 588.316 kb on + strand, within Ac3H11_2333at 588.316 kb on + strand, within Ac3H11_2333at 588.317 kb on - strand, within Ac3H11_2333at 588.317 kb on - strand, within Ac3H11_2333at 588.317 kb on - strand, within Ac3H11_2333at 588.574 kb on + strandat 588.574 kb on + strandat 588.575 kb on - strandat 588.575 kb on - strandat 588.575 kb on - strandat 588.667 kb on + strandat 588.667 kb on + strandat 588.667 kb on + strandat 588.667 kb on + strandat 588.668 kb on - strandat 588.668 kb on - strandat 588.668 kb on - strandat 588.668 kb on - strandat 588.668 kb on - strandat 588.694 kb on + strandat 588.694 kb on + strandat 588.695 kb on - strandat 588.695 kb on - strandat 588.695 kb on - strandat 588.695 kb on - strandat 588.747 kb on - strandat 588.747 kb on - strandat 588.862 kb on + strandat 588.877 kb on + strandat 588.877 kb on + strandat 589.156 kb on + strand, within Ac3H11_2334at 589.157 kb on - strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.569 kb on + strand, within Ac3H11_2334at 589.576 kb on + strand, within Ac3H11_2334at 589.576 kb on + strand, within Ac3H11_2334at 589.577 kb on - strand, within Ac3H11_2334at 589.654 kb on + strand, within Ac3H11_2334

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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586,530 + +0.1
586,530 + -0.0
586,530 + -0.3
586,530 + -0.0
586,530 + -1.1
586,530 + +0.1
586,530 + -0.7
586,530 + -0.2
586,530 + +0.5
586,530 + +1.8
586,531 - -0.3
586,531 - -0.4
586,531 - -0.6
586,531 - +0.3
586,531 - +1.5
586,698 + Ac3H11_2331 0.53 -2.1
586,698 + Ac3H11_2331 0.53 -0.8
586,699 - Ac3H11_2331 0.53 -1.9
586,839 + -0.7
586,840 - +0.7
587,361 + +0.8
587,361 + -0.3
587,362 - -0.3
587,387 + -0.3
587,409 + +0.9
587,409 + +0.3
587,409 + -0.3
587,512 - +0.3
587,512 - +0.1
587,512 - +0.2
587,599 + Ac3H11_2333 0.13 +0.1
587,599 + Ac3H11_2333 0.13 +0.2
587,599 + Ac3H11_2333 0.13 +0.5
587,599 + Ac3H11_2333 0.13 -0.9
587,599 + Ac3H11_2333 0.13 -0.7
587,599 + Ac3H11_2333 0.13 +0.2
587,600 - Ac3H11_2333 0.14 -1.4
587,600 - Ac3H11_2333 0.14 -0.4
587,600 - Ac3H11_2333 0.14 +0.0
587,662 + Ac3H11_2333 0.18 +0.3
587,662 + Ac3H11_2333 0.18 +0.9
587,662 + Ac3H11_2333 0.18 -0.9
587,662 + Ac3H11_2333 0.18 -0.3
587,662 + Ac3H11_2333 0.18 -0.9
587,662 + Ac3H11_2333 0.18 +0.6
587,662 + Ac3H11_2333 0.18 +0.9
587,663 - Ac3H11_2333 0.19 -0.3
587,663 - Ac3H11_2333 0.19 +0.7
587,663 - Ac3H11_2333 0.19 -0.2
587,663 - Ac3H11_2333 0.19 -0.2
587,663 - Ac3H11_2333 0.19 +0.7
587,684 - Ac3H11_2333 0.20 -0.7
587,773 + Ac3H11_2333 0.27 -0.2
587,773 + Ac3H11_2333 0.27 -0.4
587,773 + Ac3H11_2333 0.27 +0.2
587,774 - Ac3H11_2333 0.27 -0.0
587,774 - Ac3H11_2333 0.27 -0.8
587,856 + Ac3H11_2333 0.34 -0.2
587,856 + Ac3H11_2333 0.34 +1.5
587,856 + Ac3H11_2333 0.34 -0.5
587,857 - Ac3H11_2333 0.34 -1.0
588,011 - Ac3H11_2333 0.46 +0.6
588,052 + Ac3H11_2333 0.49 -0.8
588,053 - Ac3H11_2333 0.49 -1.6
588,053 - Ac3H11_2333 0.49 +0.5
588,073 + Ac3H11_2333 0.51 -0.2
588,073 + Ac3H11_2333 0.51 -0.1
588,073 + Ac3H11_2333 0.51 -0.8
588,073 + Ac3H11_2333 0.51 +1.1
588,073 + Ac3H11_2333 0.51 +0.6
588,073 + Ac3H11_2333 0.51 +0.1
588,074 - Ac3H11_2333 0.51 -0.0
588,074 - Ac3H11_2333 0.51 -0.5
588,074 - Ac3H11_2333 0.51 -0.6
588,074 - Ac3H11_2333 0.51 -0.7
588,177 - Ac3H11_2333 0.59 +0.1
588,316 + Ac3H11_2333 0.70 -0.1
588,316 + Ac3H11_2333 0.70 -0.1
588,316 + Ac3H11_2333 0.70 -3.6
588,317 - Ac3H11_2333 0.70 -0.5
588,317 - Ac3H11_2333 0.70 +1.1
588,317 - Ac3H11_2333 0.70 +1.4
588,574 + -0.1
588,574 + -0.7
588,575 - -0.8
588,575 - +0.5
588,575 - +0.4
588,667 + -0.9
588,667 + +0.2
588,667 + -0.6
588,667 + +0.1
588,668 - +0.5
588,668 - -0.5
588,668 - +1.7
588,668 - +0.1
588,668 - +0.5
588,694 + -1.1
588,694 + +0.5
588,695 - -0.8
588,695 - -0.1
588,695 - -0.8
588,695 - -0.5
588,747 - +0.3
588,747 - +1.3
588,862 + -1.1
588,877 + -0.1
588,877 + +0.2
589,156 + Ac3H11_2334 0.14 -0.4
589,157 - Ac3H11_2334 0.14 +1.3
589,569 + Ac3H11_2334 0.35 -0.9
589,569 + Ac3H11_2334 0.35 -1.0
589,569 + Ac3H11_2334 0.35 -0.2
589,569 + Ac3H11_2334 0.35 -0.1
589,569 + Ac3H11_2334 0.35 +0.0
589,569 + Ac3H11_2334 0.35 +0.2
589,576 + Ac3H11_2334 0.35 -0.4
589,576 + Ac3H11_2334 0.35 +0.6
589,577 - Ac3H11_2334 0.35 +0.6
589,654 + Ac3H11_2334 0.39 -0.2

Or see this region's nucleotide sequence