Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1260

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1259 and Ac3H11_1260 are separated by 24 nucleotidesAc3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides Ac3H11_1259 - N-formylglutamate deformylase (EC 3.5.1.68), at 77,683 to 78,615 _1259 Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749 _1260 Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308 _1261 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1at 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.974 kb on + strand, within Ac3H11_1259at 77.974 kb on + strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.187 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.404 kb on - strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.429 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.511 kb on + strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.512 kb on - strand, within Ac3H11_1259at 78.668 kb on + strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.669 kb on - strandat 78.831 kb on - strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.875 kb on + strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 78.876 kb on - strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.193 kb on + strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.194 kb on - strand, within Ac3H11_1260at 79.208 kb on + strand, within Ac3H11_1260at 79.209 kb on - strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260at 79.418 kb on + strand, within Ac3H11_1260at 79.831 kb on - strandat 80.142 kb on + strand, within Ac3H11_1261at 80.142 kb on + strand, within Ac3H11_1261at 80.142 kb on + strand, within Ac3H11_1261at 80.143 kb on - strand, within Ac3H11_1261

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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77,682 + -0.1
77,682 + +0.5
77,682 + +0.5
77,682 + -0.1
77,682 + +0.4
77,683 - +0.2
77,683 - +0.1
77,683 - +0.1
77,974 + Ac3H11_1259 0.31 +0.1
77,974 + Ac3H11_1259 0.31 +0.1
77,975 - Ac3H11_1259 0.31 +0.3
77,975 - Ac3H11_1259 0.31 -0.5
77,975 - Ac3H11_1259 0.31 +0.6
78,127 + Ac3H11_1259 0.48 -0.7
78,127 + Ac3H11_1259 0.48 -0.3
78,127 + Ac3H11_1259 0.48 -0.1
78,127 + Ac3H11_1259 0.48 -0.5
78,127 + Ac3H11_1259 0.48 +0.6
78,127 + Ac3H11_1259 0.48 -0.1
78,127 + Ac3H11_1259 0.48 -1.2
78,127 + Ac3H11_1259 0.48 +1.3
78,128 - Ac3H11_1259 0.48 -0.3
78,128 - Ac3H11_1259 0.48 +0.6
78,128 - Ac3H11_1259 0.48 +0.8
78,128 - Ac3H11_1259 0.48 +0.2
78,128 - Ac3H11_1259 0.48 -0.4
78,128 - Ac3H11_1259 0.48 +1.3
78,128 - Ac3H11_1259 0.48 +0.9
78,187 + Ac3H11_1259 0.54 +0.0
78,403 + Ac3H11_1259 0.77 -0.3
78,403 + Ac3H11_1259 0.77 +1.4
78,404 - Ac3H11_1259 0.77 -0.3
78,415 + Ac3H11_1259 0.78 +0.3
78,415 + Ac3H11_1259 0.78 -0.1
78,415 + Ac3H11_1259 0.78 +0.3
78,415 + Ac3H11_1259 0.78 -0.2
78,416 - Ac3H11_1259 0.79 -0.2
78,416 - Ac3H11_1259 0.79 +0.8
78,427 + Ac3H11_1259 0.80 +0.2
78,427 + Ac3H11_1259 0.80 +0.1
78,427 + Ac3H11_1259 0.80 -0.7
78,428 - Ac3H11_1259 0.80 +0.0
78,428 - Ac3H11_1259 0.80 -0.1
78,428 - Ac3H11_1259 0.80 +0.4
78,428 - Ac3H11_1259 0.80 -0.6
78,428 - Ac3H11_1259 0.80 +0.2
78,428 - Ac3H11_1259 0.80 +0.6
78,428 - Ac3H11_1259 0.80 +0.3
78,429 + Ac3H11_1259 0.80 -0.5
78,511 + Ac3H11_1259 0.89 +0.1
78,511 + Ac3H11_1259 0.89 +0.9
78,511 + Ac3H11_1259 0.89 -0.1
78,511 + Ac3H11_1259 0.89 +0.3
78,511 + Ac3H11_1259 0.89 +0.2
78,511 + Ac3H11_1259 0.89 +0.1
78,511 + Ac3H11_1259 0.89 +0.2
78,511 + Ac3H11_1259 0.89 -0.0
78,512 - Ac3H11_1259 0.89 -0.5
78,512 - Ac3H11_1259 0.89 -0.4
78,512 - Ac3H11_1259 0.89 +1.2
78,512 - Ac3H11_1259 0.89 +0.3
78,512 - Ac3H11_1259 0.89 +0.3
78,668 + +1.0
78,669 - +0.5
78,669 - -1.0
78,669 - -0.4
78,669 - +0.2
78,669 - +0.7
78,669 - -0.3
78,669 - +0.1
78,831 - Ac3H11_1260 0.17 +0.3
78,875 + Ac3H11_1260 0.21 -1.1
78,875 + Ac3H11_1260 0.21 -0.6
78,875 + Ac3H11_1260 0.21 +1.0
78,875 + Ac3H11_1260 0.21 +0.1
78,875 + Ac3H11_1260 0.21 -0.8
78,875 + Ac3H11_1260 0.21 -0.5
78,875 + Ac3H11_1260 0.21 -0.7
78,876 - Ac3H11_1260 0.21 -0.3
78,876 - Ac3H11_1260 0.21 +0.3
78,876 - Ac3H11_1260 0.21 -2.9
78,876 - Ac3H11_1260 0.21 -0.7
78,876 - Ac3H11_1260 0.21 +0.3
78,876 - Ac3H11_1260 0.21 +0.5
78,876 - Ac3H11_1260 0.21 -0.0
78,876 - Ac3H11_1260 0.21 -0.5
78,876 - Ac3H11_1260 0.21 -0.1
78,876 - Ac3H11_1260 0.21 +0.2
79,193 + Ac3H11_1260 0.50 -0.3
79,193 + Ac3H11_1260 0.50 -0.3
79,194 - Ac3H11_1260 0.50 -0.7
79,194 - Ac3H11_1260 0.50 -0.8
79,194 - Ac3H11_1260 0.50 +0.1
79,194 - Ac3H11_1260 0.50 -0.3
79,194 - Ac3H11_1260 0.50 -0.2
79,208 + Ac3H11_1260 0.51 -0.0
79,209 - Ac3H11_1260 0.51 -0.2
79,418 + Ac3H11_1260 0.70 +0.0
79,418 + Ac3H11_1260 0.70 +0.5
79,831 - -0.9
80,142 + Ac3H11_1261 0.14 -0.2
80,142 + Ac3H11_1261 0.14 -0.1
80,142 + Ac3H11_1261 0.14 -0.3
80,143 - Ac3H11_1261 0.14 -0.6

Or see this region's nucleotide sequence