Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27925 and AO353_27930 are separated by 957 nucleotides AO353_27930 and AO353_27935 are separated by 148 nucleotides AO353_27935 and AO353_27940 are separated by 35 nucleotides
AO353_27925: AO353_27925 - hypothetical protein, at 6,092,649 to 6,092,981
_27925
AO353_27930: AO353_27930 - LysR family transcriptional regulator, at 6,093,939 to 6,094,823
_27930
AO353_27935: AO353_27935 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,094,972 to 6,095,670
_27935
AO353_27940: AO353_27940 - succinyl-CoA--3-ketoacid-CoA transferase, at 6,095,706 to 6,096,365
_27940
Position (kb)
6093
6094
6095 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 6092.953 kb on + strand at 6092.953 kb on + strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.954 kb on - strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.971 kb on + strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6092.972 kb on - strand at 6093.000 kb on - strand at 6093.000 kb on - strand at 6093.000 kb on - strand at 6093.035 kb on + strand at 6093.035 kb on + strand at 6093.035 kb on + strand at 6093.035 kb on + strand at 6093.036 kb on - strand at 6093.036 kb on - strand at 6093.036 kb on - strand at 6093.036 kb on - strand at 6093.048 kb on + strand at 6093.048 kb on + strand at 6093.117 kb on + strand at 6093.117 kb on + strand at 6093.117 kb on + strand at 6093.118 kb on - strand at 6093.172 kb on - strand at 6093.172 kb on - strand at 6093.223 kb on - strand at 6093.340 kb on + strand at 6093.340 kb on + strand at 6093.340 kb on + strand at 6093.341 kb on - strand at 6093.341 kb on - strand at 6093.368 kb on + strand at 6093.369 kb on - strand at 6093.369 kb on - strand at 6093.539 kb on + strand at 6093.539 kb on + strand at 6093.539 kb on + strand at 6093.539 kb on + strand at 6093.544 kb on + strand at 6093.545 kb on - strand at 6093.545 kb on - strand at 6093.800 kb on - strand at 6093.800 kb on - strand at 6093.832 kb on - strand at 6093.832 kb on - strand at 6093.871 kb on + strand at 6093.871 kb on + strand at 6093.871 kb on + strand at 6093.871 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.875 kb on + strand at 6093.940 kb on + strand at 6093.941 kb on - strand at 6093.941 kb on - strand at 6094.055 kb on + strand, within AO353_27930 at 6094.055 kb on + strand, within AO353_27930 at 6094.056 kb on - strand, within AO353_27930 at 6094.056 kb on - strand, within AO353_27930 at 6094.056 kb on - strand, within AO353_27930 at 6094.056 kb on - strand, within AO353_27930 at 6094.251 kb on - strand, within AO353_27930 at 6094.251 kb on - strand, within AO353_27930 at 6094.251 kb on - strand, within AO353_27930 at 6094.342 kb on + strand, within AO353_27930 at 6094.342 kb on + strand, within AO353_27930 at 6094.342 kb on + strand, within AO353_27930 at 6094.342 kb on + strand, within AO353_27930 at 6094.343 kb on - strand, within AO353_27930 at 6094.343 kb on - strand, within AO353_27930 at 6094.629 kb on + strand, within AO353_27930 at 6094.896 kb on - strand at 6094.959 kb on - strand at 6094.972 kb on - strand at 6094.972 kb on - strand at 6095.002 kb on + strand at 6095.002 kb on + strand at 6095.002 kb on + strand at 6095.003 kb on - strand at 6095.003 kb on - strand at 6095.003 kb on - strand at 6095.034 kb on + strand at 6095.034 kb on + strand at 6095.034 kb on + strand at 6095.035 kb on - strand at 6095.035 kb on - strand at 6095.035 kb on - strand at 6095.035 kb on - strand at 6095.035 kb on - strand at 6095.035 kb on - strand at 6095.070 kb on + strand, within AO353_27935 at 6095.169 kb on - strand, within AO353_27935 at 6095.209 kb on + strand, within AO353_27935 at 6095.209 kb on + strand, within AO353_27935 at 6095.209 kb on + strand, within AO353_27935 at 6095.210 kb on - strand, within AO353_27935 at 6095.210 kb on - strand, within AO353_27935 at 6095.210 kb on - strand, within AO353_27935 at 6095.210 kb on - strand at 6095.210 kb on - strand, within AO353_27935 at 6095.210 kb on - strand, within AO353_27935 at 6095.480 kb on - strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.605 kb on + strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.606 kb on - strand at 6095.644 kb on - strand at 6095.714 kb on + strand at 6095.764 kb on - strand at 6095.766 kb on + strand at 6095.767 kb on - strand at 6095.767 kb on - strand at 6095.767 kb on - strand at 6095.767 kb on - strand at 6095.767 kb on - strand at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.808 kb on + strand, within AO353_27940 at 6095.809 kb on - strand, within AO353_27940 at 6095.809 kb on - strand, within AO353_27940 at 6095.809 kb on - strand, within AO353_27940
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 6,092,953 + +0.7 6,092,953 + +0.6 6,092,954 - +1.1 6,092,954 - +0.1 6,092,954 - -1.5 6,092,954 - -0.4 6,092,954 - +1.6 6,092,954 - +0.0 6,092,954 - -1.1 6,092,954 - -0.4 6,092,971 + -0.3 6,092,971 + -0.7 6,092,971 + +0.8 6,092,971 + -0.2 6,092,971 + +0.2 6,092,971 + -0.7 6,092,971 + -1.3 6,092,971 + +0.3 6,092,971 + -0.4 6,092,971 + +0.3 6,092,971 + +0.7 6,092,972 - +0.4 6,092,972 - -0.2 6,092,972 - -0.2 6,092,972 - +0.9 6,092,972 - -1.5 6,092,972 - +0.7 6,092,972 - +0.4 6,092,972 - -0.2 6,093,000 - +1.4 6,093,000 - +0.6 6,093,000 - +0.1 6,093,035 + +0.3 6,093,035 + +0.7 6,093,035 + +0.6 6,093,035 + -1.0 6,093,036 - -0.7 6,093,036 - -1.6 6,093,036 - +0.6 6,093,036 - +0.3 6,093,048 + -1.2 6,093,048 + +0.8 6,093,117 + -0.2 6,093,117 + +2.2 6,093,117 + +0.0 6,093,118 - +0.6 6,093,172 - +0.3 6,093,172 - +2.0 6,093,223 - -0.1 6,093,340 + -0.4 6,093,340 + +0.8 6,093,340 + +0.1 6,093,341 - +0.5 6,093,341 - +0.8 6,093,368 + +1.0 6,093,369 - +0.6 6,093,369 - +1.1 6,093,539 + -0.7 6,093,539 + +2.0 6,093,539 + -0.7 6,093,539 + +3.8 6,093,544 + -0.9 6,093,545 - +1.9 6,093,545 - +0.5 6,093,800 - -0.4 6,093,800 - -2.0 6,093,832 - -0.7 6,093,832 - -0.5 6,093,871 + -1.2 6,093,871 + -1.5 6,093,871 + -1.2 6,093,871 + -1.0 6,093,875 + -1.1 6,093,875 + -1.4 6,093,875 + +0.3 6,093,875 + +0.2 6,093,875 + -0.2 6,093,875 + +1.1 6,093,875 + +0.5 6,093,875 + +0.1 6,093,875 + -0.9 6,093,875 + +0.0 6,093,875 + +1.0 6,093,875 + +0.1 6,093,875 + -0.7 6,093,940 + +1.6 6,093,941 - -1.2 6,093,941 - +0.0 6,094,055 + AO353_27930 0.13 -0.1 6,094,055 + AO353_27930 0.13 -0.7 6,094,056 - AO353_27930 0.13 -1.1 6,094,056 - AO353_27930 0.13 +0.6 6,094,056 - AO353_27930 0.13 -1.7 6,094,056 - AO353_27930 0.13 -1.0 6,094,251 - AO353_27930 0.35 -1.7 6,094,251 - AO353_27930 0.35 -0.8 6,094,251 - AO353_27930 0.35 +0.3 6,094,342 + AO353_27930 0.46 -1.1 6,094,342 + AO353_27930 0.46 -0.9 6,094,342 + AO353_27930 0.46 -0.1 6,094,342 + AO353_27930 0.46 +0.6 6,094,343 - AO353_27930 0.46 +0.6 6,094,343 - AO353_27930 0.46 +0.2 6,094,629 + AO353_27930 0.78 -2.2 6,094,896 - +1.8 6,094,959 - +0.1 6,094,972 - +1.7 6,094,972 - -0.5 6,095,002 + +0.4 6,095,002 + -1.8 6,095,002 + -0.7 6,095,003 - -0.2 6,095,003 - +0.8 6,095,003 - +1.8 6,095,034 + +1.6 6,095,034 + -0.7 6,095,034 + +0.7 6,095,035 - +1.3 6,095,035 - +1.6 6,095,035 - +1.2 6,095,035 - -1.7 6,095,035 - +1.4 6,095,035 - +2.0 6,095,070 + AO353_27935 0.14 -1.3 6,095,169 - AO353_27935 0.28 -0.8 6,095,209 + AO353_27935 0.34 +0.5 6,095,209 + AO353_27935 0.34 -0.2 6,095,209 + AO353_27935 0.34 -0.6 6,095,210 - AO353_27935 0.34 +2.2 6,095,210 - AO353_27935 0.34 -0.6 6,095,210 - AO353_27935 0.34 +0.0 6,095,210 - -0.2 6,095,210 - AO353_27935 0.34 -0.5 6,095,210 - AO353_27935 0.34 -1.2 6,095,480 - +1.0 6,095,605 + +1.0 6,095,605 + +0.4 6,095,605 + -1.0 6,095,605 + +0.4 6,095,605 + +1.0 6,095,605 + -0.6 6,095,605 + -0.4 6,095,605 + +0.7 6,095,605 + +1.4 6,095,606 - +0.3 6,095,606 - -0.4 6,095,606 - -1.4 6,095,606 - -2.5 6,095,606 - -0.3 6,095,606 - -1.1 6,095,606 - +1.1 6,095,644 - +1.0 6,095,714 + -1.2 6,095,764 - +2.4 6,095,766 + -0.9 6,095,767 - +1.0 6,095,767 - +0.3 6,095,767 - -1.7 6,095,767 - +0.0 6,095,767 - +0.9 6,095,808 + AO353_27940 0.15 -1.7 6,095,808 + AO353_27940 0.15 -1.4 6,095,808 + AO353_27940 0.15 -1.4 6,095,808 + AO353_27940 0.15 +1.2 6,095,808 + AO353_27940 0.15 -1.6 6,095,808 + AO353_27940 0.15 -0.2 6,095,808 + AO353_27940 0.15 -1.4 6,095,808 + AO353_27940 0.15 -0.9 6,095,808 + AO353_27940 0.15 +0.8 6,095,809 - AO353_27940 0.16 +2.6 6,095,809 - AO353_27940 0.16 +1.8 6,095,809 - AO353_27940 0.16 -0.3
Or see this region's nucleotide sequence