Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25285 and AO353_25290 overlap by 4 nucleotides AO353_25290 and AO353_25295 are separated by 3 nucleotides AO353_25295 and AO353_25300 are separated by 789 nucleotides
AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055
_25285
AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002
_25290
AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415
_25295
AO353_25300: AO353_25300 - LysR family transcriptional regulator, at 5,582,205 to 5,583,119
_25300
Position (kb)
5580
5581
5582 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5579.019 kb on - strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.024 kb on + strand at 5579.025 kb on - strand at 5579.025 kb on - strand at 5579.056 kb on - strand at 5579.068 kb on + strand at 5579.398 kb on + strand, within AO353_25290 at 5579.401 kb on + strand, within AO353_25290 at 5579.446 kb on + strand, within AO353_25290 at 5579.525 kb on - strand, within AO353_25290 at 5579.615 kb on - strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.743 kb on + strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.744 kb on - strand, within AO353_25290 at 5579.747 kb on + strand, within AO353_25290 at 5579.747 kb on + strand, within AO353_25290 at 5579.748 kb on - strand, within AO353_25290 at 5579.748 kb on - strand, within AO353_25290 at 5579.824 kb on + strand, within AO353_25290 at 5579.825 kb on - strand, within AO353_25290 at 5579.825 kb on - strand, within AO353_25290 at 5579.915 kb on - strand at 5579.975 kb on - strand at 5580.007 kb on + strand at 5580.008 kb on - strand at 5580.223 kb on + strand, within AO353_25295 at 5580.223 kb on + strand, within AO353_25295 at 5580.223 kb on + strand at 5580.223 kb on + strand, within AO353_25295 at 5580.223 kb on + strand, within AO353_25295 at 5580.223 kb on + strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.224 kb on - strand, within AO353_25295 at 5580.399 kb on + strand, within AO353_25295 at 5580.430 kb on + strand, within AO353_25295 at 5580.431 kb on - strand, within AO353_25295 at 5580.431 kb on - strand, within AO353_25295 at 5580.454 kb on + strand, within AO353_25295 at 5580.461 kb on - strand at 5580.492 kb on + strand, within AO353_25295 at 5580.493 kb on - strand at 5580.652 kb on + strand, within AO353_25295 at 5580.652 kb on + strand, within AO353_25295 at 5580.652 kb on + strand, within AO353_25295 at 5580.653 kb on - strand, within AO353_25295 at 5580.653 kb on - strand, within AO353_25295 at 5580.653 kb on - strand, within AO353_25295 at 5580.653 kb on - strand, within AO353_25295 at 5580.653 kb on - strand, within AO353_25295 at 5580.653 kb on - strand at 5580.653 kb on - strand, within AO353_25295 at 5580.736 kb on + strand, within AO353_25295 at 5580.736 kb on + strand, within AO353_25295 at 5580.765 kb on + strand, within AO353_25295 at 5580.765 kb on + strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.911 kb on - strand, within AO353_25295 at 5580.949 kb on - strand, within AO353_25295 at 5580.952 kb on + strand, within AO353_25295 at 5580.953 kb on - strand, within AO353_25295 at 5580.953 kb on - strand, within AO353_25295 at 5580.953 kb on - strand, within AO353_25295 at 5580.953 kb on - strand, within AO353_25295 at 5580.953 kb on - strand, within AO353_25295 at 5580.955 kb on + strand, within AO353_25295 at 5580.955 kb on + strand, within AO353_25295 at 5580.955 kb on + strand, within AO353_25295 at 5580.955 kb on + strand, within AO353_25295 at 5580.956 kb on - strand at 5580.956 kb on - strand, within AO353_25295 at 5581.003 kb on + strand at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.003 kb on + strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.004 kb on - strand, within AO353_25295 at 5581.008 kb on - strand, within AO353_25295 at 5581.079 kb on + strand, within AO353_25295 at 5581.079 kb on + strand, within AO353_25295 at 5581.080 kb on - strand, within AO353_25295 at 5581.080 kb on - strand, within AO353_25295 at 5581.111 kb on + strand, within AO353_25295 at 5581.111 kb on + strand, within AO353_25295 at 5581.111 kb on + strand, within AO353_25295 at 5581.111 kb on + strand, within AO353_25295 at 5581.111 kb on + strand, within AO353_25295 at 5581.112 kb on - strand, within AO353_25295 at 5581.112 kb on - strand, within AO353_25295 at 5581.249 kb on + strand, within AO353_25295 at 5581.251 kb on + strand, within AO353_25295 at 5581.251 kb on + strand, within AO353_25295 at 5581.251 kb on + strand, within AO353_25295 at 5581.251 kb on + strand, within AO353_25295 at 5581.251 kb on + strand, within AO353_25295 at 5581.358 kb on - strand at 5581.387 kb on + strand at 5581.416 kb on - strand at 5581.484 kb on - strand at 5581.550 kb on + strand at 5581.641 kb on + strand at 5581.642 kb on - strand at 5581.741 kb on + strand at 5581.769 kb on + strand at 5581.830 kb on - strand at 5581.839 kb on - strand at 5581.947 kb on + strand at 5581.948 kb on - strand at 5581.995 kb on + strand at 5582.017 kb on + strand at 5582.057 kb on + strand at 5582.057 kb on + strand at 5582.175 kb on + strand at 5582.176 kb on - strand at 5582.176 kb on - strand at 5582.406 kb on + strand, within AO353_25300 at 5582.406 kb on + strand, within AO353_25300 at 5582.407 kb on - strand, within AO353_25300 at 5582.407 kb on - strand, within AO353_25300 at 5582.407 kb on - strand, within AO353_25300 at 5582.407 kb on - strand, within AO353_25300 at 5582.410 kb on + strand, within AO353_25300 at 5582.410 kb on + strand, within AO353_25300 at 5582.411 kb on - strand, within AO353_25300 at 5582.411 kb on - strand, within AO353_25300 at 5582.411 kb on - strand, within AO353_25300
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 5,579,019 - -0.4 5,579,024 + -0.3 5,579,024 + -0.5 5,579,024 + +2.0 5,579,024 + -0.4 5,579,025 - -0.0 5,579,025 - -1.3 5,579,056 - -0.5 5,579,068 + -0.0 5,579,398 + AO353_25290 0.36 -2.2 5,579,401 + AO353_25290 0.37 -0.1 5,579,446 + AO353_25290 0.41 -0.5 5,579,525 - AO353_25290 0.50 +0.1 5,579,615 - AO353_25290 0.59 +2.0 5,579,743 + AO353_25290 0.73 +0.3 5,579,743 + AO353_25290 0.73 +1.3 5,579,743 + AO353_25290 0.73 -0.7 5,579,743 + AO353_25290 0.73 +0.1 5,579,743 + AO353_25290 0.73 -0.6 5,579,743 + AO353_25290 0.73 +0.5 5,579,743 + AO353_25290 0.73 -0.7 5,579,743 + AO353_25290 0.73 +0.4 5,579,744 - AO353_25290 0.73 +0.3 5,579,744 - AO353_25290 0.73 -1.1 5,579,744 - AO353_25290 0.73 -0.7 5,579,744 - AO353_25290 0.73 +0.1 5,579,744 - AO353_25290 0.73 -1.2 5,579,744 - AO353_25290 0.73 -0.4 5,579,747 + AO353_25290 0.73 -1.5 5,579,747 + AO353_25290 0.73 -1.5 5,579,748 - AO353_25290 0.73 +1.2 5,579,748 - AO353_25290 0.73 +0.9 5,579,824 + AO353_25290 0.81 +0.0 5,579,825 - AO353_25290 0.81 -0.9 5,579,825 - AO353_25290 0.81 +0.1 5,579,915 - -1.1 5,579,975 - -1.1 5,580,007 + +0.5 5,580,008 - +0.4 5,580,223 + AO353_25295 0.15 -1.2 5,580,223 + AO353_25295 0.15 -0.4 5,580,223 + +1.5 5,580,223 + AO353_25295 0.15 +1.3 5,580,223 + AO353_25295 0.15 +0.1 5,580,223 + AO353_25295 0.15 +0.4 5,580,224 - AO353_25295 0.15 +0.7 5,580,224 - AO353_25295 0.15 -1.1 5,580,224 - AO353_25295 0.15 +1.5 5,580,224 - AO353_25295 0.15 -0.3 5,580,224 - AO353_25295 0.15 +0.1 5,580,224 - AO353_25295 0.15 +0.6 5,580,224 - AO353_25295 0.15 +1.2 5,580,224 - AO353_25295 0.15 -0.1 5,580,399 + AO353_25295 0.28 -1.5 5,580,430 + AO353_25295 0.30 +0.2 5,580,431 - AO353_25295 0.30 -0.9 5,580,431 - AO353_25295 0.30 -0.7 5,580,454 + AO353_25295 0.32 +1.5 5,580,461 - +0.9 5,580,492 + AO353_25295 0.34 -1.7 5,580,493 - +0.3 5,580,652 + AO353_25295 0.46 +1.3 5,580,652 + AO353_25295 0.46 +0.1 5,580,652 + AO353_25295 0.46 -0.2 5,580,653 - AO353_25295 0.46 +2.5 5,580,653 - AO353_25295 0.46 -0.6 5,580,653 - AO353_25295 0.46 +2.3 5,580,653 - AO353_25295 0.46 -0.3 5,580,653 - AO353_25295 0.46 -0.1 5,580,653 - +0.9 5,580,653 - AO353_25295 0.46 -0.3 5,580,736 + AO353_25295 0.52 +0.5 5,580,736 + AO353_25295 0.52 -0.0 5,580,765 + AO353_25295 0.54 -0.9 5,580,765 + AO353_25295 0.54 -1.7 5,580,911 - AO353_25295 0.64 +0.2 5,580,911 - AO353_25295 0.64 +1.3 5,580,911 - AO353_25295 0.64 +0.9 5,580,911 - AO353_25295 0.64 -0.3 5,580,911 - AO353_25295 0.64 +0.9 5,580,911 - AO353_25295 0.64 -0.4 5,580,949 - AO353_25295 0.67 -0.5 5,580,952 + AO353_25295 0.67 -0.8 5,580,953 - AO353_25295 0.67 -1.5 5,580,953 - AO353_25295 0.67 +0.6 5,580,953 - AO353_25295 0.67 +0.9 5,580,953 - AO353_25295 0.67 +0.0 5,580,953 - AO353_25295 0.67 -0.1 5,580,955 + AO353_25295 0.67 -0.4 5,580,955 + AO353_25295 0.67 -0.9 5,580,955 + AO353_25295 0.67 -0.4 5,580,955 + AO353_25295 0.67 -0.7 5,580,956 - +1.5 5,580,956 - AO353_25295 0.67 -0.5 5,581,003 + +2.2 5,581,003 + AO353_25295 0.71 +2.0 5,581,003 + AO353_25295 0.71 +0.5 5,581,003 + AO353_25295 0.71 -0.1 5,581,003 + AO353_25295 0.71 -0.6 5,581,003 + AO353_25295 0.71 -0.4 5,581,003 + AO353_25295 0.71 +1.0 5,581,003 + AO353_25295 0.71 -1.0 5,581,003 + AO353_25295 0.71 -2.1 5,581,003 + AO353_25295 0.71 +1.1 5,581,003 + AO353_25295 0.71 -0.0 5,581,003 + AO353_25295 0.71 -0.3 5,581,003 + AO353_25295 0.71 +0.6 5,581,003 + AO353_25295 0.71 -1.8 5,581,004 - AO353_25295 0.71 +0.6 5,581,004 - AO353_25295 0.71 -0.4 5,581,004 - AO353_25295 0.71 -1.5 5,581,004 - AO353_25295 0.71 +1.2 5,581,004 - AO353_25295 0.71 +0.1 5,581,004 - AO353_25295 0.71 +0.3 5,581,008 - AO353_25295 0.71 -0.1 5,581,079 + AO353_25295 0.76 +1.0 5,581,079 + AO353_25295 0.76 +0.1 5,581,080 - AO353_25295 0.76 -1.7 5,581,080 - AO353_25295 0.76 -1.6 5,581,111 + AO353_25295 0.78 -0.5 5,581,111 + AO353_25295 0.78 -1.1 5,581,111 + AO353_25295 0.78 -0.2 5,581,111 + AO353_25295 0.78 +0.9 5,581,111 + AO353_25295 0.78 +0.2 5,581,112 - AO353_25295 0.78 -0.1 5,581,112 - AO353_25295 0.78 -1.1 5,581,249 + AO353_25295 0.88 +1.6 5,581,251 + AO353_25295 0.88 +0.3 5,581,251 + AO353_25295 0.88 -0.9 5,581,251 + AO353_25295 0.88 -0.5 5,581,251 + AO353_25295 0.88 +0.9 5,581,251 + AO353_25295 0.88 +0.1 5,581,358 - +0.6 5,581,387 + -0.9 5,581,416 - -0.5 5,581,484 - -1.1 5,581,550 + +0.6 5,581,641 + -0.4 5,581,642 - -0.9 5,581,741 + +0.6 5,581,769 + -1.2 5,581,830 - +0.9 5,581,839 - -0.5 5,581,947 + -1.7 5,581,948 - -1.1 5,581,995 + -0.7 5,582,017 + +0.3 5,582,057 + +0.5 5,582,057 + -0.4 5,582,175 + -0.7 5,582,176 - +0.3 5,582,176 - -0.1 5,582,406 + AO353_25300 0.22 -1.4 5,582,406 + AO353_25300 0.22 +0.7 5,582,407 - AO353_25300 0.22 +2.5 5,582,407 - AO353_25300 0.22 +0.2 5,582,407 - AO353_25300 0.22 -0.8 5,582,407 - AO353_25300 0.22 +1.9 5,582,410 + AO353_25300 0.22 -0.3 5,582,410 + AO353_25300 0.22 -1.1 5,582,411 - AO353_25300 0.23 -0.0 5,582,411 - AO353_25300 0.23 +0.2 5,582,411 - AO353_25300 0.23 +1.0
Or see this region's nucleotide sequence