Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21550 and AO353_21555 are separated by 28 nucleotides AO353_21555 and AO353_21560 are separated by 226 nucleotides AO353_21560 and AO353_21565 are separated by 62 nucleotides
AO353_21550: AO353_21550 - EvpB family type VI secretion protein, at 4,717,015 to 4,718,502
_21550
AO353_21555: AO353_21555 - type VI secretion protein, at 4,718,531 to 4,719,103
_21555
AO353_21560: AO353_21560 - type VI secretion protein, at 4,719,330 to 4,719,779
_21560
AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173
_21565
Position (kb)
4719
4720 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4718.344 kb on + strand, within AO353_21550 at 4718.344 kb on + strand, within AO353_21550 at 4718.345 kb on - strand, within AO353_21550 at 4718.385 kb on - strand at 4718.385 kb on - strand at 4718.760 kb on - strand, within AO353_21555 at 4719.026 kb on - strand, within AO353_21555 at 4719.026 kb on - strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.030 kb on - strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.092 kb on - strand at 4719.092 kb on - strand at 4719.177 kb on + strand at 4719.178 kb on - strand at 4719.178 kb on - strand at 4719.182 kb on + strand at 4719.251 kb on + strand at 4719.251 kb on + strand at 4719.251 kb on + strand at 4719.263 kb on + strand at 4719.274 kb on + strand at 4719.274 kb on + strand at 4719.275 kb on - strand at 4719.277 kb on - strand at 4719.277 kb on - strand at 4719.277 kb on - strand at 4719.348 kb on - strand at 4719.368 kb on - strand at 4719.368 kb on - strand at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.677 kb on + strand, within AO353_21560 at 4719.678 kb on - strand, within AO353_21560 at 4719.842 kb on - strand at 4719.853 kb on - strand at 4720.154 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.194 kb on + strand, within AO353_21565 at 4720.195 kb on - strand, within AO353_21565 at 4720.273 kb on + strand, within AO353_21565 at 4720.374 kb on + strand, within AO353_21565 at 4720.385 kb on + strand at 4720.385 kb on + strand, within AO353_21565 at 4720.386 kb on - strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.725 kb on - strand, within AO353_21565 at 4720.734 kb on + strand, within AO353_21565 at 4720.735 kb on - strand, within AO353_21565
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 4,718,344 + AO353_21550 0.89 -0.7 4,718,344 + AO353_21550 0.89 -2.9 4,718,345 - AO353_21550 0.89 -1.6 4,718,385 - -1.5 4,718,385 - +0.4 4,718,760 - AO353_21555 0.40 -1.8 4,719,026 - AO353_21555 0.86 +0.2 4,719,026 - AO353_21555 0.86 -0.2 4,719,029 + AO353_21555 0.87 -1.3 4,719,029 + AO353_21555 0.87 -0.1 4,719,029 + AO353_21555 0.87 -0.6 4,719,030 - AO353_21555 0.87 +0.2 4,719,042 + AO353_21555 0.89 -0.6 4,719,042 + AO353_21555 0.89 -1.4 4,719,042 + AO353_21555 0.89 +2.9 4,719,042 + AO353_21555 0.89 +0.9 4,719,042 + AO353_21555 0.89 +0.2 4,719,042 + AO353_21555 0.89 +0.7 4,719,042 + AO353_21555 0.89 +1.5 4,719,043 - AO353_21555 0.89 -0.8 4,719,043 - AO353_21555 0.89 -2.0 4,719,043 - AO353_21555 0.89 -0.6 4,719,043 - AO353_21555 0.89 -0.1 4,719,092 - +0.2 4,719,092 - -0.5 4,719,177 + -1.4 4,719,178 - -0.1 4,719,178 - -0.3 4,719,182 + -1.2 4,719,251 + +0.4 4,719,251 + +0.1 4,719,251 + +0.2 4,719,263 + +0.1 4,719,274 + +0.2 4,719,274 + -0.2 4,719,275 - -1.1 4,719,277 - -0.2 4,719,277 - -0.9 4,719,277 - -0.1 4,719,348 - -1.6 4,719,368 - +1.5 4,719,368 - +0.0 4,719,675 + AO353_21560 0.77 +0.3 4,719,675 + AO353_21560 0.77 -0.3 4,719,675 + AO353_21560 0.77 +1.5 4,719,675 + AO353_21560 0.77 -0.3 4,719,675 + AO353_21560 0.77 +3.3 4,719,676 - AO353_21560 0.77 +0.6 4,719,676 - AO353_21560 0.77 +1.9 4,719,676 - AO353_21560 0.77 +0.1 4,719,676 - AO353_21560 0.77 -1.8 4,719,676 - AO353_21560 0.77 +2.1 4,719,676 - AO353_21560 0.77 +0.3 4,719,676 - AO353_21560 0.77 +0.5 4,719,676 - AO353_21560 0.77 +0.3 4,719,677 + AO353_21560 0.77 -0.3 4,719,678 - AO353_21560 0.77 -1.7 4,719,842 - +1.0 4,719,853 - +1.3 4,720,154 + AO353_21565 0.23 -0.2 4,720,191 + AO353_21565 0.26 -0.2 4,720,191 + AO353_21565 0.26 +0.9 4,720,191 + AO353_21565 0.26 +1.1 4,720,192 - AO353_21565 0.26 +0.7 4,720,192 - AO353_21565 0.26 -0.7 4,720,192 - AO353_21565 0.26 -0.1 4,720,194 + AO353_21565 0.26 +0.7 4,720,195 - AO353_21565 0.27 +0.2 4,720,273 + AO353_21565 0.32 +0.3 4,720,374 + AO353_21565 0.40 +0.1 4,720,385 + +1.8 4,720,385 + AO353_21565 0.41 -0.7 4,720,386 - AO353_21565 0.41 +0.2 4,720,622 + AO353_21565 0.59 -0.1 4,720,622 + AO353_21565 0.59 -0.7 4,720,622 + AO353_21565 0.59 -1.7 4,720,622 + AO353_21565 0.59 -0.7 4,720,622 + AO353_21565 0.59 -1.3 4,720,622 + AO353_21565 0.59 -1.2 4,720,622 + AO353_21565 0.59 +0.5 4,720,622 + AO353_21565 0.59 -0.9 4,720,622 + AO353_21565 0.59 -0.4 4,720,622 + AO353_21565 0.59 +0.7 4,720,622 + AO353_21565 0.59 -0.5 4,720,623 - AO353_21565 0.59 -1.4 4,720,623 - AO353_21565 0.59 -0.4 4,720,623 - AO353_21565 0.59 +0.2 4,720,623 - AO353_21565 0.59 -0.3 4,720,623 - AO353_21565 0.59 +0.5 4,720,623 - AO353_21565 0.59 +1.8 4,720,623 - AO353_21565 0.59 +0.6 4,720,623 - AO353_21565 0.59 -2.3 4,720,623 - AO353_21565 0.59 -0.4 4,720,725 - AO353_21565 0.66 -0.7 4,720,734 + AO353_21565 0.67 -0.9 4,720,735 - AO353_21565 0.67 +0.5
Or see this region's nucleotide sequence