Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21080 and AO353_21085 are separated by 283 nucleotides AO353_21085 and AO353_21090 are separated by 86 nucleotides AO353_21090 and AO353_21095 are separated by 100 nucleotides AO353_21095 and AO353_21100 are separated by 35 nucleotides
AO353_21080: AO353_21080 - hypothetical protein, at 4,610,892 to 4,611,314
_21080
AO353_21085: AO353_21085 - lysine transporter LysE, at 4,611,598 to 4,612,218
_21085
AO353_21090: AO353_21090 - hypothetical protein, at 4,612,305 to 4,612,790
_21090
AO353_21095: AO353_21095 - glutamine cyclotransferase, at 4,612,891 to 4,613,520
_21095
AO353_21100: AO353_21100 - DNA-binding protein, at 4,613,556 to 4,614,776
_21100
Position (kb)
4612
4613 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4611.308 kb on + strand at 4611.309 kb on - strand at 4611.326 kb on + strand at 4611.326 kb on + strand at 4611.326 kb on + strand at 4611.327 kb on - strand at 4611.327 kb on - strand at 4611.327 kb on - strand at 4611.327 kb on - strand at 4611.331 kb on + strand at 4611.331 kb on + strand at 4611.369 kb on - strand at 4611.382 kb on - strand at 4611.407 kb on + strand at 4611.432 kb on - strand at 4611.432 kb on - strand at 4611.458 kb on + strand at 4611.499 kb on + strand at 4611.499 kb on + strand at 4611.500 kb on - strand at 4611.500 kb on - strand at 4611.504 kb on - strand at 4611.504 kb on - strand at 4611.504 kb on - strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.528 kb on + strand at 4611.529 kb on - strand at 4611.532 kb on + strand at 4611.532 kb on + strand at 4611.532 kb on + strand at 4611.533 kb on - strand at 4611.573 kb on + strand at 4611.573 kb on + strand at 4611.576 kb on + strand at 4611.576 kb on + strand at 4611.576 kb on + strand at 4611.576 kb on + strand at 4611.576 kb on + strand at 4611.576 kb on + strand at 4611.577 kb on - strand at 4611.577 kb on - strand at 4611.577 kb on - strand at 4611.577 kb on - strand at 4611.577 kb on - strand at 4611.577 kb on - strand at 4611.617 kb on + strand at 4611.617 kb on + strand at 4611.617 kb on + strand at 4611.618 kb on - strand at 4611.618 kb on - strand at 4611.618 kb on - strand at 4611.618 kb on - strand at 4611.618 kb on - strand at 4611.618 kb on - strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.621 kb on + strand at 4611.622 kb on - strand at 4611.622 kb on - strand at 4611.622 kb on - strand at 4611.625 kb on + strand at 4611.625 kb on + strand at 4611.626 kb on - strand at 4611.626 kb on - strand at 4611.757 kb on + strand, within AO353_21085 at 4611.757 kb on + strand, within AO353_21085 at 4611.757 kb on + strand, within AO353_21085 at 4611.757 kb on + strand, within AO353_21085 at 4611.757 kb on + strand, within AO353_21085 at 4611.758 kb on - strand, within AO353_21085 at 4611.758 kb on - strand, within AO353_21085 at 4611.824 kb on + strand, within AO353_21085 at 4611.844 kb on + strand, within AO353_21085 at 4611.844 kb on + strand, within AO353_21085 at 4611.844 kb on + strand, within AO353_21085 at 4611.845 kb on - strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.853 kb on + strand, within AO353_21085 at 4611.854 kb on - strand, within AO353_21085 at 4611.854 kb on - strand, within AO353_21085 at 4611.854 kb on - strand, within AO353_21085 at 4611.988 kb on + strand, within AO353_21085 at 4611.988 kb on + strand, within AO353_21085 at 4611.989 kb on - strand, within AO353_21085 at 4611.989 kb on - strand, within AO353_21085 at 4611.989 kb on - strand, within AO353_21085 at 4612.353 kb on - strand at 4612.353 kb on - strand at 4612.395 kb on + strand, within AO353_21090 at 4612.395 kb on + strand, within AO353_21090 at 4612.395 kb on + strand, within AO353_21090 at 4612.395 kb on + strand, within AO353_21090 at 4612.396 kb on - strand, within AO353_21090 at 4612.396 kb on - strand, within AO353_21090 at 4612.469 kb on + strand, within AO353_21090 at 4612.469 kb on + strand, within AO353_21090 at 4612.469 kb on + strand, within AO353_21090 at 4612.469 kb on + strand, within AO353_21090 at 4612.470 kb on - strand, within AO353_21090 at 4612.470 kb on - strand, within AO353_21090 at 4612.550 kb on + strand, within AO353_21090 at 4612.550 kb on + strand, within AO353_21090 at 4612.550 kb on + strand, within AO353_21090 at 4612.551 kb on - strand, within AO353_21090 at 4612.682 kb on + strand, within AO353_21090 at 4612.682 kb on + strand, within AO353_21090 at 4612.683 kb on - strand, within AO353_21090 at 4612.690 kb on - strand, within AO353_21090 at 4612.690 kb on - strand, within AO353_21090 at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.814 kb on + strand at 4612.815 kb on + strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.815 kb on - strand at 4612.817 kb on + strand at 4612.817 kb on + strand at 4612.817 kb on + strand at 4612.817 kb on + strand at 4612.818 kb on - strand at 4612.818 kb on - strand at 4612.818 kb on - strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.845 kb on + strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.846 kb on - strand at 4612.849 kb on + strand at 4612.849 kb on + strand at 4612.849 kb on + strand at 4612.850 kb on - strand at 4612.850 kb on - strand at 4612.850 kb on - strand at 4612.850 kb on - strand at 4612.915 kb on + strand at 4612.915 kb on + strand at 4612.915 kb on + strand at 4612.915 kb on + strand at 4612.915 kb on + strand at 4612.915 kb on + strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4612.916 kb on - strand at 4613.376 kb on + strand, within AO353_21095 at 4613.377 kb on - strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.444 kb on + strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.445 kb on - strand, within AO353_21095 at 4613.486 kb on + strand at 4613.487 kb on - strand at 4613.487 kb on - strand at 4613.487 kb on - strand at 4613.496 kb on + strand at 4613.497 kb on - strand at 4613.557 kb on + strand at 4613.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 4,611,308 + +1.2 4,611,309 - -0.3 4,611,326 + +1.3 4,611,326 + +0.1 4,611,326 + -0.2 4,611,327 - -0.9 4,611,327 - -0.5 4,611,327 - +0.5 4,611,327 - +0.0 4,611,331 + +1.0 4,611,331 + -0.1 4,611,369 - -0.6 4,611,382 - -1.3 4,611,407 + -0.4 4,611,432 - -0.6 4,611,432 - +2.0 4,611,458 + -1.4 4,611,499 + +1.0 4,611,499 + -0.2 4,611,500 - -1.0 4,611,500 - -0.3 4,611,504 - -0.5 4,611,504 - +1.0 4,611,504 - +0.9 4,611,528 + -0.4 4,611,528 + +0.3 4,611,528 + +1.0 4,611,528 + -0.4 4,611,528 + -0.4 4,611,528 + -1.0 4,611,528 + -0.5 4,611,529 - -0.5 4,611,532 + +0.5 4,611,532 + +0.4 4,611,532 + -0.0 4,611,533 - -1.2 4,611,573 + -0.0 4,611,573 + -1.5 4,611,576 + -0.6 4,611,576 + -0.1 4,611,576 + -0.6 4,611,576 + -1.6 4,611,576 + +0.1 4,611,576 + -0.2 4,611,577 - -1.8 4,611,577 - -0.2 4,611,577 - -0.5 4,611,577 - -0.5 4,611,577 - +1.7 4,611,577 - +0.2 4,611,617 + -0.8 4,611,617 + -0.0 4,611,617 + +0.7 4,611,618 - -2.2 4,611,618 - -0.6 4,611,618 - +1.5 4,611,618 - -0.2 4,611,618 - +0.2 4,611,618 - -1.5 4,611,621 + -0.2 4,611,621 + -2.0 4,611,621 + -1.0 4,611,621 + -1.8 4,611,621 + +0.1 4,611,621 + +0.5 4,611,621 + +0.2 4,611,622 - +0.4 4,611,622 - +0.2 4,611,622 - -1.3 4,611,625 + -0.4 4,611,625 + +0.9 4,611,626 - -0.8 4,611,626 - -0.3 4,611,757 + AO353_21085 0.26 +0.4 4,611,757 + AO353_21085 0.26 +0.7 4,611,757 + AO353_21085 0.26 -0.3 4,611,757 + AO353_21085 0.26 +0.5 4,611,757 + AO353_21085 0.26 +0.7 4,611,758 - AO353_21085 0.26 +0.8 4,611,758 - AO353_21085 0.26 -2.3 4,611,824 + AO353_21085 0.36 +1.1 4,611,844 + AO353_21085 0.40 -0.8 4,611,844 + AO353_21085 0.40 +1.1 4,611,844 + AO353_21085 0.40 -0.6 4,611,845 - AO353_21085 0.40 -0.5 4,611,853 + AO353_21085 0.41 +1.0 4,611,853 + AO353_21085 0.41 -0.5 4,611,853 + AO353_21085 0.41 +0.2 4,611,853 + AO353_21085 0.41 -1.2 4,611,853 + AO353_21085 0.41 +1.5 4,611,853 + AO353_21085 0.41 +0.5 4,611,853 + AO353_21085 0.41 +0.5 4,611,854 - AO353_21085 0.41 +0.4 4,611,854 - AO353_21085 0.41 -1.8 4,611,854 - AO353_21085 0.41 -1.5 4,611,988 + AO353_21085 0.63 +1.2 4,611,988 + AO353_21085 0.63 +1.3 4,611,989 - AO353_21085 0.63 -0.9 4,611,989 - AO353_21085 0.63 +0.9 4,611,989 - AO353_21085 0.63 +0.4 4,612,353 - +0.6 4,612,353 - -2.0 4,612,395 + AO353_21090 0.19 -0.9 4,612,395 + AO353_21090 0.19 +0.2 4,612,395 + AO353_21090 0.19 +0.0 4,612,395 + AO353_21090 0.19 -0.2 4,612,396 - AO353_21090 0.19 -0.8 4,612,396 - AO353_21090 0.19 -0.0 4,612,469 + AO353_21090 0.34 -0.2 4,612,469 + AO353_21090 0.34 -0.5 4,612,469 + AO353_21090 0.34 -1.3 4,612,469 + AO353_21090 0.34 +0.3 4,612,470 - AO353_21090 0.34 -1.0 4,612,470 - AO353_21090 0.34 +0.1 4,612,550 + AO353_21090 0.50 -0.8 4,612,550 + AO353_21090 0.50 -0.4 4,612,550 + AO353_21090 0.50 -0.5 4,612,551 - AO353_21090 0.51 -0.5 4,612,682 + AO353_21090 0.78 +0.2 4,612,682 + AO353_21090 0.78 -1.4 4,612,683 - AO353_21090 0.78 +0.6 4,612,690 - AO353_21090 0.79 +1.0 4,612,690 - AO353_21090 0.79 -0.5 4,612,814 + +1.9 4,612,814 + +0.1 4,612,814 + -1.6 4,612,814 + -0.0 4,612,814 + -0.9 4,612,814 + +1.2 4,612,814 + -1.4 4,612,814 + -0.3 4,612,814 + -0.5 4,612,814 + +0.2 4,612,814 + -0.5 4,612,814 + +0.5 4,612,814 + -0.5 4,612,815 + -1.5 4,612,815 - +0.5 4,612,815 - +0.2 4,612,815 - -0.9 4,612,815 - -0.5 4,612,815 - -0.4 4,612,815 - -0.3 4,612,815 - -0.0 4,612,815 - +0.2 4,612,815 - -1.7 4,612,815 - -0.8 4,612,815 - +0.1 4,612,815 - +0.0 4,612,817 + +0.6 4,612,817 + -0.0 4,612,817 + -1.3 4,612,817 + +0.7 4,612,818 - +0.2 4,612,818 - -0.5 4,612,818 - -0.8 4,612,845 + +0.2 4,612,845 + -1.0 4,612,845 + -1.2 4,612,845 + -0.0 4,612,845 + +0.2 4,612,845 + -0.6 4,612,845 + -0.9 4,612,845 + +0.7 4,612,845 + +0.4 4,612,845 + +0.6 4,612,846 - +1.2 4,612,846 - +0.5 4,612,846 - +1.8 4,612,846 - -0.4 4,612,846 - +1.0 4,612,846 - +0.2 4,612,846 - +1.5 4,612,846 - -0.9 4,612,846 - -0.4 4,612,846 - -1.0 4,612,846 - -1.3 4,612,846 - +0.1 4,612,846 - +0.2 4,612,846 - +0.3 4,612,846 - +0.3 4,612,846 - -0.0 4,612,846 - +0.5 4,612,846 - -0.0 4,612,846 - -0.5 4,612,846 - -1.3 4,612,846 - +0.4 4,612,846 - -2.0 4,612,846 - +0.2 4,612,849 + -0.6 4,612,849 + -1.4 4,612,849 + +0.1 4,612,850 - -0.5 4,612,850 - -0.6 4,612,850 - +1.3 4,612,850 - -2.1 4,612,915 + -0.9 4,612,915 + -1.1 4,612,915 + +1.1 4,612,915 + -0.6 4,612,915 + -1.0 4,612,915 + -1.8 4,612,916 - -1.0 4,612,916 - +1.4 4,612,916 - +0.5 4,612,916 - +1.3 4,612,916 - -1.3 4,612,916 - +0.0 4,612,916 - -1.1 4,612,916 - -1.5 4,612,916 - +0.3 4,612,916 - -1.2 4,612,916 - +0.2 4,612,916 - +0.9 4,613,376 + AO353_21095 0.77 -0.6 4,613,377 - AO353_21095 0.77 -0.1 4,613,444 + AO353_21095 0.88 -1.0 4,613,444 + AO353_21095 0.88 -0.6 4,613,444 + AO353_21095 0.88 -1.2 4,613,444 + AO353_21095 0.88 +0.2 4,613,444 + AO353_21095 0.88 +2.0 4,613,444 + AO353_21095 0.88 -0.0 4,613,444 + AO353_21095 0.88 -0.3 4,613,444 + AO353_21095 0.88 -0.1 4,613,444 + AO353_21095 0.88 -0.2 4,613,444 + AO353_21095 0.88 -1.9 4,613,444 + AO353_21095 0.88 -0.8 4,613,444 + AO353_21095 0.88 -0.3 4,613,444 + AO353_21095 0.88 -0.0 4,613,444 + AO353_21095 0.88 -0.3 4,613,444 + AO353_21095 0.88 +1.5 4,613,444 + AO353_21095 0.88 -0.8 4,613,445 - AO353_21095 0.88 +0.7 4,613,445 - AO353_21095 0.88 -0.5 4,613,445 - AO353_21095 0.88 -0.7 4,613,445 - AO353_21095 0.88 -0.2 4,613,445 - AO353_21095 0.88 +1.4 4,613,445 - AO353_21095 0.88 +2.2 4,613,486 + -0.4 4,613,487 - -0.3 4,613,487 - -0.0 4,613,487 - -0.2 4,613,496 + -0.0 4,613,497 - -1.5 4,613,557 + +1.1 4,613,558 - -0.9
Or see this region's nucleotide sequence