Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19500

Experiment: Paraquat dichloride 0.032 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19495 and AO353_19500 overlap by 11 nucleotidesAO353_19500 and AO353_19505 overlap by 4 nucleotides AO353_19495: AO353_19495 - ABC transporter ATP-binding protein, at 4,271,724 to 4,273,442 _19495 AO353_19500: AO353_19500 - peptidase S8 and S53 subtilisin kexin sedolisin, at 4,273,432 to 4,274,109 _19500 AO353_19505: AO353_19505 - FAD-dependent oxidoreductase, at 4,274,106 to 4,275,401 _19505 Position (kb) 4273 4274 4275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4272.456 kb on + strand, within AO353_19495at 4272.456 kb on + strand, within AO353_19495at 4272.457 kb on - strand, within AO353_19495at 4272.457 kb on - strand, within AO353_19495at 4272.469 kb on + strand, within AO353_19495at 4272.470 kb on - strand, within AO353_19495at 4272.470 kb on - strand, within AO353_19495at 4272.561 kb on + strand, within AO353_19495at 4272.615 kb on + strand, within AO353_19495at 4272.615 kb on + strand, within AO353_19495at 4272.615 kb on + strand, within AO353_19495at 4272.615 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.660 kb on + strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.661 kb on - strand, within AO353_19495at 4272.824 kb on - strand, within AO353_19495at 4273.063 kb on - strand, within AO353_19495at 4273.334 kb on + strandat 4273.334 kb on + strandat 4273.334 kb on + strandat 4273.334 kb on + strandat 4273.421 kb on + strandat 4273.421 kb on + strandat 4273.421 kb on + strandat 4273.421 kb on + strandat 4273.422 kb on - strandat 4273.422 kb on - strandat 4273.422 kb on - strandat 4273.422 kb on - strandat 4273.446 kb on - strandat 4273.517 kb on - strand, within AO353_19500at 4273.951 kb on + strand, within AO353_19500at 4273.951 kb on + strand, within AO353_19500at 4273.951 kb on + strand, within AO353_19500at 4273.952 kb on - strand, within AO353_19500at 4273.952 kb on - strand, within AO353_19500at 4273.952 kb on - strand, within AO353_19500at 4274.178 kb on + strandat 4274.680 kb on - strand, within AO353_19505at 4274.742 kb on + strand, within AO353_19505at 4274.743 kb on - strand, within AO353_19505at 4274.743 kb on - strand, within AO353_19505at 4274.984 kb on + strand, within AO353_19505at 4275.075 kb on + strand, within AO353_19505at 4275.076 kb on - strand, within AO353_19505at 4275.076 kb on - strand, within AO353_19505

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL
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4,272,456 + AO353_19495 0.43 -0.7
4,272,456 + AO353_19495 0.43 +0.4
4,272,457 - AO353_19495 0.43 +1.4
4,272,457 - AO353_19495 0.43 +0.1
4,272,469 + AO353_19495 0.43 -1.4
4,272,470 - AO353_19495 0.43 +0.3
4,272,470 - AO353_19495 0.43 -1.3
4,272,561 + AO353_19495 0.49 +3.0
4,272,615 + AO353_19495 0.52 -0.4
4,272,615 + AO353_19495 0.52 -1.8
4,272,615 + AO353_19495 0.52 -1.0
4,272,615 + AO353_19495 0.52 +0.6
4,272,660 + AO353_19495 0.54 +0.2
4,272,660 + AO353_19495 0.54 -1.4
4,272,660 + AO353_19495 0.54 -0.7
4,272,660 + AO353_19495 0.54 -1.7
4,272,660 + AO353_19495 0.54 -1.0
4,272,660 + AO353_19495 0.54 -1.5
4,272,661 - AO353_19495 0.55 -1.3
4,272,661 - AO353_19495 0.55 -2.1
4,272,661 - AO353_19495 0.55 -1.7
4,272,661 - AO353_19495 0.55 -0.1
4,272,661 - AO353_19495 0.55 -0.6
4,272,661 - AO353_19495 0.55 +0.9
4,272,824 - AO353_19495 0.64 +1.1
4,273,063 - AO353_19495 0.78 +1.7
4,273,334 + -0.7
4,273,334 + -1.1
4,273,334 + -1.0
4,273,334 + -2.0
4,273,421 + -2.3
4,273,421 + +0.4
4,273,421 + +1.3
4,273,421 + +0.8
4,273,422 - +0.7
4,273,422 - +2.2
4,273,422 - +0.0
4,273,422 - +0.7
4,273,446 - -0.2
4,273,517 - AO353_19500 0.13 +1.0
4,273,951 + AO353_19500 0.77 +0.2
4,273,951 + AO353_19500 0.77 +0.6
4,273,951 + AO353_19500 0.77 +0.7
4,273,952 - AO353_19500 0.77 +1.5
4,273,952 - AO353_19500 0.77 -1.4
4,273,952 - AO353_19500 0.77 +0.0
4,274,178 + +1.4
4,274,680 - AO353_19505 0.44 -2.2
4,274,742 + AO353_19505 0.49 -1.1
4,274,743 - AO353_19505 0.49 -0.7
4,274,743 - AO353_19505 0.49 +0.6
4,274,984 + AO353_19505 0.68 -0.2
4,275,075 + AO353_19505 0.75 -1.6
4,275,076 - AO353_19505 0.75 +0.6
4,275,076 - AO353_19505 0.75 +2.3

Or see this region's nucleotide sequence