Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18975 and AO353_18980 are separated by 101 nucleotides AO353_18980 and AO353_18985 are separated by 251 nucleotides AO353_18985 and AO353_18990 are separated by 14 nucleotides
AO353_18975: AO353_18975 - glycosylase, at 4,169,569 to 4,170,990
_18975
AO353_18980: AO353_18980 - DoxX family protein, at 4,171,092 to 4,171,526
_18980
AO353_18985: AO353_18985 - hypothetical protein, at 4,171,778 to 4,172,086
_18985
AO353_18990: AO353_18990 - transcription elongation factor GreB, at 4,172,101 to 4,172,598
_18990
Position (kb)
4171
4172 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4170.310 kb on + strand, within AO353_18975 at 4170.310 kb on + strand, within AO353_18975 at 4170.311 kb on - strand, within AO353_18975 at 4170.311 kb on - strand, within AO353_18975 at 4170.373 kb on + strand, within AO353_18975 at 4170.373 kb on + strand, within AO353_18975 at 4170.373 kb on + strand, within AO353_18975 at 4170.373 kb on + strand, within AO353_18975 at 4170.373 kb on + strand, within AO353_18975 at 4170.374 kb on - strand, within AO353_18975 at 4170.374 kb on - strand, within AO353_18975 at 4170.374 kb on - strand, within AO353_18975 at 4170.374 kb on - strand, within AO353_18975 at 4170.375 kb on + strand, within AO353_18975 at 4170.375 kb on + strand, within AO353_18975 at 4170.375 kb on + strand, within AO353_18975 at 4170.376 kb on - strand, within AO353_18975 at 4170.376 kb on - strand, within AO353_18975 at 4170.411 kb on + strand, within AO353_18975 at 4170.411 kb on + strand, within AO353_18975 at 4170.411 kb on + strand, within AO353_18975 at 4170.411 kb on + strand, within AO353_18975 at 4170.412 kb on - strand, within AO353_18975 at 4170.412 kb on - strand, within AO353_18975 at 4170.412 kb on - strand, within AO353_18975 at 4170.412 kb on - strand, within AO353_18975 at 4170.415 kb on + strand, within AO353_18975 at 4170.415 kb on + strand, within AO353_18975 at 4170.517 kb on - strand, within AO353_18975 at 4170.612 kb on + strand, within AO353_18975 at 4170.613 kb on - strand, within AO353_18975 at 4170.613 kb on - strand, within AO353_18975 at 4170.645 kb on + strand, within AO353_18975 at 4170.645 kb on + strand, within AO353_18975 at 4170.645 kb on + strand, within AO353_18975 at 4170.646 kb on - strand, within AO353_18975 at 4170.688 kb on + strand, within AO353_18975 at 4170.688 kb on + strand, within AO353_18975 at 4170.688 kb on + strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.689 kb on - strand, within AO353_18975 at 4170.769 kb on + strand, within AO353_18975 at 4170.769 kb on + strand, within AO353_18975 at 4170.769 kb on + strand, within AO353_18975 at 4170.769 kb on + strand, within AO353_18975 at 4170.769 kb on + strand, within AO353_18975 at 4170.770 kb on - strand, within AO353_18975 at 4170.770 kb on - strand, within AO353_18975 at 4170.867 kb on + strand at 4170.868 kb on - strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.898 kb on + strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.899 kb on - strand at 4170.903 kb on + strand at 4170.903 kb on + strand at 4170.903 kb on + strand at 4170.903 kb on + strand at 4170.903 kb on + strand at 4170.904 kb on - strand at 4170.904 kb on - strand at 4170.904 kb on - strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.906 kb on + strand at 4170.916 kb on - strand at 4170.916 kb on - strand at 4170.916 kb on - strand at 4170.919 kb on + strand at 4170.931 kb on + strand at 4170.931 kb on + strand at 4170.931 kb on + strand at 4170.931 kb on + strand at 4170.932 kb on - strand at 4170.985 kb on - strand at 4171.031 kb on - strand at 4171.037 kb on - strand at 4171.037 kb on - strand at 4171.050 kb on - strand at 4171.052 kb on + strand at 4171.053 kb on - strand at 4171.053 kb on - strand at 4171.055 kb on - strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.074 kb on + strand at 4171.075 kb on - strand at 4171.075 kb on - strand at 4171.075 kb on - strand at 4171.075 kb on - strand at 4171.075 kb on - strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.089 kb on - strand at 4171.109 kb on + strand at 4171.109 kb on + strand at 4171.110 kb on - strand at 4171.110 kb on - strand at 4171.110 kb on - strand at 4171.114 kb on + strand at 4171.114 kb on + strand at 4171.114 kb on + strand at 4171.114 kb on + strand at 4171.115 kb on - strand at 4171.115 kb on - strand at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.242 kb on + strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.243 kb on - strand, within AO353_18980 at 4171.463 kb on + strand, within AO353_18980 at 4171.613 kb on + strand at 4171.613 kb on + strand at 4171.613 kb on + strand at 4171.613 kb on + strand at 4171.613 kb on + strand at 4171.613 kb on + strand at 4171.614 kb on - strand at 4171.614 kb on - strand at 4171.614 kb on - strand at 4171.614 kb on - strand at 4171.637 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.645 kb on + strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.646 kb on - strand at 4171.663 kb on + strand at 4171.663 kb on + strand at 4171.663 kb on + strand at 4171.664 kb on - strand at 4171.683 kb on - strand at 4171.788 kb on + strand at 4171.788 kb on + strand at 4171.788 kb on + strand at 4171.789 kb on - strand at 4171.789 kb on - strand at 4171.800 kb on + strand at 4171.800 kb on + strand at 4171.801 kb on - strand at 4171.801 kb on - strand at 4171.801 kb on - strand at 4171.801 kb on - strand at 4171.801 kb on - strand at 4171.886 kb on + strand, within AO353_18985 at 4171.886 kb on + strand, within AO353_18985 at 4171.909 kb on + strand, within AO353_18985 at 4171.909 kb on + strand, within AO353_18985 at 4171.910 kb on - strand, within AO353_18985 at 4171.981 kb on + strand, within AO353_18985 at 4171.981 kb on + strand, within AO353_18985 at 4172.109 kb on - strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.126 kb on + strand at 4172.127 kb on - strand at 4172.127 kb on - strand at 4172.127 kb on - strand at 4172.127 kb on - strand at 4172.127 kb on - strand at 4172.127 kb on - strand at 4172.146 kb on - strand at 4172.146 kb on - strand at 4172.227 kb on + strand, within AO353_18990 at 4172.227 kb on + strand, within AO353_18990 at 4172.227 kb on + strand, within AO353_18990 at 4172.227 kb on + strand, within AO353_18990 at 4172.227 kb on + strand, within AO353_18990 at 4172.227 kb on + strand, within AO353_18990 at 4172.228 kb on - strand, within AO353_18990 at 4172.264 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.315 kb on + strand, within AO353_18990 at 4172.316 kb on - strand, within AO353_18990 at 4172.423 kb on + strand, within AO353_18990 at 4172.423 kb on + strand, within AO353_18990 at 4172.424 kb on - strand, within AO353_18990 at 4172.424 kb on - strand, within AO353_18990 at 4172.430 kb on - strand, within AO353_18990 at 4172.430 kb on - strand, within AO353_18990 at 4172.430 kb on - strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.500 kb on + strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990 at 4172.501 kb on - strand, within AO353_18990
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 4,170,310 + AO353_18975 0.52 +0.8 4,170,310 + AO353_18975 0.52 +0.6 4,170,311 - AO353_18975 0.52 -1.6 4,170,311 - AO353_18975 0.52 +1.1 4,170,373 + AO353_18975 0.57 -1.5 4,170,373 + AO353_18975 0.57 -1.3 4,170,373 + AO353_18975 0.57 -0.1 4,170,373 + AO353_18975 0.57 -0.5 4,170,373 + AO353_18975 0.57 -0.2 4,170,374 - AO353_18975 0.57 -1.8 4,170,374 - AO353_18975 0.57 -0.1 4,170,374 - AO353_18975 0.57 -1.1 4,170,374 - AO353_18975 0.57 -1.3 4,170,375 + AO353_18975 0.57 -1.8 4,170,375 + AO353_18975 0.57 -0.1 4,170,375 + AO353_18975 0.57 -0.5 4,170,376 - AO353_18975 0.57 -0.2 4,170,376 - AO353_18975 0.57 +0.6 4,170,411 + AO353_18975 0.59 -0.7 4,170,411 + AO353_18975 0.59 -0.1 4,170,411 + AO353_18975 0.59 -1.0 4,170,411 + AO353_18975 0.59 -0.5 4,170,412 - AO353_18975 0.59 -1.3 4,170,412 - AO353_18975 0.59 +0.2 4,170,412 - AO353_18975 0.59 -0.5 4,170,412 - AO353_18975 0.59 +1.6 4,170,415 + AO353_18975 0.59 +0.7 4,170,415 + AO353_18975 0.59 -0.2 4,170,517 - AO353_18975 0.67 -0.8 4,170,612 + AO353_18975 0.73 +0.4 4,170,613 - AO353_18975 0.73 +2.9 4,170,613 - AO353_18975 0.73 -0.5 4,170,645 + AO353_18975 0.76 +1.0 4,170,645 + AO353_18975 0.76 +3.4 4,170,645 + AO353_18975 0.76 -0.0 4,170,646 - AO353_18975 0.76 -0.1 4,170,688 + AO353_18975 0.79 -0.3 4,170,688 + AO353_18975 0.79 +0.6 4,170,688 + AO353_18975 0.79 +0.4 4,170,689 - AO353_18975 0.79 -0.4 4,170,689 - AO353_18975 0.79 +1.5 4,170,689 - AO353_18975 0.79 +0.7 4,170,689 - AO353_18975 0.79 +0.9 4,170,689 - AO353_18975 0.79 -1.1 4,170,689 - AO353_18975 0.79 -0.1 4,170,769 + AO353_18975 0.84 -1.7 4,170,769 + AO353_18975 0.84 -0.5 4,170,769 + AO353_18975 0.84 -0.7 4,170,769 + AO353_18975 0.84 +1.6 4,170,769 + AO353_18975 0.84 -0.4 4,170,770 - AO353_18975 0.84 +0.2 4,170,770 - AO353_18975 0.84 +0.5 4,170,867 + -0.1 4,170,868 - -1.3 4,170,898 + -0.2 4,170,898 + -1.5 4,170,898 + -0.9 4,170,898 + +0.6 4,170,898 + -0.5 4,170,898 + -0.9 4,170,898 + +1.3 4,170,899 - +0.4 4,170,899 - +0.5 4,170,899 - -1.0 4,170,899 - -0.3 4,170,899 - +1.5 4,170,899 - +0.0 4,170,899 - -1.7 4,170,903 + -0.4 4,170,903 + -0.2 4,170,903 + +0.2 4,170,903 + +1.6 4,170,903 + -1.2 4,170,904 - -0.3 4,170,904 - +0.6 4,170,904 - +0.3 4,170,906 + -0.4 4,170,906 + -2.3 4,170,906 + +0.5 4,170,906 + +0.2 4,170,906 + +1.2 4,170,906 + +1.1 4,170,906 + -1.0 4,170,916 - +2.3 4,170,916 - -0.8 4,170,916 - -0.8 4,170,919 + +1.0 4,170,931 + -0.5 4,170,931 + +0.4 4,170,931 + -1.5 4,170,931 + -0.5 4,170,932 - -0.2 4,170,985 - -0.8 4,171,031 - -1.0 4,171,037 - +0.5 4,171,037 - +1.1 4,171,050 - +0.6 4,171,052 + -0.3 4,171,053 - -0.1 4,171,053 - +1.1 4,171,055 - -1.3 4,171,074 + -0.4 4,171,074 + +0.0 4,171,074 + -0.1 4,171,074 + +0.0 4,171,074 + -0.8 4,171,074 + +1.4 4,171,074 + -2.8 4,171,074 + +0.2 4,171,074 + -1.1 4,171,074 + -2.2 4,171,074 + -1.7 4,171,074 + +0.1 4,171,074 + -0.8 4,171,074 + -1.0 4,171,074 + -0.4 4,171,075 - -0.4 4,171,075 - -0.2 4,171,075 - -0.4 4,171,075 - -0.6 4,171,075 - -0.1 4,171,088 + -0.4 4,171,088 + -3.1 4,171,088 + -1.2 4,171,088 + -0.5 4,171,088 + -0.4 4,171,088 + -0.3 4,171,088 + -0.5 4,171,088 + -1.1 4,171,088 + +0.4 4,171,089 - +1.0 4,171,089 - -2.4 4,171,089 - +0.0 4,171,089 - +0.4 4,171,089 - +1.8 4,171,089 - +0.4 4,171,089 - +1.9 4,171,089 - -0.1 4,171,089 - -0.8 4,171,109 + -0.2 4,171,109 + -0.4 4,171,110 - -0.2 4,171,110 - -1.2 4,171,110 - +1.0 4,171,114 + -1.8 4,171,114 + -1.1 4,171,114 + +0.3 4,171,114 + +0.3 4,171,115 - -0.4 4,171,115 - +0.3 4,171,242 + AO353_18980 0.34 -0.2 4,171,242 + AO353_18980 0.34 -0.7 4,171,242 + AO353_18980 0.34 +0.6 4,171,242 + AO353_18980 0.34 +0.2 4,171,242 + AO353_18980 0.34 -2.4 4,171,242 + AO353_18980 0.34 +1.2 4,171,242 + AO353_18980 0.34 -1.0 4,171,242 + AO353_18980 0.34 +0.2 4,171,243 - AO353_18980 0.35 +0.0 4,171,243 - AO353_18980 0.35 +0.0 4,171,243 - AO353_18980 0.35 -0.4 4,171,243 - AO353_18980 0.35 -0.4 4,171,243 - AO353_18980 0.35 -2.0 4,171,243 - AO353_18980 0.35 -0.5 4,171,243 - AO353_18980 0.35 -0.7 4,171,243 - AO353_18980 0.35 +0.2 4,171,463 + AO353_18980 0.85 +0.2 4,171,613 + +1.1 4,171,613 + -0.4 4,171,613 + -0.8 4,171,613 + +0.6 4,171,613 + -0.6 4,171,613 + -1.2 4,171,614 - +3.6 4,171,614 - -0.3 4,171,614 - -0.2 4,171,614 - +0.6 4,171,637 + -1.8 4,171,645 + +0.6 4,171,645 + +0.0 4,171,645 + +0.5 4,171,645 + -1.0 4,171,645 + -1.3 4,171,645 + -0.7 4,171,645 + -1.0 4,171,645 + -1.8 4,171,646 - +0.6 4,171,646 - -0.2 4,171,646 - +0.8 4,171,646 - +0.3 4,171,646 - +0.8 4,171,646 - +0.1 4,171,646 - +0.3 4,171,663 + -0.1 4,171,663 + -0.2 4,171,663 + -0.4 4,171,664 - +0.6 4,171,683 - -0.5 4,171,788 + +0.9 4,171,788 + +1.3 4,171,788 + -0.1 4,171,789 - -0.2 4,171,789 - +0.5 4,171,800 + +0.3 4,171,800 + -0.6 4,171,801 - +0.7 4,171,801 - -0.4 4,171,801 - -0.2 4,171,801 - +0.6 4,171,801 - -1.3 4,171,886 + AO353_18985 0.35 -0.4 4,171,886 + AO353_18985 0.35 -0.9 4,171,909 + AO353_18985 0.42 -0.5 4,171,909 + AO353_18985 0.42 -0.3 4,171,910 - AO353_18985 0.43 -0.1 4,171,981 + AO353_18985 0.66 -1.3 4,171,981 + AO353_18985 0.66 +0.0 4,172,109 - -0.7 4,172,126 + -0.5 4,172,126 + +0.1 4,172,126 + -0.3 4,172,126 + +1.4 4,172,126 + -2.1 4,172,126 + -1.9 4,172,126 + +0.0 4,172,126 + -0.5 4,172,127 - -0.7 4,172,127 - -0.5 4,172,127 - +1.4 4,172,127 - +0.0 4,172,127 - +0.2 4,172,127 - -0.5 4,172,146 - +0.0 4,172,146 - +0.7 4,172,227 + AO353_18990 0.25 +0.7 4,172,227 + AO353_18990 0.25 +0.9 4,172,227 + AO353_18990 0.25 +0.7 4,172,227 + AO353_18990 0.25 -0.7 4,172,227 + AO353_18990 0.25 -1.0 4,172,227 + AO353_18990 0.25 -1.2 4,172,228 - AO353_18990 0.26 -0.8 4,172,264 + AO353_18990 0.33 -1.5 4,172,315 + AO353_18990 0.43 +2.9 4,172,315 + AO353_18990 0.43 -0.7 4,172,315 + AO353_18990 0.43 +0.0 4,172,315 + AO353_18990 0.43 -1.0 4,172,315 + AO353_18990 0.43 -0.2 4,172,315 + AO353_18990 0.43 -0.2 4,172,316 - AO353_18990 0.43 +0.4 4,172,423 + AO353_18990 0.65 -0.7 4,172,423 + AO353_18990 0.65 +0.8 4,172,424 - AO353_18990 0.65 -0.5 4,172,424 - AO353_18990 0.65 +0.5 4,172,430 - AO353_18990 0.66 -1.4 4,172,430 - AO353_18990 0.66 -1.0 4,172,430 - AO353_18990 0.66 -0.2 4,172,500 + AO353_18990 0.80 -0.1 4,172,500 + AO353_18990 0.80 -0.7 4,172,500 + AO353_18990 0.80 -0.5 4,172,500 + AO353_18990 0.80 +0.1 4,172,500 + AO353_18990 0.80 -1.1 4,172,500 + AO353_18990 0.80 +0.0 4,172,500 + AO353_18990 0.80 +0.6 4,172,500 + AO353_18990 0.80 -0.4 4,172,500 + AO353_18990 0.80 -0.2 4,172,500 + AO353_18990 0.80 +0.5 4,172,500 + AO353_18990 0.80 -0.6 4,172,501 - AO353_18990 0.80 -1.5 4,172,501 - AO353_18990 0.80 +1.9 4,172,501 - AO353_18990 0.80 -0.5 4,172,501 - AO353_18990 0.80 +0.3 4,172,501 - AO353_18990 0.80 -2.8 4,172,501 - AO353_18990 0.80 +1.3 4,172,501 - AO353_18990 0.80 -1.1 4,172,501 - AO353_18990 0.80 -0.3
Or see this region's nucleotide sequence